Clone Sequence Records
BS15785.3prime Sequence
814 bp (727 high quality bases) assembled on 2006-12-21
> BS15785.3prime
ATGGTCTAGAAAGCTTTCACTTTAGCTTGCTTTTGTATTTGTCTTGTTCC
ACATAGAAATCGGCGTTCTCCTCGACCAACTGCTTCCACTTCACAGACAG
CTCCATATAGCTTAATCCCTGACCACCGAGTTCCTTTGGCAACTGATCGC
AGCTCACGGATGTTCCTTCACGACGCACGAAAAGTCGCGATCTTATCTTG
GGCGTCATGAATATTCTAAAGGTGTTCAAAAAGAAGTTCACATGGCGCGG
GGCGTTGGTGAATTCCAATAGCTTGGGCTGACATGGATATGCGGTCCAGC
TTTCCACGGATCTCTTGATGAGCTTCGGATTCATTTGAAGAGCGTGCCCC
AGTTGAACGCCCTGCATATCCAGAATAGCCACCATTCCGCGGGCACAGGT
CTCCGGATCGAGCTTTAGCAGCAGGTCCAATATCATTTTGCTGGTTTTAA
AAACATTGTTCTGGCTGTGGAGCTTGGGATCGTGTGCTGCTGTGCGTATG
ACCACCACCATCCTTTGTTCGGCATCCGGACCGATGGGTAGGAAGACGCC
CAGCTTGAGTAGGTCCTGGATCTCGGGCAATTGGGGATCGCGATTATCGA
ACCATTCGGTGCGCTCCGCCCGCATTTGGTAGAACGTTTTCAGTTTCTTT
TTGGCCCGTTCCACATCGAACTTGGAGGTGCGGAGGAAGAAGTGCAGGTT
CTCGAAGGTGTTGCATCCGTTGATCTGCGGATTGGCGACGAGCCAGTCGC
TGAGATCCTGGACCTGCGCCAAAACCCTTTCGGGGTCACATCGGTGGTGG
CCACTTGTCTTTTG
BS15785.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13848-PA | 822 | CG13848-RA | 50..822 | 789..17 | 3840 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 03:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pinta-RB | 1341 | CG13848-RB | 263..1061 | 814..17 | 3955 | 99.7 | Minus |
pinta-RA | 1137 | CG13848-RA | 59..857 | 814..17 | 3955 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 03:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22424298..22424667 | 446..814 | 1800 | 99.7 | Plus |
3R | 32079331 | 3R | 22423852..22424081 | 216..445 | 1150 | 100 | Plus |
3R | 32079331 | 3R | 22423596..22423799 | 17..220 | 1005 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-01-31 03:20:43 has no hits.
BS15785.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:30 Download gff for
BS15785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13848-PA | 24..822 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:25 Download gff for
BS15785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13848-PA | 24..822 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 20:46:52 Download gff for
BS15785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 59..857 | 17..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 05:20:00 Download gff for
BS15785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 59..857 | 17..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 05:20:00 Download gff for
BS15785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22423596..22423794 | 17..215 | 99 | <- | Plus |
3R | 22423852..22424081 | 216..445 | 100 | <- | Plus |
3R | 22424298..22424667 | 446..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 20:46:52 Download gff for
BS15785.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18249318..18249516 | 17..215 | 99 | <- | Plus |
arm_3R | 18249574..18249803 | 216..445 | 100 | <- | Plus |
arm_3R | 18250020..18250389 | 446..814 | 99 | | Plus |
BS15785.5prime Sequence
786 bp (761 high quality bases) assembled on 2006-12-21
> BS15785.5prime
GAAGTTATCAGTCGACATGTGGTCGCGCAGCAGCAGTTCCAAAAGACAAG
TGGCCACCACCGATGGTGACCCCGAAAGGGTTTTGGCGCAGGTCCAGGAT
CTCAGCGACTGGCTCGTCGCCAATCCGCAGATCAACGGATGCAACACCTT
CGAGAACCTGCACTTCTTCCTCCGCACCTCCAAGTTCGATGTGGAACGGG
CCAAAAAGAAACTGAAAACGTTCTACCAAATGCGGGCGGAGCGCACCGAA
TGGTTCGATAATCGCGATCCCCAATTGCCCGAGATCCAGGACCTACTCAA
GCTGGGCGTCTTCCTACCCATCGGTCCGGATGCCGAACAAAGGATGGTGG
TGGTCATACGCACAGCAGCACACGATCCCAAGCTCCACAGCCAGAACAAT
GTTTTTAAAACCAGCAAAATGATATTGGACCTGCTGCTAAAGCTCGATCC
GGAGACCTGTGCCCGCGGAATGGTGGCTATTCTGGATATGCAGGGCGTTC
AACTGGGGCACGCTCTTCAAATGAATCCGAAGCTCATCAAGAGATCCGTG
GAAAGCTGGACCGCATATCCATGTCAGCCCAAGCTATTGGAATTCACCAA
CGCCCCGCGCCATGTGAACTTCTTTTTGAACACCTTTAGAATATTCATGA
CGCCCAAGATAAGATCGCGACTTTTCGTGCGTCGTGAAGGAACATCCGTG
AGCTGCGATCAGTTGCCAAAGGAACTCGGTGGTCAGGGATTAAGCTATAT
GGAGCTGTCTGTGAAGTGGAAGCAGTTGGTCGAGGA
BS15785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13848-PA | 822 | CG13848-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pinta-RB | 1341 | CG13848-RB | 239..1009 | 16..786 | 3855 | 100 | Plus |
pinta-RA | 1137 | CG13848-RA | 35..805 | 16..786 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22424298..22424691 | 409..16 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 22423852..22424081 | 639..410 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 22423648..22423799 | 786..635 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:59:18 has no hits.
BS15785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:32 Download gff for
BS15785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13848-PA | 1..769 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:26 Download gff for
BS15785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13848-PA | 1..769 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:38:58 Download gff for
BS15785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 30..804 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:22 Download gff for
BS15785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 30..804 | 10..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:22 Download gff for
BS15785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22424298..22424696 | 10..409 | 99 | | Minus |
3R | 22423649..22423794 | 640..785 | 100 | <- | Minus |
3R | 22423852..22424081 | 410..639 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:38:58 Download gff for
BS15785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18249371..18249516 | 640..785 | 100 | <- | Minus |
arm_3R | 18249574..18249803 | 410..639 | 100 | <- | Minus |
arm_3R | 18250020..18250418 | 10..409 | 99 | | Minus |
BS15785.complete Sequence
854 bp assembled on 2006-11-29
> BS15785.complete
GAAGTTATCAGTCGACATGTGGTCGCGCAGCAGCAGTTCCAAAAGACAAG
TGGCCACCACCGATGGTGACCCCGAAAGGGTTTTGGCGCAGGTCCAGGAT
CTCAGCGACTGGCTCGTCGCCAATCCGCAGATCAACGGATGCAACACCTT
CGAGAACCTGCACTTCTTCCTCCGCACCTCCAAGTTCGATGTGGAACGGG
CCAAAAAGAAACTGAAAACGTTCTACCAAATGCGGGCGGAGCGCACCGAA
TGGTTCGATAATCGCGATCCCCAATTGCCCGAGATCCAGGACCTACTCAA
GCTGGGCGTCTTCCTACCCATCGGTCCGGATGCCGAACAAAGGATGGTGG
TGGTCATACGCACAGCAGCACACGATCCCAAGCTCCACAGCCAGAACAAT
GTTTTTAAAACCAGCAAAATGATATTGGACCTGCTGCTAAAGCTCGATCC
GGAGACCTGTGCCCGCGGAATGGTGGCTATTCTGGATATGCAGGGCGTTC
AACTGGGGCACGCTCTTCAAATGAATCCGAAGCTCATCAAGAGATCCGTG
GAAAGCTGGACCGCATATCCATGTCAGCCCAAGCTATTGGAATTCACCAA
CGCCCCGCGCCATGTGAACTTCTTTTTGAACACCTTTAGAATATTCATGA
CGCCCAAGATAAGATCGCGACTTTTCGTGCGTCGTGAAGGAACATCCGTG
AGCTGCGATCAGTTGCCAAAGGAACTCGGTGGTCAGGGATTAAGCTATAT
GGAGCTGTCTGTGAAGTGGAAGCAGTTGGTCGAGGAGAACGCCGATTTCT
ATGTGGAACAAGACAAATACAAAAGCAAGCTCAAGTGAAAGCTTTCTAGA
CCAT
BS15785.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pinta-RB | 822 | CG13848-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
pinta-RA | 822 | CG13848-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pinta-RB | 1341 | CG13848-RB | 239..1061 | 16..838 | 4115 | 100 | Plus |
pinta-RA | 1137 | CG13848-RA | 35..857 | 16..838 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22424298..22424691 | 409..16 | 1970 | 100 | Minus |
3R | 32079331 | 3R | 22423852..22424081 | 639..410 | 1150 | 100 | Minus |
3R | 32079331 | 3R | 22423596..22423799 | 838..635 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:57:15 has no hits.
BS15785.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:19 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:16 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 30..857 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:35:02 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 36..856 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:19 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 30..857 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:07 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pinta-RA | 36..856 | 17..837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:07 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22423597..22423794 | 640..837 | 100 | <- | Minus |
3R | 22423852..22424081 | 410..639 | 100 | <- | Minus |
3R | 22424298..22424690 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:35:02 Download gff for
BS15785.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18249319..18249516 | 640..837 | 100 | <- | Minus |
arm_3R | 18249574..18249803 | 410..639 | 100 | <- | Minus |
arm_3R | 18250020..18250412 | 17..409 | 100 | | Minus |
BS15785.pep Sequence
Translation from 16 to 837
> BS15785.pep
MWSRSSSSKRQVATTDGDPERVLAQVQDLSDWLVANPQINGCNTFENLHF
FLRTSKFDVERAKKKLKTFYQMRAERTEWFDNRDPQLPEIQDLLKLGVFL
PIGPDAEQRMVVVIRTAAHDPKLHSQNNVFKTSKMILDLLLKLDPETCAR
GMVAILDMQGVQLGHALQMNPKLIKRSVESWTAYPCQPKLLEFTNAPRHV
NFFLNTFRIFMTPKIRSRLFVRREGTSVSCDQLPKELGGQGLSYMELSVK
WKQLVEENADFYVEQDKYKSKLK*
BS15785.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pinta-PB | 273 | CG13848-PB | 1..273 | 1..273 | 1428 | 100 | Plus |
pinta-PA | 273 | CG13848-PA | 1..273 | 1..273 | 1428 | 100 | Plus |
CG31636-PB | 313 | CG31636-PB | 23..280 | 19..268 | 290 | 28.3 | Plus |
CG31636-PA | 313 | CG31636-PA | 23..280 | 19..268 | 290 | 28.3 | Plus |
CG33966-PA | 310 | CG33966-PA | 23..280 | 19..268 | 281 | 26.7 | Plus |