Clone BS15785 Report

Search the DGRC for BS15785

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:85
Vector:pDNR-Dual
Associated Gene/Transcriptpinta-RA
Protein status:BS15785.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15785.3prime Sequence

814 bp (727 high quality bases) assembled on 2006-12-21

> BS15785.3prime
ATGGTCTAGAAAGCTTTCACTTTAGCTTGCTTTTGTATTTGTCTTGTTCC
ACATAGAAATCGGCGTTCTCCTCGACCAACTGCTTCCACTTCACAGACAG
CTCCATATAGCTTAATCCCTGACCACCGAGTTCCTTTGGCAACTGATCGC
AGCTCACGGATGTTCCTTCACGACGCACGAAAAGTCGCGATCTTATCTTG
GGCGTCATGAATATTCTAAAGGTGTTCAAAAAGAAGTTCACATGGCGCGG
GGCGTTGGTGAATTCCAATAGCTTGGGCTGACATGGATATGCGGTCCAGC
TTTCCACGGATCTCTTGATGAGCTTCGGATTCATTTGAAGAGCGTGCCCC
AGTTGAACGCCCTGCATATCCAGAATAGCCACCATTCCGCGGGCACAGGT
CTCCGGATCGAGCTTTAGCAGCAGGTCCAATATCATTTTGCTGGTTTTAA
AAACATTGTTCTGGCTGTGGAGCTTGGGATCGTGTGCTGCTGTGCGTATG
ACCACCACCATCCTTTGTTCGGCATCCGGACCGATGGGTAGGAAGACGCC
CAGCTTGAGTAGGTCCTGGATCTCGGGCAATTGGGGATCGCGATTATCGA
ACCATTCGGTGCGCTCCGCCCGCATTTGGTAGAACGTTTTCAGTTTCTTT
TTGGCCCGTTCCACATCGAACTTGGAGGTGCGGAGGAAGAAGTGCAGGTT
CTCGAAGGTGTTGCATCCGTTGATCTGCGGATTGGCGACGAGCCAGTCGC
TGAGATCCTGGACCTGCGCCAAAACCCTTTCGGGGTCACATCGGTGGTGG
CCACTTGTCTTTTG

BS15785.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13848-PA 822 CG13848-RA 50..822 789..17 3840 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-RB 1341 CG13848-RB 263..1061 814..17 3955 99.7 Minus
pinta-RA 1137 CG13848-RA 59..857 814..17 3955 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22424298..22424667 446..814 1800 99.7 Plus
3R 32079331 3R 22423852..22424081 216..445 1150 100 Plus
3R 32079331 3R 22423596..22423799 17..220 1005 99.5 Plus
Blast to na_te.dros performed on 2015-01-31 03:20:43 has no hits.

BS15785.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:30 Download gff for BS15785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13848-PA 24..822 17..814 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:25 Download gff for BS15785.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13848-PA 24..822 17..814 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:46:52 Download gff for BS15785.3prime
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 59..857 17..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:00 Download gff for BS15785.3prime
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 59..857 17..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:00 Download gff for BS15785.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22423596..22423794 17..215 99 <- Plus
3R 22423852..22424081 216..445 100 <- Plus
3R 22424298..22424667 446..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:46:52 Download gff for BS15785.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18249318..18249516 17..215 99 <- Plus
arm_3R 18249574..18249803 216..445 100 <- Plus
arm_3R 18250020..18250389 446..814 99   Plus

BS15785.5prime Sequence

786 bp (761 high quality bases) assembled on 2006-12-21

> BS15785.5prime
GAAGTTATCAGTCGACATGTGGTCGCGCAGCAGCAGTTCCAAAAGACAAG
TGGCCACCACCGATGGTGACCCCGAAAGGGTTTTGGCGCAGGTCCAGGAT
CTCAGCGACTGGCTCGTCGCCAATCCGCAGATCAACGGATGCAACACCTT
CGAGAACCTGCACTTCTTCCTCCGCACCTCCAAGTTCGATGTGGAACGGG
CCAAAAAGAAACTGAAAACGTTCTACCAAATGCGGGCGGAGCGCACCGAA
TGGTTCGATAATCGCGATCCCCAATTGCCCGAGATCCAGGACCTACTCAA
GCTGGGCGTCTTCCTACCCATCGGTCCGGATGCCGAACAAAGGATGGTGG
TGGTCATACGCACAGCAGCACACGATCCCAAGCTCCACAGCCAGAACAAT
GTTTTTAAAACCAGCAAAATGATATTGGACCTGCTGCTAAAGCTCGATCC
GGAGACCTGTGCCCGCGGAATGGTGGCTATTCTGGATATGCAGGGCGTTC
AACTGGGGCACGCTCTTCAAATGAATCCGAAGCTCATCAAGAGATCCGTG
GAAAGCTGGACCGCATATCCATGTCAGCCCAAGCTATTGGAATTCACCAA
CGCCCCGCGCCATGTGAACTTCTTTTTGAACACCTTTAGAATATTCATGA
CGCCCAAGATAAGATCGCGACTTTTCGTGCGTCGTGAAGGAACATCCGTG
AGCTGCGATCAGTTGCCAAAGGAACTCGGTGGTCAGGGATTAAGCTATAT
GGAGCTGTCTGTGAAGTGGAAGCAGTTGGTCGAGGA

BS15785.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13848-PA 822 CG13848-RA 1..770 17..786 3850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-RB 1341 CG13848-RB 239..1009 16..786 3855 100 Plus
pinta-RA 1137 CG13848-RA 35..805 16..786 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22424298..22424691 409..16 1970 100 Minus
3R 32079331 3R 22423852..22424081 639..410 1150 100 Minus
3R 32079331 3R 22423648..22423799 786..635 760 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:59:18 has no hits.

BS15785.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:32 Download gff for BS15785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13848-PA 1..769 17..785 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:26 Download gff for BS15785.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13848-PA 1..769 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:58 Download gff for BS15785.5prime
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 30..804 10..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:22 Download gff for BS15785.5prime
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 30..804 10..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:22 Download gff for BS15785.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22424298..22424696 10..409 99   Minus
3R 22423649..22423794 640..785 100 <- Minus
3R 22423852..22424081 410..639 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:58 Download gff for BS15785.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18249371..18249516 640..785 100 <- Minus
arm_3R 18249574..18249803 410..639 100 <- Minus
arm_3R 18250020..18250418 10..409 99   Minus

BS15785.complete Sequence

854 bp assembled on 2006-11-29

> BS15785.complete
GAAGTTATCAGTCGACATGTGGTCGCGCAGCAGCAGTTCCAAAAGACAAG
TGGCCACCACCGATGGTGACCCCGAAAGGGTTTTGGCGCAGGTCCAGGAT
CTCAGCGACTGGCTCGTCGCCAATCCGCAGATCAACGGATGCAACACCTT
CGAGAACCTGCACTTCTTCCTCCGCACCTCCAAGTTCGATGTGGAACGGG
CCAAAAAGAAACTGAAAACGTTCTACCAAATGCGGGCGGAGCGCACCGAA
TGGTTCGATAATCGCGATCCCCAATTGCCCGAGATCCAGGACCTACTCAA
GCTGGGCGTCTTCCTACCCATCGGTCCGGATGCCGAACAAAGGATGGTGG
TGGTCATACGCACAGCAGCACACGATCCCAAGCTCCACAGCCAGAACAAT
GTTTTTAAAACCAGCAAAATGATATTGGACCTGCTGCTAAAGCTCGATCC
GGAGACCTGTGCCCGCGGAATGGTGGCTATTCTGGATATGCAGGGCGTTC
AACTGGGGCACGCTCTTCAAATGAATCCGAAGCTCATCAAGAGATCCGTG
GAAAGCTGGACCGCATATCCATGTCAGCCCAAGCTATTGGAATTCACCAA
CGCCCCGCGCCATGTGAACTTCTTTTTGAACACCTTTAGAATATTCATGA
CGCCCAAGATAAGATCGCGACTTTTCGTGCGTCGTGAAGGAACATCCGTG
AGCTGCGATCAGTTGCCAAAGGAACTCGGTGGTCAGGGATTAAGCTATAT
GGAGCTGTCTGTGAAGTGGAAGCAGTTGGTCGAGGAGAACGCCGATTTCT
ATGTGGAACAAGACAAATACAAAAGCAAGCTCAAGTGAAAGCTTTCTAGA
CCAT

BS15785.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-RB 822 CG13848-PB 1..822 17..838 4110 100 Plus
pinta-RA 822 CG13848-PA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-RB 1341 CG13848-RB 239..1061 16..838 4115 100 Plus
pinta-RA 1137 CG13848-RA 35..857 16..838 4115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22424298..22424691 409..16 1970 100 Minus
3R 32079331 3R 22423852..22424081 639..410 1150 100 Minus
3R 32079331 3R 22423596..22423799 838..635 1020 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:15 has no hits.

BS15785.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:19 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:16 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 30..857 10..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:02 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 36..856 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:19 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 30..857 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:07 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
pinta-RA 36..856 17..837 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:07 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22423597..22423794 640..837 100 <- Minus
3R 22423852..22424081 410..639 100 <- Minus
3R 22424298..22424690 17..409 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:02 Download gff for BS15785.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18249319..18249516 640..837 100 <- Minus
arm_3R 18249574..18249803 410..639 100 <- Minus
arm_3R 18250020..18250412 17..409 100   Minus

BS15785.pep Sequence

Translation from 16 to 837

> BS15785.pep
MWSRSSSSKRQVATTDGDPERVLAQVQDLSDWLVANPQINGCNTFENLHF
FLRTSKFDVERAKKKLKTFYQMRAERTEWFDNRDPQLPEIQDLLKLGVFL
PIGPDAEQRMVVVIRTAAHDPKLHSQNNVFKTSKMILDLLLKLDPETCAR
GMVAILDMQGVQLGHALQMNPKLIKRSVESWTAYPCQPKLLEFTNAPRHV
NFFLNTFRIFMTPKIRSRLFVRREGTSVSCDQLPKELGGQGLSYMELSVK
WKQLVEENADFYVEQDKYKSKLK*

BS15785.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
pinta-PB 273 CG13848-PB 1..273 1..273 1428 100 Plus
pinta-PA 273 CG13848-PA 1..273 1..273 1428 100 Plus
CG31636-PB 313 CG31636-PB 23..280 19..268 290 28.3 Plus
CG31636-PA 313 CG31636-PA 23..280 19..268 290 28.3 Plus
CG33966-PA 310 CG33966-PA 23..280 19..268 281 26.7 Plus