Clone Sequence Records
BS15787.3prime Sequence
837 bp (695 high quality bases) assembled on 2006-12-21
> BS15787.3prime
ATGGTCTAGAAAGCTTTCACTTCTCCATTGAAACCATATCTCGGCAAATA
AAGAAGGCGGCTACCAGAGCTGCAGTTTGAGCCACTTCTGTACATCCTTT
GGCCAATCTCTCCTCGATCTGAGCTAGCTTTACAATAAGCTTGTTCATGA
CCGACATAGGCAGCTCAAGTCTCATAACGAACAAATGCAATTCTGTAATG
ATGTCTTCCAGAGCGAGACCTCTTGCGTACTTGGCACTTTCGACAGTTTT
GAAGGAGTCCTCCAAGCTACTGCCAGATAGCAAGGCCTTCAATATCTGTT
CAATATCCTGCCTCAACGGATAGCCCACGCACATGTAGACGTTATCCTCG
TTGACCGTATCAAATGCCATCACGGTACTCTGCAGGACGTTCAAGACCTT
TCTCATATCACCTTTGGCCAGGGTCAGCAGTGCCCGCTTGCCGTCCTCAG
TTATCTGAACAGCTTCGGCTTCGATGATTTTTTCTAGTCGCGGCATCATC
TGATCCTGGGATAATGGAGCGAACCGAAAACGGGTGCAACGCGACTGCAG
GGCCGGAATGATTTTGCTCAAATAATTGCAAATCACACAGAAGCGCACGT
TGTCCGTATATTTCTCAATTATGCGGCGCAGGGCATTCTGGGCATCGTTG
GTCATGGCATCGGCCTCGTCCAAAATGATCAGCTTAAAGGTGTCGCAGAA
AATGGTGCGTGTGGACGCGAAGTTAAGGATTTGACCGCGCACAATCCCAA
TGCCTCGGTCATCTGAGGCATTCAGCTCCAGGACCATGGACTTGAACTGC
TGAAGGGAATACAATTGGCGAGCGCAGGCCAGGATTG
BS15787.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5313-PA | 999 | RfC3-RA | 179..999 | 837..17 | 3855 | 98.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC3-RA | 1134 | CG5313-RA | 254..1076 | 837..15 | 3965 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10419555..10419930 | 837..462 | 1805 | 98.7 | Minus |
2L | 23513712 | 2L | 10419992..10420205 | 460..247 | 1040 | 99.1 | Minus |
2L | 23513712 | 2L | 10420401..10420554 | 168..15 | 770 | 100 | Minus |
2L | 23513712 | 2L | 10420268..10420345 | 246..169 | 360 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-02 14:08:29 has no hits.
BS15787.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:35 Download gff for
BS15787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-PA | 179..999 | 17..837 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:31 Download gff for
BS15787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5313-PA | 179..999 | 17..837 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:47 Download gff for
BS15787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 254..1076 | 15..837 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:42 Download gff for
BS15787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 254..1076 | 15..837 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:42 Download gff for
BS15787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10419555..10419930 | 462..837 | 98 | -> | Minus |
2L | 10419991..10420205 | 247..461 | 98 | -> | Minus |
2L | 10420268..10420345 | 169..246 | 97 | -> | Minus |
2L | 10420401..10420554 | 15..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:47 Download gff for
BS15787.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10419555..10419930 | 462..837 | 98 | -> | Minus |
arm_2L | 10419991..10420205 | 247..461 | 98 | -> | Minus |
arm_2L | 10420268..10420345 | 169..246 | 97 | -> | Minus |
arm_2L | 10420401..10420554 | 15..168 | 100 | | Minus |
BS15787.5prime Sequence
886 bp (789 high quality bases) assembled on 2006-12-21
> BS15787.5prime
GAAGTTATCAGTCGACATGTCGGAAACCAGTGGACCCGCAGTGCGCATGC
CTTGGGTGGAAAAGTACAGACCAAGCGGTCTCGATGATTTGATATCTCAC
GAGGAAATAATATCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCC
CCATTTGCTGTTCTACGGACCACCTGGCACGGGAAAAACGAGTACAATCC
TGGCCTGCGCTCGCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTC
CTGGAGCTGAATGCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCA
AATCCTTAACTTCGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGC
TGATCATTTTGGACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCC
CTGCGCCGCATAATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGAT
TTGCAATTATTTGAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCC
GTTTTCGGTTCGCTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAA
AAAATCATCGAAGCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGC
ACTGCTGACCCTGGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGC
AGAGTACCGTGATGGCATTTGATACGGTCAACGAGGATAACGTCTACATG
TGCGTGGGCTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTT
GCTATCTGGCAGTAGCTTGGAGGACTCCTTCAAACTGTCGAAAGTGCCAA
GTACGCAAGAGGTCTCGCTCTGGAAGACATCATTACAGATTTGCATTTGT
TCGTTATGAGACTTGAGCTGCCTATGTCGGTCATGA
BS15787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5313-PA | 999 | RfC3-RA | 1..768 | 17..784 | 3665 | 99 | Plus |
CG5313-PA | 999 | RfC3-RA | 767..871 | 782..886 | 450 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC3-RA | 1134 | CG5313-RA | 76..946 | 17..886 | 4180 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10419480..10419930 | 120..570 | 2195 | 99.1 | Plus |
2L | 23513712 | 2L | 10419992..10420204 | 572..784 | 1035 | 99.1 | Plus |
2L | 23513712 | 2L | 10420268..10420345 | 785..862 | 345 | 96.2 | Plus |
2L | 23513712 | 2L | 10419358..10419423 | 54..119 | 330 | 100 | Plus |
2L | 23513712 | 2L | 10419265..10419303 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 16:46:55 has no hits.
BS15787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:36 Download gff for
BS15787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-PA | 1..870 | 17..885 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:32 Download gff for
BS15787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5313-PA | 1..870 | 17..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:53:19 Download gff for
BS15787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 76..945 | 17..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:16 Download gff for
BS15787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 76..945 | 17..885 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:16 Download gff for
BS15787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10419265..10419302 | 17..54 | 100 | -> | Plus |
2L | 10419359..10419423 | 55..119 | 100 | -> | Plus |
2L | 10419480..10419930 | 120..570 | 99 | -> | Plus |
2L | 10419991..10420205 | 571..784 | 98 | -> | Plus |
2L | 10420268..10420345 | 785..862 | 96 | -> | Plus |
2L | 10420401..10420423 | 863..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:53:19 Download gff for
BS15787.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10419265..10419302 | 17..54 | 100 | -> | Plus |
arm_2L | 10419359..10419423 | 55..119 | 100 | -> | Plus |
arm_2L | 10419480..10419930 | 120..570 | 99 | -> | Plus |
arm_2L | 10419991..10420205 | 571..784 | 98 | -> | Plus |
arm_2L | 10420268..10420345 | 785..862 | 96 | -> | Plus |
arm_2L | 10420401..10420423 | 863..885 | 100 | | Plus |
BS15787.complete Sequence
1031 bp assembled on 2006-11-29
GenBank Submission: FJ637968
> BS15787.complete
GAAGTTATCAGTCGACATGTCGGAAACCAGTGGACCCGCAGTGCGCATGC
CTTGGGTGGAAAAGTACAGACCAAGCGGTCTCGATGATTTGATATCTCAC
GAGGAAATAATATCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCC
CCATTTGCTGTTCTACGGACCACCTGGCACGGGAAAAACGAGTACAATCC
TGGCCTGCGCTCGCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTC
CTGGAGCTGAATGCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCA
AATCCTTAACTTCGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGC
TGATCATTTTGGACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCC
CTGCGCCGCATAATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGAT
TTGCAATTATTTGAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCC
GTTTTCGGTTCGCTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAA
AAAATCATCGAAGCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGC
ACTGCTGACCCTGGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGC
AGAGTACCGTGATGGCATTTGATACGGTCAACGAGGATAACGTCTACATG
TGCGTGGGCTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTT
GCTATCTGGCAGTAGCTTGGAGGACTCCTTCAAAACTGTCGAAAGTGCCA
AGTACGCAAGAGGTCTCGCTCTGGAAGACATCATTACAGAATTGCATTTG
TTCGTTATGAGACTTGAGCTGCCTATGTCGGTCATGAACAAGCTTATTGT
AAAGCTAGCTCAGATCGAGGAGAGATTGGCCAAAGGATGTACAGAAGTGG
CTCAAACTGCAGCTCTGGTAGCCGCCTTCTTTATTTGCCGAGATATGGTT
TCAATGGAGAAGTGAAAGCTTTCTAGACCAT
BS15787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC3-RA | 999 | CG5313-PA | 1..999 | 17..1015 | 4860 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC3-RA | 1134 | CG5313-RA | 76..1076 | 17..1017 | 4870 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10419480..10419930 | 120..570 | 2195 | 99.1 | Plus |
2L | 23513712 | 2L | 10419992..10420205 | 572..785 | 1040 | 99.1 | Plus |
2L | 23513712 | 2L | 10420401..10420554 | 864..1017 | 770 | 100 | Plus |
2L | 23513712 | 2L | 10420268..10420345 | 786..863 | 360 | 97.4 | Plus |
2L | 23513712 | 2L | 10419358..10419423 | 54..119 | 330 | 100 | Plus |
2L | 23513712 | 2L | 10419265..10419303 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:01:32 has no hits.
BS15787.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:03 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 1..999 | 17..1015 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:30 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 55..1055 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:48 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 76..1073 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:03 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 55..1055 | 17..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:02 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RfC3-RA | 76..1073 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:02 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10419265..10419302 | 17..54 | 100 | -> | Plus |
2L | 10419359..10419423 | 55..119 | 100 | -> | Plus |
2L | 10419480..10419930 | 120..570 | 99 | -> | Plus |
2L | 10419991..10420205 | 571..785 | 98 | -> | Plus |
2L | 10420268..10420345 | 786..863 | 97 | -> | Plus |
2L | 10420401..10420551 | 864..1014 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:48 Download gff for
BS15787.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10419265..10419302 | 17..54 | 100 | -> | Plus |
arm_2L | 10419359..10419423 | 55..119 | 100 | -> | Plus |
arm_2L | 10419480..10419930 | 120..570 | 99 | -> | Plus |
arm_2L | 10419991..10420205 | 571..785 | 98 | -> | Plus |
arm_2L | 10420268..10420345 | 786..863 | 97 | -> | Plus |
arm_2L | 10420401..10420551 | 864..1014 | 100 | | Plus |
BS15787.pep Sequence
Translation from 16 to 1014
> BS15787.pep
MSETSGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFY
GPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFA
STRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS
KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLA
KGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSS
LEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI
EERLAKGCTEVAQTAALVAAFFICRDMVSMEK*
BS15787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RfC3-PA | 332 | CG5313-PA | 1..332 | 1..332 | 1670 | 100 | Plus |
CG8142-PA | 353 | CG8142-PA | 31..303 | 12..273 | 533 | 40.1 | Plus |
RfC4-PA | 331 | CG14999-PA | 16..329 | 11..326 | 486 | 34.4 | Plus |
RfC38-PB | 356 | CG6258-PB | 4..339 | 13..321 | 267 | 25.9 | Plus |
RfC38-PA | 356 | CG6258-PA | 4..339 | 13..321 | 267 | 25.9 | Plus |