Clone BS15796 Report

Search the DGRC for BS15796

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:157
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG12796-RA
Protein status:BS15796.pep: full length peptide match
Sequenced Size:1148

Clone Sequence Records

BS15796.complete Sequence

1148 bp assembled on 2009-12-07

GenBank Submission: KX801438

> BS15796.complete
GAAGTTATCAGTCGACATGGCATTTACCAGCAGCTCATCGCCCGCTTGGG
ATTATCGAAGCTCCCCGGAAGCGTTGGGTGTCGTCCCGTTCCTGTGGCAG
CACCAGAACGCCACGGAAACGCCAACGGAAATAACCCTCCAGGCGACCAG
TTTCGGTGCCGGCCATCTGCTGTGGCTAGCCATCAATGCCTTCTTGTTTG
TCCTTATCCTGGGCGGCAATATTCTGACCATTGTGGCGGTGCGCACCTGC
CGCCACCTGCGATCGGTCATCTCCAATCTGTTCATCCTGTCGCTGGCCGT
CTCCGACTTCTGTGTGGGACTGGCACTGCCCTATCATCTGGTATTTTACA
TGGGCTCGGACATTGGCGCCATGAGAGGTCCCTGCCTGCTGCGCTTCTTC
CTGCTCATCTGCGCCTGCTGCGTGTCCATGTTGACTCTGATCTCGATTGC
GGTGGATCGGTATATAGCAGTCGTCTATGCTCTGCACTATAGAAGATACA
TGACCCGTCGAGTGGCATATAGCATCATCATATTCAATTGGTGCTTGGGT
GCATTGGTGGCTCTGCTGCCAGTGTTCTGGAATCGATGGCCGGATGCACA
GGCGTGCGAATTCGACGAAGTTCTCGCGCCTGGTTACATTGCCGGAGTGA
TAACGCCGGGTTTTGTGATCATCTGGATCTGTATGTTCCTCGTCTACTGG
CGCATCATGCGCGAGGCATCCAAGCAGGCGCTGCGATTGCGACAGTCGGT
GGTCTACAACACGGACGAGGCCACCACCATGCGAAATCTGCTGCTCCATC
CAGACTGGAAGAGCGTCCAGATTGTGGTCTTCATCATGGGCTGCTTCACG
CTCTGTTGGCTACCGTACTTCTGTGTGGCCATTGCCCAGCTATTTAGCAT
CTGCCAGAGCAGCTCGATGATCTACAAGACGACGTTCTCTCTGGCCATTG
CCAACTCTGCTCTCAATCCGATTATCTACTCGTGGAAGAACTCTGGCTTT
CGGCGAGCCTTTGTCCAAACATTATGCTGCCGAACGGCGAGGCAGTGCGA
GGATCAATTGCCGGCGGACAGCAAGCACCGCATGGAGGCCACATCCTCAT
CTCAGGAGATCAAACCGAAGGCCACTCAGTGAAAGCTTTCTAGACCAT

BS15796.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-RA 1116 CG12796-PA 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-RA 1218 CG12796-RA 23..1139 16..1132 5585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6831476..6832114 1132..494 3195 100 Minus
X 23542271 X 6832183..6832662 495..16 2400 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:52:52 has no hits.

BS15796.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:39 Download gff for BS15796.complete
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 1..1115 17..1131 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:00:22 Download gff for BS15796.complete
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 24..1138 17..1131 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:46 Download gff for BS15796.complete
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 1..1115 17..1131 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:59:02 Download gff for BS15796.complete
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 24..1138 17..1131 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:59:02 Download gff for BS15796.complete
Subject Subject Range Query Range Percent Splice Strand
X 6831477..6832112 496..1131 100 <- Minus
X 6832183..6832661 17..495 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:00:22 Download gff for BS15796.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6725510..6726145 496..1131 100 <- Minus
arm_X 6726216..6726694 17..495 100   Minus

BS15796.3prime Sequence

828 bp (807 high quality bases) assembled on 2006-12-21

> BS15796.3prime
ATGGTCTAGAAAGCTTTCCCCTATTGGCCTTCGGTTTGATCTCCTGAGAT
GAGGATGTGGCCTCCATGCGGTGCTTGCTGTCCGCCGGCAATTGCTCCTC
GCACTGCCTCGCCGTTCGGCAGCATAATGTTTGGACAAAGGCTCGCCGAA
AGCCAGAGTTCTTCCACGAGTAGATAATCGGATTGAGAGCAGAGTTGGCA
ATGGCCAGAGAGAACGTCGTCTTGTAGATCATCGAGCTGCTCTGGCAGAT
GCTAAATAGCTGGGCAATGGCCACACAGAAGTACGGTAGCCAACAGAGCG
TGAAGCAGCCCATGATGAAGACCACAATCTGGACGCTCTTCCAGTCTGGA
TGGAGCAGCAGATTTCGCATGGTGGTGGCCTCGTCCGTGTTGTAGACCAC
CGACTGTCGCAATCGCAGCGCCTGCTTGGATGCCTCGCGCATGATGCGCC
AGTAGACGAGGAACATACAGATCCAGATGATCACAAAACCCGGCGTTATC
ACTCCGGCAATGTAACCAGGCGCGAGAACTTCGTCGAATTCGCACGCCTG
TGCATCCGGCCATCGATTCCAGAACACTGGCAGCAGAGCCACCAATGCAC
CCAAGCACCAATTGAATATGATGATGCTATATGCCACTCGACGGGTCATG
TATCTTCTATAGTGCAGAGCATAGACGACTGCTATATACCGATCCACCGC
AATCGAGATCAGAGTCAACATGGACACGCAGCAGGCGCAGATGAGCAGGA
AGAAGCGCAGCAGGCAGGGACCTCTCATGGCGCCAATGTCCGAGCCCATG
TAAAATACCAGATGATAGGGCAGTGCCA

BS15796.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-PA 1116 CG12796-RA 305..1108 828..25 3995 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-RA 1218 CG12796-RA 328..1131 828..25 4005 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 16:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6831484..6832114 25..655 3140 99.8 Plus
X 23542271 X 6832183..6832357 654..828 875 100 Plus
Blast to na_te.dros performed on 2015-01-30 16:52:05 has no hits.

BS15796.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:53 Download gff for BS15796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-PA 306..1116 17..827 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:56 Download gff for BS15796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-PA 306..1116 17..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 15:54:12 Download gff for BS15796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 329..1131 25..827 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:11:08 Download gff for BS15796.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 329..1131 25..827 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:11:08 Download gff for BS15796.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6831484..6832112 25..653 99 <- Plus
X 6832183..6832356 654..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 15:54:12 Download gff for BS15796.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6725517..6726145 25..653 99 <- Plus
arm_X 6726216..6726389 654..827 100   Plus

BS15796.5prime Sequence

871 bp (724 high quality bases) assembled on 2006-12-21

> BS15796.5prime
GAAGTTATCAGTCGACATGGCATTTACCAGCAGCTCATCGCCCGCTTGGG
ATTATCGAAGCTCCCCGGAAGCGTTGGGTGTCGTCCCGTTCCTGTGGCAG
CACCAGAACGCCACGGAAACGCCAACGGAAATAACCCTCCAGGCGACCAG
TTTCGGTGCCGGCCATCTGCTGTGGCTAGCCATCAATGCCTTCTTGTTTG
TCCTTATCCTGGGCGGCAATATTCTGACCATTGTGGCGGTGCGCACCTGC
CGCCACCTGCGATCGGTCATCTCCAATCTGTTCATCCTGTCGCTGGCCGT
CTCCGACTTCTGTGTGGGACTGGCACTGCCCTATCATCTGGTATTTTACA
TGGGCTCGGACATTGGCGCCATGAGAGGTCCCTGCCTGCTGCGCTTCTTC
CTGCTCATCTGCGCCTGCTGCGTGTCCATGTTGACTCTGATCTCGATTGC
GGTGGATCGGTATATAGCAGTCGTCTATGCTCTGCACTATAGAAGATACA
TGACCCGTCGAGTGGCATATAGCATCATCATATTCAATTGGTGCTTGGGT
GCATTGGTGGCTCTGCTGCCAGTGTTCTGGAATCGATGGCCGGATGCACA
GGCGTGCGAATTCGACGAAGTTCTCGCGCCTGGTTACATTGCCGGAGTGA
TAACGCCGGGTTTTGTGATCATCTGGATCTGTATGTTCCTCGTCTACTGG
CGCATCATGCGCGAGGCATCCAAGCAGGCGCTGCGATTGCGACAGTCGGT
GGTCTACAACACGGACGAGGCCACCACCATGCGAAATCTGCTGCTCCTCC
AGACTGGAAGAGCGTCCAGATTGTGGTCTTCATCATGGGCTGCTTCACGC
TCTGTTGGCTACCGTACTTCT

BS15796.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 19:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-PA 1116 CG12796-RA 1..781 17..797 3905 100 Plus
CG12796-PA 1116 CG12796-RA 783..856 798..871 370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-RA 1218 CG12796-RA 23..879 16..871 4260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6832183..6832662 495..16 2400 100 Minus
X 23542271 X 6831736..6832114 871..494 1845 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:55:09 has no hits.

BS15796.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 11:37:54 Download gff for BS15796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-PA 1..856 17..871 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 13:17:57 Download gff for BS15796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-PA 1..856 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:21:43 Download gff for BS15796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 14..879 7..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:57:42 Download gff for BS15796.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12796-RA 14..879 7..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:57:42 Download gff for BS15796.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6831736..6832112 496..871 99 <- Minus
X 6832183..6832671 7..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:21:43 Download gff for BS15796.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6725769..6726145 496..871 99 <- Minus
arm_X 6726216..6726704 7..495 99   Minus

BS15796.pep Sequence

Translation from 16 to 1131

> BS15796.pep
MAFTSSSSPAWDYRSSPEALGVVPFLWQHQNATETPTEITLQATSFGAGH
LLWLAINAFLFVLILGGNILTIVAVRTCRHLRSVISNLFILSLAVSDFCV
GLALPYHLVFYMGSDIGAMRGPCLLRFFLLICACCVSMLTLISIAVDRYI
AVVYALHYRRYMTRRVAYSIIIFNWCLGALVALLPVFWNRWPDAQACEFD
EVLAPGYIAGVITPGFVIIWICMFLVYWRIMREASKQALRLRQSVVYNTD
EATTMRNLLLHPDWKSVQIVVFIMGCFTLCWLPYFCVAIAQLFSICQSSS
MIYKTTFSLAIANSALNPIIYSWKNSGFRRAFVQTLCCRTARQCEDQLPA
DSKHRMEATSSSQEIKPKATQ*

BS15796.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12796-PA 371 CG12796-PA 1..371 1..371 1957 100 Plus
Octbeta1R-PB 421 CG6919-PB 100..419 47..336 272 29.2 Plus
Octbeta1R-PC 428 CG6919-PC 100..419 47..336 272 29.2 Plus
Octbeta1R-PE 508 CG6919-PE 100..419 47..336 272 29.2 Plus
Octbeta1R-PA 508 CG6919-PA 100..419 47..336 272 29.2 Plus