Clone BS15787 Report

Search the DGRC for BS15787

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptRfC3-RA
Protein status:BS15787.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15787.3prime Sequence

837 bp (695 high quality bases) assembled on 2006-12-21

> BS15787.3prime
ATGGTCTAGAAAGCTTTCACTTCTCCATTGAAACCATATCTCGGCAAATA
AAGAAGGCGGCTACCAGAGCTGCAGTTTGAGCCACTTCTGTACATCCTTT
GGCCAATCTCTCCTCGATCTGAGCTAGCTTTACAATAAGCTTGTTCATGA
CCGACATAGGCAGCTCAAGTCTCATAACGAACAAATGCAATTCTGTAATG
ATGTCTTCCAGAGCGAGACCTCTTGCGTACTTGGCACTTTCGACAGTTTT
GAAGGAGTCCTCCAAGCTACTGCCAGATAGCAAGGCCTTCAATATCTGTT
CAATATCCTGCCTCAACGGATAGCCCACGCACATGTAGACGTTATCCTCG
TTGACCGTATCAAATGCCATCACGGTACTCTGCAGGACGTTCAAGACCTT
TCTCATATCACCTTTGGCCAGGGTCAGCAGTGCCCGCTTGCCGTCCTCAG
TTATCTGAACAGCTTCGGCTTCGATGATTTTTTCTAGTCGCGGCATCATC
TGATCCTGGGATAATGGAGCGAACCGAAAACGGGTGCAACGCGACTGCAG
GGCCGGAATGATTTTGCTCAAATAATTGCAAATCACACAGAAGCGCACGT
TGTCCGTATATTTCTCAATTATGCGGCGCAGGGCATTCTGGGCATCGTTG
GTCATGGCATCGGCCTCGTCCAAAATGATCAGCTTAAAGGTGTCGCAGAA
AATGGTGCGTGTGGACGCGAAGTTAAGGATTTGACCGCGCACAATCCCAA
TGCCTCGGTCATCTGAGGCATTCAGCTCCAGGACCATGGACTTGAACTGC
TGAAGGGAATACAATTGGCGAGCGCAGGCCAGGATTG

BS15787.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG5313-PA 999 RfC3-RA 179..999 837..17 3855 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
RfC3-RA 1134 CG5313-RA 254..1076 837..15 3965 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 14:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10419555..10419930 837..462 1805 98.7 Minus
2L 23513712 2L 10419992..10420205 460..247 1040 99.1 Minus
2L 23513712 2L 10420401..10420554 168..15 770 100 Minus
2L 23513712 2L 10420268..10420345 246..169 360 97.4 Minus
Blast to na_te.dros performed on 2015-02-02 14:08:29 has no hits.

BS15787.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:35 Download gff for BS15787.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC3-PA 179..999 17..837 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:31 Download gff for BS15787.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5313-PA 179..999 17..837 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:14:47 Download gff for BS15787.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 254..1076 15..837 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:51:42 Download gff for BS15787.3prime
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 254..1076 15..837 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:51:42 Download gff for BS15787.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10419555..10419930 462..837 98 -> Minus
2L 10419991..10420205 247..461 98 -> Minus
2L 10420268..10420345 169..246 97 -> Minus
2L 10420401..10420554 15..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:14:47 Download gff for BS15787.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10419555..10419930 462..837 98 -> Minus
arm_2L 10419991..10420205 247..461 98 -> Minus
arm_2L 10420268..10420345 169..246 97 -> Minus
arm_2L 10420401..10420554 15..168 100   Minus

BS15787.5prime Sequence

886 bp (789 high quality bases) assembled on 2006-12-21

> BS15787.5prime
GAAGTTATCAGTCGACATGTCGGAAACCAGTGGACCCGCAGTGCGCATGC
CTTGGGTGGAAAAGTACAGACCAAGCGGTCTCGATGATTTGATATCTCAC
GAGGAAATAATATCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCC
CCATTTGCTGTTCTACGGACCACCTGGCACGGGAAAAACGAGTACAATCC
TGGCCTGCGCTCGCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTC
CTGGAGCTGAATGCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCA
AATCCTTAACTTCGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGC
TGATCATTTTGGACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCC
CTGCGCCGCATAATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGAT
TTGCAATTATTTGAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCC
GTTTTCGGTTCGCTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAA
AAAATCATCGAAGCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGC
ACTGCTGACCCTGGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGC
AGAGTACCGTGATGGCATTTGATACGGTCAACGAGGATAACGTCTACATG
TGCGTGGGCTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTT
GCTATCTGGCAGTAGCTTGGAGGACTCCTTCAAACTGTCGAAAGTGCCAA
GTACGCAAGAGGTCTCGCTCTGGAAGACATCATTACAGATTTGCATTTGT
TCGTTATGAGACTTGAGCTGCCTATGTCGGTCATGA

BS15787.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5313-PA 999 RfC3-RA 1..768 17..784 3665 99 Plus
CG5313-PA 999 RfC3-RA 767..871 782..886 450 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
RfC3-RA 1134 CG5313-RA 76..946 17..886 4180 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10419480..10419930 120..570 2195 99.1 Plus
2L 23513712 2L 10419992..10420204 572..784 1035 99.1 Plus
2L 23513712 2L 10420268..10420345 785..862 345 96.2 Plus
2L 23513712 2L 10419358..10419423 54..119 330 100 Plus
2L 23513712 2L 10419265..10419303 17..55 195 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:46:55 has no hits.

BS15787.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:36 Download gff for BS15787.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC3-PA 1..870 17..885 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:32 Download gff for BS15787.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5313-PA 1..870 17..885 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:53:19 Download gff for BS15787.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 76..945 17..885 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:10:16 Download gff for BS15787.5prime
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 76..945 17..885 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:10:16 Download gff for BS15787.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10419265..10419302 17..54 100 -> Plus
2L 10419359..10419423 55..119 100 -> Plus
2L 10419480..10419930 120..570 99 -> Plus
2L 10419991..10420205 571..784 98 -> Plus
2L 10420268..10420345 785..862 96 -> Plus
2L 10420401..10420423 863..885 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:53:19 Download gff for BS15787.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10419265..10419302 17..54 100 -> Plus
arm_2L 10419359..10419423 55..119 100 -> Plus
arm_2L 10419480..10419930 120..570 99 -> Plus
arm_2L 10419991..10420205 571..784 98 -> Plus
arm_2L 10420268..10420345 785..862 96 -> Plus
arm_2L 10420401..10420423 863..885 100   Plus

BS15787.complete Sequence

1031 bp assembled on 2006-11-29

GenBank Submission: FJ637968

> BS15787.complete
GAAGTTATCAGTCGACATGTCGGAAACCAGTGGACCCGCAGTGCGCATGC
CTTGGGTGGAAAAGTACAGACCAAGCGGTCTCGATGATTTGATATCTCAC
GAGGAAATAATATCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCC
CCATTTGCTGTTCTACGGACCACCTGGCACGGGAAAAACGAGTACAATCC
TGGCCTGCGCTCGCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTC
CTGGAGCTGAATGCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCA
AATCCTTAACTTCGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGC
TGATCATTTTGGACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCC
CTGCGCCGCATAATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGAT
TTGCAATTATTTGAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCC
GTTTTCGGTTCGCTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAA
AAAATCATCGAAGCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGC
ACTGCTGACCCTGGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGC
AGAGTACCGTGATGGCATTTGATACGGTCAACGAGGATAACGTCTACATG
TGCGTGGGCTATCCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTT
GCTATCTGGCAGTAGCTTGGAGGACTCCTTCAAAACTGTCGAAAGTGCCA
AGTACGCAAGAGGTCTCGCTCTGGAAGACATCATTACAGAATTGCATTTG
TTCGTTATGAGACTTGAGCTGCCTATGTCGGTCATGAACAAGCTTATTGT
AAAGCTAGCTCAGATCGAGGAGAGATTGGCCAAAGGATGTACAGAAGTGG
CTCAAACTGCAGCTCTGGTAGCCGCCTTCTTTATTTGCCGAGATATGGTT
TCAATGGAGAAGTGAAAGCTTTCTAGACCAT

BS15787.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
RfC3-RA 999 CG5313-PA 1..999 17..1015 4860 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
RfC3-RA 1134 CG5313-RA 76..1076 17..1017 4870 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10419480..10419930 120..570 2195 99.1 Plus
2L 23513712 2L 10419992..10420205 572..785 1040 99.1 Plus
2L 23513712 2L 10420401..10420554 864..1017 770 100 Plus
2L 23513712 2L 10420268..10420345 786..863 360 97.4 Plus
2L 23513712 2L 10419358..10419423 54..119 330 100 Plus
2L 23513712 2L 10419265..10419303 17..55 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:01:32 has no hits.

BS15787.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:03 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 1..999 17..1015 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:30 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 55..1055 17..1017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:48 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 76..1073 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:03 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 55..1055 17..1017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:02 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
RfC3-RA 76..1073 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:02 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10419265..10419302 17..54 100 -> Plus
2L 10419359..10419423 55..119 100 -> Plus
2L 10419480..10419930 120..570 99 -> Plus
2L 10419991..10420205 571..785 98 -> Plus
2L 10420268..10420345 786..863 97 -> Plus
2L 10420401..10420551 864..1014 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:48 Download gff for BS15787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10419265..10419302 17..54 100 -> Plus
arm_2L 10419359..10419423 55..119 100 -> Plus
arm_2L 10419480..10419930 120..570 99 -> Plus
arm_2L 10419991..10420205 571..785 98 -> Plus
arm_2L 10420268..10420345 786..863 97 -> Plus
arm_2L 10420401..10420551 864..1014 100   Plus

BS15787.pep Sequence

Translation from 16 to 1014

> BS15787.pep
MSETSGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFY
GPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFA
STRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS
KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLA
KGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSS
LEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI
EERLAKGCTEVAQTAALVAAFFICRDMVSMEK*

BS15787.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
RfC3-PA 332 CG5313-PA 1..332 1..332 1670 100 Plus
CG8142-PA 353 CG8142-PA 31..303 12..273 533 40.1 Plus
RfC4-PA 331 CG14999-PA 16..329 11..326 486 34.4 Plus
RfC38-PB 356 CG6258-PB 4..339 13..321 267 25.9 Plus
RfC38-PA 356 CG6258-PA 4..339 13..321 267 25.9 Plus