Clone Sequence Records
BS15788.3prime Sequence
834 bp (721 high quality bases) assembled on 2006-12-21
> BS15788.3prime
ATGGTCTAGAAAGCTTCTAACTTTTACTTCCGCTCTCCTGCTGCTGCTTG
GCCTTAAGTCGCTCCTGCGCCAGCCTGCGGTTTTCCGCAATCCTGGCCAT
CTGTTCGTTGGATAATTTCTTAGCCGCCGGCGTGGGAGGCTGTGAGGGAG
GCAGCGGCTGACCATAGTCGCTGATGTCCATCGATGCCAACGGAGCTCCA
TTCCGATCGAAGGCCGGAGCCACAGAAGCTCCACTTCTGTCGAAGGTCGC
ATTTACACCGGAGTACGGCGTGGACATTACAGCATTGCCGCGGGAGAATG
ACGGAGTAGCCAGCGTGCTGTTACTGGAAGCAGTAGACATTTTCCACTGC
TGCGGGCTGGGAGGCGCCAGCCTGGACATGGCAATCTGTTCACCTAGCAG
GGCGTCGAACTCATCAAAGGGTTCATCGCCGGCACCTTCCTGTTGCTCAT
CCTGCGCCTCCTCCAGGGCCTCCGCTTCGTGGGCGCGCATCTGCTCCAGC
TGACCGAGTCGATATCGCGCCATGTGCACTTGGAGGGGTTTCTTCTTGCC
CAGCCGTTCGATATTGTTAAGCACATCGTCAAAGGTGTAGGTGGGATACA
TACGATGGCCCCAGTGCTGCAGGCGGCGAAGCACCTCGTCGAGATCGGTT
TTCTCGTAACCCTTGCCCTTGAATTTGATGTCCTTAAAATAATCTTCGAT
GGTCTGGATGCCACGAGGACCTCGAAGTGTTTCCACAGTGAGTCGCGGTC
GGGGATTTCTCACAGCTCGCTTCTTAGGCTCCACTATCTGGGCATCCTGG
CTACCAGGTTCTACGCCGTTGTCCTCGTCGTCCG
BS15788.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-PB | 963 | CG10336-RB | 146..963 | 834..17 | 4090 | 100 | Minus |
| CG10336-PA | 924 | CG10336-RA | 107..924 | 834..17 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-RC | 1313 | CG10336-RC | 307..1124 | 834..17 | 4090 | 100 | Minus |
| CG10336-RA | 1216 | CG10336-RA | 210..1027 | 834..17 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18689900..18690717 | 834..17 | 4090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:51:39 has no hits.
BS15788.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:37 Download gff for
BS15788.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-PB | 146..963 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:33 Download gff for
BS15788.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-PA | 107..924 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 18:37:51 Download gff for
BS15788.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RA | 210..1027 | 17..834 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:04 Download gff for
BS15788.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RA | 210..1027 | 17..834 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:04 Download gff for
BS15788.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18689900..18690717 | 17..834 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 18:37:51 Download gff for
BS15788.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18689900..18690717 | 17..834 | 100 | | Minus |
BS15788.5prime Sequence
862 bp (760 high quality bases) assembled on 2006-12-21
> BS15788.5prime
GAAGTTATCAGTCGACATGGCATCCCTGTTCGGAGATGATGGTGTGGATG
ACCTATTCAATGACAACATTCCGACTGACCCGGATCAGCTGCCCAGCGAT
GGCGAAGGCGAAAAGCTGTTTGCGGACGACGAGGACAACGGCGTAGAACC
TGGTAGCCAGGATGCCCAGATAGTGGAGCCTAAGAAGCGAGCTGTGAGAA
ATCCCCGACCGCGACTCACTGTGGAAACACTTCGAGGTCCTCGTGGCATC
CAGACCATCGAAGATTATTTTAAGGACATCAAATTCAAGGGCAAGGGTTA
CGAGAAAACCGATCTCGACGAGGTGCTTCGCCGCCTGCAGCACTGGGGCC
ATCGTATGTATCCCACCTACACCTTTGACGATGTGCTTAACAATATCGAA
CGGCTGGGCAAGAAGAAACCCCTCCAAGTGCACATGGCGCGATATCGACT
CGGTCAGCTGGAGCAGATGCGCGCCCACGAAGCGGAGGCCCTGGAGGAGG
CGCAGGATGAGCAACAGGAAGGTGCCGGCGATGAACCCTTTGATGAGTTC
GACGCCCTGCTAGGTGAACAGATTGCCATGTCCAGGCTGGCGCCTCCCAG
CCCGCAGCAGTGGAAAATGTCTACTGCTTCCAGTAACAGCACGCTGGCTA
CTCCGTCATTCTCCCGCGGCAATGCTGTAATGTCCACGCCGTACTCCGGT
GTAAATGCGACCTTCGACAGAAGTGGAGCTTCTGTGGCTCCGGCCTTCGA
TCGGAATGGAGCTCCGTTGGCATCGATGGACATCAGCGACTATGGTCAGC
CGCTGCCTCCCTCACAGCCTCCCACGCCCGCGGCTAAGAAATTATCCCAC
GAACAGATGGCC
BS15788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-PB | 963 | CG10336-RB | 40..885 | 17..862 | 4180 | 99.7 | Plus |
| CG10336-PA | 924 | CG10336-RA | 1..846 | 17..862 | 4180 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 12:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-RC | 1313 | CG10336-RC | 201..1046 | 17..862 | 4200 | 99.8 | Plus |
| CG10336-RA | 1216 | CG10336-RA | 104..949 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 12:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18689794..18690639 | 17..862 | 4200 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 12:28:10 has no hits.
BS15788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:38 Download gff for
BS15788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-PB | 37..885 | 12..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:35 Download gff for
BS15788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:36:59 Download gff for
BS15788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RA | 101..949 | 12..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:01:30 Download gff for
BS15788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RA | 101..949 | 12..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 14:01:30 Download gff for
BS15788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18689791..18690639 | 12..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:36:59 Download gff for
BS15788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18689791..18690639 | 12..862 | 99 | | Plus |
BS15788.complete Sequence
956 bp assembled on 2006-11-29
GenBank Submission: FJ637969
> BS15788.complete
GAAGTTATCAGTCGACATGGCATCCCTGTTCGGAGATGATGGTGTGGATG
ACCTATTCAATGACAACATTCCGACTGACCCGGATCAGCTGCCCAGCGAT
GGCGAAGGCGAAAAGCTGTTTGCGGACGACGAGGACAACGGCGTAGAACC
TGGTAGCCAGGATGCCCAGATAGTGGAGCCTAAGAAGCGAGCTGTGAGAA
ATCCCCGACCGCGACTCACTGTGGAAACACTTCGAGGTCCTCGTGGCATC
CAGACCATCGAAGATTATTTTAAGGACATCAAATTCAAGGGCAAGGGTTA
CGAGAAAACCGATCTCGACGAGGTGCTTCGCCGCCTGCAGCACTGGGGCC
ATCGTATGTATCCCACCTACACCTTTGACGATGTGCTTAACAATATCGAA
CGGCTGGGCAAGAAGAAACCCCTCCAAGTGCACATGGCGCGATATCGACT
CGGTCAGCTGGAGCAGATGCGCGCCCACGAAGCGGAGGCCCTGGAGGAGG
CGCAGGATGAGCAACAGGAAGGTGCCGGCGATGAACCCTTTGATGAGTTC
GACGCCCTGCTAGGTGAACAGATTGCCATGTCCAGGCTGGCGCCTCCCAG
CCCGCAGCAGTGGAAAATGTCTACTGCTTCCAGTAACAGCACGCTGGCTA
CTCCGTCATTCTCCCGCGGCAATGCTGTAATGTCCACGCCGTACTCCGGT
GTAAATGCGACCTTCGACAGAAGTGGAGCTTCTGTGGCTCCGGCCTTCGA
TCGGAATGGAGCTCCGTTGGCATCGATGGACATCAGCGACTATGGTCAGC
CGCTGCCTCCCTCACAGCCTCCCACGCCGGCGGCTAAGAAATTATCCAAC
GAACAGATGGCCAGGATTGCGGAAAACCGCAGGCTGGCGCAGGAGCGACT
TAAGGCCAAGCAGCAGCAGGAGAGCGGAAGTAAAAGTTAGAAGCTTTCTA
GACCAT
BS15788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-RC | 924 | CG10336-PC | 1..924 | 17..940 | 4620 | 100 | Plus |
| CG10336-RA | 924 | CG10336-PA | 1..924 | 17..940 | 4620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-RC | 1313 | CG10336-RC | 201..1124 | 17..940 | 4620 | 100 | Plus |
| CG10336-RA | 1216 | CG10336-RA | 104..1027 | 17..940 | 4620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18689794..18690717 | 17..940 | 4620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:57:16 has no hits.
BS15788.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:32:04 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RC | 1..924 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:04:31 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RC | 145..1071 | 12..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:09 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RA | 104..1027 | 17..940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:32:05 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RC | 145..1071 | 12..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:59 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10336-RA | 104..1027 | 17..940 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:59 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18689794..18690717 | 17..940 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:09 Download gff for
BS15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18689794..18690717 | 17..940 | 100 | | Plus |
BS15788.pep Sequence
Translation from 16 to 939
> BS15788.pep
MASLFGDDGVDDLFNDNIPTDPDQLPSDGEGEKLFADDEDNGVEPGSQDA
QIVEPKKRAVRNPRPRLTVETLRGPRGIQTIEDYFKDIKFKGKGYEKTDL
DEVLRRLQHWGHRMYPTYTFDDVLNNIERLGKKKPLQVHMARYRLGQLEQ
MRAHEAEALEEAQDEQQEGAGDEPFDEFDALLGEQIAMSRLAPPSPQQWK
MSTASSNSTLATPSFSRGNAVMSTPYSGVNATFDRSGASVAPAFDRNGAP
LASMDISDYGQPLPPSQPPTPAAKKLSNEQMARIAENRRLAQERLKAKQQ
QESGSKS*
BS15788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10336-PC | 307 | CG10336-PC | 1..307 | 1..307 | 1598 | 100 | Plus |
| CG10336-PA | 307 | CG10336-PA | 1..307 | 1..307 | 1598 | 100 | Plus |
