Clone Sequence Records
BS15782.3prime Sequence
897 bp (715 high quality bases) assembled on 2006-12-21
> BS15782.3prime
ATGGTCTAGAAAGCTTTCAGTTGATGCGACACACGCTGCTCTCGCTCTTC
GCTCTTGTCCAATTGCCATGGAACTCCTCATGACGCAAACCCATGGCCTG
AGCCTCCGACGTCGTGGAATCCGTAGTGCTGGCCAGATGGAGACGCTCCG
AAGCGAAGCTATCCAAGCTGGTGGAGTGCTTACAAGGATGGATTTTGGTC
ATGAACTCCCTTTGGCTGCAGCCTGCATTCTCCTGATTGTTCCGGATGAT
CTCACGGGCAAAACGGGCCAATAACTTCTGTTTGTGGTGACGCTTGCTGA
GTGGTCCATGGGCACAGTTCTCTCGGATCCAGCGACGAGCCTCCCGACAT
CCTAGATATATACTCTGGTTGCTAAACGTCTTTGTATCCAACATGAAGCC
ACGATTGCCCAGCAGTCCGAAGCCCAGATCGAAAATATTGCGACCCAGGT
TGAGCGGATTTGGTCCGTCCTTGGACTGGAACTTATTCGGACCGACGGCA
TCCATAGGCTCCTTGGTTTCCTGGTAGAATCGGCGATCCTCCGGCGTGCA
ATACGTCCAGGGTTTGAAACTCATCGTGTAATGATCCTTCATCTCAAAGT
CGACGGGCAGACTATCATTGAAGTTAACCTGATCGATCGAGACCAGTCTG
CCATTGTGATGGGTTACTTGATAGGTAACGCCCAAGGAATCAGGAATTTG
TATGGTGCCTTTTCCGTGGAAACGATTGTTGAGAAACTCTCCCGTGTAGC
ATGTCCCATCCGGATAAATGTAGACACCCATCTCCTGCATGCCCAACTCA
TCACTGGGACAAACGTATCTGGATCCAGTCAACAGAATATCAACCTGGGT
AATGCTTGAAGATTTTGTTGTCTTCTGCTCCATGTCGACTGATAACT
BS15782.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-PA | 867 | CG3306-RA | 1..867 | 883..17 | 4310 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 1026 | CG3306-RA | 73..940 | 884..17 | 4325 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9601595..9602462 | 884..17 | 4325 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:41:47 has no hits.
BS15782.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:24 Download gff for
BS15782.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..867 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:16 Download gff for
BS15782.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..867 | 17..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:36:46 Download gff for
BS15782.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..940 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:32 Download gff for
BS15782.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..940 | 17..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:32 Download gff for
BS15782.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9601595..9602462 | 17..884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:36:46 Download gff for
BS15782.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9594695..9595562 | 17..884 | 99 | | Minus |
BS15782.5prime Sequence
791 bp (732 high quality bases) assembled on 2006-12-21
> BS15782.5prime
GAAGTTATCAGTCGACATGGAGCAGAAGACAACAAAATCTTCAAGCATTA
CCCAGGTTGATATTCTGTTGACTGGATCCAGATACGTTGGTCCCAGTGAT
GAGTTGGGCATGCAGGAGATGGGTGTCTACATTTATCCGGATGGGACATG
CTACACGGGAGAGTTTCTCAACAATCGTTTCCACGGAAAAGGCACCATAC
AAATTCCTGATTCCTTGGGCGTTACCTATCAAGTAACCCATCACAATGGC
AGACTGGTCTCGATCGATCAGGTTAACTTCAATGATAGTCTGCCCGTCGA
CTTTGAGATGAAGGATCATTACACGATGAGTTTCAAACCCTGGACGTATT
GCACGCCGGAGGATCGCCGATTCTACCAGGAAACCAAGGAGCCTATGGAT
GCCGTCGGTCCGAATAAGTTCCAGTCCAAGGACGGACCAAATCCGCTCAA
CCTGGGTCGCAATATTTTCGATCTGGGCTTCGGACTGCTGGGCAATCGTG
GCTTCATGTTGGATACAAAGACGTTTAGCAACCAGAGTATATATCTAGGA
TGTCGGGAGGCTCGTCGCTGGATCCGAGAGAACTGTGCCCATGGACCACT
CAGCAAGCGTCACCACAAACAGAAGTTATTGGCCCGTTTTGCCCGTGAGA
TCATCCGGAACAATCAGGAGAATGCAGGCTGCAGCCAAAGGGAGTTCATG
ACCAAAATCCATCCTTGTAAGCACTCCACCAGCTTGGATAGCTTCGCTTC
GGAGCGTCTCCATCTGGCCAGCACTACGGATTCCACGACGT
BS15782.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-PA | 867 | CG3306-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 1026 | CG3306-RA | 73..848 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9601595..9602370 | 16..791 | 3880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:13:54 has no hits.
BS15782.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:25 Download gff for
BS15782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:18 Download gff for
BS15782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:26:08 Download gff for
BS15782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..848 | 16..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:50:44 Download gff for
BS15782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..848 | 16..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:50:44 Download gff for
BS15782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9601595..9602370 | 16..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:26:08 Download gff for
BS15782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9594695..9595470 | 16..791 | 100 | | Plus |
BS15782.complete Sequence
899 bp assembled on 2006-11-29
GenBank Submission: FJ637965
> BS15782.complete
GAAGTTATCAGTCGACATGGAGCAGAAGACAACAAAATCTTCAAGCATTA
CCCAGGTTGATATTCTGTTGACTGGATCCAGATACGTTGGTCCCAGTGAT
GAGTTGGGCATGCAGGAGATGGGTGTCTACATTTATCCGGATGGGACATG
CTACACGGGAGAGTTTCTCAACAATCGTTTCCACGGAAAAGGCACCATAC
AAATTCCTGATTCCTTGGGCGTTACCTATCAAGTAACCCATCACAATGGC
AGACTGGTCTCGATCGATCAGGTTAACTTCAATGATAGTCTGCCCGTCGA
CTTTGAGATGAAGGATCATTACACGATGAGTTTCAAACCCTGGACGTATT
GCACGCCGGAGGATCGCCGATTCTACCAGGAAACCAAGGAGCCTATGGAT
GCCGTCGGTCCGAATAAGTTCCAGTCCAAGGACGGACCAAATCCGCTCAA
CCTGGGTCGCAATATTTTCGATCTGGGCTTCGGACTGCTGGGCAATCGTG
GCTTCATGTTGGATACAAAGACGTTTAGCAACCAGAGTATATATCTAGGA
TGTCGGGAGGCTCGTCGCTGGATCCGAGAGAACTGTGCCCATGGACCACT
CAGCAAGCGTCACCACAAACAGAAGTTATTGGCCCGTTTTGCCCGTGAGA
TCATCCGGAACAATCAGGAGAATGCAGGCTGCAGCCAAAGGGAGTTCATG
ACCAAAATCCATCCTTGTAAGCACTCCACCAGCTTGGATAGCTTCGCTTC
GGAGCGTCTCCATCTGGCCAGCACTACGGATTCCACGACGTCGGAGGCTC
AGGCCATGGGTTTGCGTCATGAGGAGTTCCATGGCAATTGGACAAGAGCG
AAGAGCGAGAGCAGCGTGTGTCGCATCAACTGAAAGCTTTCTAGACCAT
BS15782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 867 | CG3306-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-RA | 1026 | CG3306-RA | 73..940 | 16..883 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9601595..9602462 | 16..883 | 4340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:45 has no hits.
BS15782.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:02 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:28 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..940 | 16..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:50 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 74..939 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:02 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 73..940 | 16..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:26 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3306-RA | 74..939 | 17..882 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:26 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9601596..9602461 | 17..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:50 Download gff for
BS15782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9594696..9595561 | 17..882 | 100 | | Plus |
BS15782.pep Sequence
Translation from 16 to 882
> BS15782.pep
MEQKTTKSSSITQVDILLTGSRYVGPSDELGMQEMGVYIYPDGTCYTGEF
LNNRFHGKGTIQIPDSLGVTYQVTHHNGRLVSIDQVNFNDSLPVDFEMKD
HYTMSFKPWTYCTPEDRRFYQETKEPMDAVGPNKFQSKDGPNPLNLGRNI
FDLGFGLLGNRGFMLDTKTFSNQSIYLGCREARRWIRENCAHGPLSKRHH
KQKLLARFAREIIRNNQENAGCSQREFMTKIHPCKHSTSLDSFASERLHL
ASTTDSTTSEAQAMGLRHEEFHGNWTRAKSESSVCRIN*
BS15782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3306-PA | 288 | CG3306-PA | 1..288 | 1..288 | 1554 | 100 | Plus |
| CG3222-PA | 379 | CG3222-PA | 8..210 | 12..216 | 245 | 30.8 | Plus |
