Clone Sequence Records
BS15784.3prime Sequence
285 bp (285 high quality bases) assembled on 2006-12-21
> BS15784.3prime
ATGGTCTAGAAAGCTTTTACTTTAGAAGCGGTGCAGATGGAACGGCGTAG
CTCAGTGGTGCGGAGTAGGCCAAAGGCGAGGGGTAGGCCATTAGTACAGC
CAGAGGAGAGTAAGCCACGTAAGCAGTGTAGGCCAAAGGCGCACCAATCA
GTCCAGGCTTGGCAGCAGAGCAGGAGACGATGGCCAAGACAAGGACGTCG
GATTTAAACATTTGGATTATGGATCTGGTGCTTTCGGTTCGAAAACTTGA
ACCTGATGTCGCCCAACACATGTCGACTGATAACT
BS15784.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32207-PA | 255 | CG32207-RA | 1..248 | 271..24 | 1240 | 100 | Minus |
CG12519-PA | 396 | CG12519-RA | 323..386 | 90..27 | 270 | 96.8 | Minus |
CG32213-PA | 465 | CG32213-RA | 374..437 | 108..45 | 195 | 92.1 | Minus |
CG32208-PA | 465 | 825-Oak-RA | 374..437 | 108..45 | 195 | 92.1 | Minus |
CG32214-PA | 426 | CG32214-RA | 335..400 | 108..43 | 180 | 90.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18294-RA | 507 | CG18294-RA | 14..163 | 252..103 | 345 | 82 | Minus |
CG12519-RB | 600 | CG12519-RB | 12..161 | 252..103 | 345 | 82 | Minus |
CG12519-RA | 507 | CG12519-RA | 12..161 | 252..103 | 345 | 82 | Minus |
CG12519-RB | 600 | CG12519-RB | 357..438 | 108..27 | 320 | 92.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19477676..19477851 | 24..199 | 880 | 100 | Plus |
3L | 28110227 | 3L | 19423378..19423450 | 199..271 | 365 | 100 | Plus |
3L | 28110227 | 3L | 19477906..19477978 | 199..271 | 365 | 100 | Plus |
3L | 28110227 | 3L | 19487161..19487225 | 199..263 | 325 | 100 | Plus |
3L | 28110227 | 3L | 19472902..19472983 | 108..27 | 320 | 92.7 | Minus |
3L | 28110227 | 3L | 19486809..19486873 | 27..91 | 280 | 95.4 | Plus |
3L | 28110227 | 3L | 19423273..19423323 | 149..199 | 255 | 100 | Plus |
3L | 28110227 | 3L | 19467718..19467799 | 108..27 | 245 | 86.6 | Minus |
3L | 28110227 | 3L | 19471757..19471820 | 45..108 | 245 | 92.2 | Plus |
3L | 28110227 | 3L | 19476247..19476310 | 108..45 | 245 | 92.2 | Minus |
3L | 28110227 | 3L | 19422986..19423050 | 27..91 | 235 | 90.8 | Plus |
3L | 28110227 | 3L | 19467017..19467093 | 199..271 | 215 | 88.3 | Plus |
3L | 28110227 | 3L | 19472479..19472555 | 271..199 | 215 | 88.3 | Minus |
3L | 28110227 | 3L | 19475512..19475588 | 199..271 | 215 | 88.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 04:24:06 has no hits.
BS15784.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:28 Download gff for
BS15784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-PA | 1..255 | 17..271 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:22 Download gff for
BS15784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-PA | 1..255 | 17..271 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 05:31:32 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-01-30 06:45:44 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:45:44 Download gff for
BS15784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19477668..19477851 | 16..199 | 98 | <- | Plus |
3L | 19477907..19477980 | 200..274 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:31:32 Download gff for
BS15784.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19470768..19470951 | 16..199 | 98 | <- | Plus |
arm_3L | 19471007..19471080 | 200..274 | 98 | | Plus |
BS15784.5prime Sequence
285 bp (285 high quality bases) assembled on 2006-12-21
> BS15784.5prime
GAAGTTATCAGTCGACATGTGTTGGGCGACATCAGGTTCAAGTTTTCGAA
CCGAAAGCACCAGATCCATAATCCAAATGTTTAAATCCGACGTCCTTGTC
TTGGCCATCGTCTCCTGCTCTGCTGCCAAGCCTGGACTGATTGGTGCGCC
TTTGGCCTACACTGCTTACGTGGCTTACTCTCCTCTGGCTGTACTAATGG
CCTACCCCTCGCCTTTGGCCTACTCCGCACCACTGAGCTACGCCGTTCCA
TCTGCACCGCTTCTTATCTAAAAGCTTTCTAGACC
BS15784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32207-PA | 255 | CG32207-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
CG12519-PA | 396 | CG12519-RA | 323..396 | 198..271 | 295 | 95.9 | Plus |
CG32213-PA | 465 | CG32213-RA | 374..437 | 180..243 | 195 | 92.1 | Plus |
CG32208-PA | 465 | 825-Oak-RA | 374..437 | 180..243 | 195 | 92.1 | Plus |
CG32214-PA | 426 | CG32214-RA | 335..400 | 180..245 | 180 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 357..449 | 180..272 | 360 | 92.5 | Plus |
CG12519-RA | 507 | CG12519-RA | 357..449 | 180..272 | 360 | 92.5 | Plus |
CG12519-RB | 600 | CG12519-RB | 12..161 | 36..185 | 345 | 82 | Plus |
CG12519-RA | 507 | CG12519-RA | 12..161 | 36..185 | 345 | 82 | Plus |
CG18294-RA | 507 | CG18294-RA | 14..163 | 36..185 | 345 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19477668..19477851 | 272..89 | 920 | 100 | Minus |
3L | 28110227 | 3L | 19423378..19423450 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19477906..19477978 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19472902..19472994 | 180..272 | 360 | 92.5 | Plus |
3L | 28110227 | 3L | 19487161..19487225 | 89..25 | 325 | 100 | Minus |
3L | 28110227 | 3L | 19486798..19486873 | 272..197 | 305 | 93.4 | Minus |
3L | 28110227 | 3L | 19467718..19467810 | 180..272 | 285 | 87.1 | Plus |
3L | 28110227 | 3L | 19471728..19471820 | 272..180 | 270 | 86 | Minus |
3L | 28110227 | 3L | 19476247..19476339 | 180..272 | 270 | 86 | Plus |
3L | 28110227 | 3L | 19422975..19423050 | 272..197 | 260 | 89.5 | Minus |
3L | 28110227 | 3L | 19423273..19423323 | 139..89 | 255 | 100 | Minus |
3L | 28110227 | 3L | 19467017..19467093 | 89..17 | 215 | 88.3 | Minus |
3L | 28110227 | 3L | 19472479..19472555 | 17..89 | 215 | 88.3 | Plus |
3L | 28110227 | 3L | 19475512..19475588 | 89..17 | 215 | 88.3 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:03:47 has no hits.
BS15784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:29 Download gff for
BS15784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-PA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:24 Download gff for
BS15784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-PA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-08 14:13:55 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-02 14:51:05 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:05 Download gff for
BS15784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19477662..19477851 | 89..281 | 97 | <- | Minus |
3L | 19477907..19477980 | 14..88 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:13:55 Download gff for
BS15784.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19470762..19470951 | 89..281 | 97 | <- | Minus |
arm_3L | 19471007..19471080 | 14..88 | 98 | | Minus |
BS15784.complete Sequence
287 bp assembled on 2006-11-29
GenBank Submission: FJ637966
> BS15784.complete
GAAGTTATCAGTCGACATGTGTTGGGCGACATCAGGTTCAAGTTTTCGAA
CCGAAAGCACCAGATCCATAATCCAAATGTTTAAATCCGACGTCCTTGTC
TTGGCCATCGTCTCCTGCTCTGCTGCCAAGCCTGGACTGATTGGTGCGCC
TTTGGCCTACACTGCTTACGTGGCTTACTCTCCTCTGGCTGTACTAATGG
CCTACCCCTCGCCTTTGGCCTACTCCGCACCACTGAGCTACGCCGTTCCA
TCTGCACCGCTTCTTATCTAAAAGCTTTCTAGACCAT
BS15784.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 396 | CG12519-PB | 305..396 | 180..271 | 355 | 92.4 | Plus |
CG12519-RA | 396 | CG12519-PA | 305..396 | 180..271 | 355 | 92.4 | Plus |
CG32214-RC | 351 | CG32214-PC | 260..351 | 180..271 | 280 | 87 | Plus |
CG12519-RB | 396 | CG12519-PB | 1..109 | 77..185 | 185 | 78 | Plus |
CG12519-RA | 396 | CG12519-PA | 1..109 | 77..185 | 185 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12519-RB | 600 | CG12519-RB | 357..449 | 180..272 | 360 | 92.5 | Plus |
CG12519-RA | 507 | CG12519-RA | 357..449 | 180..272 | 360 | 92.5 | Plus |
CG12519-RB | 600 | CG12519-RB | 12..161 | 36..185 | 345 | 82 | Plus |
CG12519-RA | 507 | CG12519-RA | 12..161 | 36..185 | 345 | 82 | Plus |
CG18294-RA | 507 | CG18294-RA | 14..163 | 36..185 | 345 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19477668..19477851 | 272..89 | 920 | 100 | Minus |
3L | 28110227 | 3L | 19423378..19423450 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19477906..19477978 | 89..17 | 365 | 100 | Minus |
3L | 28110227 | 3L | 19472902..19472994 | 180..272 | 360 | 92.5 | Plus |
3L | 28110227 | 3L | 19487161..19487225 | 89..25 | 325 | 100 | Minus |
3L | 28110227 | 3L | 19486798..19486873 | 272..197 | 305 | 93.4 | Minus |
3L | 28110227 | 3L | 19467718..19467810 | 180..272 | 285 | 87.1 | Plus |
3L | 28110227 | 3L | 19471728..19471820 | 272..180 | 270 | 86 | Minus |
3L | 28110227 | 3L | 19476247..19476339 | 180..272 | 270 | 86 | Plus |
3L | 28110227 | 3L | 19422975..19423050 | 272..197 | 260 | 89.5 | Minus |
3L | 28110227 | 3L | 19423273..19423323 | 139..89 | 255 | 100 | Minus |
3L | 28110227 | 3L | 19467017..19467093 | 89..17 | 215 | 88.3 | Minus |
3L | 28110227 | 3L | 19472479..19472555 | 17..89 | 215 | 88.3 | Plus |
3L | 28110227 | 3L | 19475512..19475588 | 89..17 | 215 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:33:37 has no hits.
BS15784.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:57:57 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:50 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 486..749 | 14..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:03 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 375..446 | 198..269 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:57:58 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32207-RA | 486..749 | 14..281 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:23 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12519-RA | 375..446 | 198..269 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:23 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19477671..19477851 | 89..269 | 100 | <- | Minus |
3L | 19477907..19477978 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:03 Download gff for
BS15784.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19470771..19470951 | 89..269 | 100 | <- | Minus |
arm_3L | 19471007..19471078 | 17..88 | 100 | | Minus |
BS15784.pep Sequence
Translation from 16 to 270
> BS15784.pep
MCWATSGSSFRTESTRSIIQMFKSDVLVLAIVSCSAAKPGLIGAPLAYTA
YVAYSPLAVLMAYPSPLAYSAPLSYAVPSAPLLI*
BS15784.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32214-PC | 116 | CG32214-PC | 1..116 | 21..84 | 175 | 41.4 | Plus |
CG32214-PB | 116 | CG32214-PB | 1..116 | 21..84 | 175 | 41.4 | Plus |
CG14096-PA | 122 | CG14096-PA | 1..54 | 21..83 | 167 | 57.1 | Plus |
CG12519-PB | 131 | CG12519-PB | 1..54 | 21..83 | 167 | 57.1 | Plus |
CG12519-PA | 131 | CG12519-PA | 1..54 | 21..83 | 167 | 57.1 | Plus |