Clone Sequence Records
BS15806.3prime Sequence
894 bp (799 high quality bases) assembled on 2007-04-16
> BS15806.3prime
ATGGTCTAGAAAGCTTCTAAGCCATTTGAGAGTACGAGGAATACAGCTTG
TAGTTGCGACGTCGGTAGTAGATCATGAGGCCATAGCTGGCGAACAGCAG
CGCAATTACGATTAAAATGAGAATGCCCGTCGCAGTTCCAAGATTGGCTT
CCTCATAAGTCATCATCATCGTGGATAGCTTGCACTCGCGCTCCCAATCT
ACGGGCAAAACGTCCTCGTAGATGTTCATAAGTTTGGTCAGCGGACAGGA
AGGCCCACAACCAGGTATGTCCAGAGGCAGGGGTTCAGCTGTGGTGTTCT
TGTAGAAAATAGAGACCAACGGGGTGTTGGTCTCATCCACACGCAACTCC
ATCATTATGCACGCCGTGTAGGGAGGACTGTGCAGCTCAAATAATTTCAG
CGCATTCAAAACGCTGGCTACCGTGGTGTCATGAGCACTGTAGACCCACA
TCGAACGATCTGGTTTTAGGCTCCCGGAGGATTTCTCTTTAAACCGCTGG
AATATGTCCTTTAGCAAAGGCCCCGCCTTCAGTCTCGCCAGCTTTCGCGT
ATAAGAGCTGATGGCGAAAGCGAAATTCGATACATACGTGAGCTCCTCTC
TCCCATAAACCATTTTAGTCCATTTTGGCAGTGTCATGTTGTACAGATTC
TCAATGAACAAGGTGTTATTCAAATACTGGGCATCAATGAAGGTCTTCAC
GGGGCGTCCGCCTTTTTCGCTCAAATAAGCAAACAGATTTCGGTGTTTTT
CGGTCAAGGCCTTGAATTCTGGCGATGATTCCAGGCTGGCCAGCTCATAG
TCATAGGCAGGACAAGGTGCCTTAGCGGCCAGTATGGGATCCTCCCTCTC
GGGCGAGGTGTGAATGGGTATGGGTTGCCAGTTGATGTCCGTGT
BS15806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7899-PB | 1368 | Acph-1-RB | 491..1368 | 894..17 | 4390 | 100 | Minus |
CG7899-PA | 1317 | Acph-1-RA | 440..1317 | 894..17 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RA | 1944 | CG7899-RA | 627..1504 | 894..17 | 4390 | 100 | Minus |
Acph-1-RB | 1889 | CG7899-RB | 572..1449 | 894..17 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29992083..29992591 | 386..894 | 2545 | 100 | Plus |
3R | 32079331 | 3R | 29991753..29992014 | 126..387 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 29991584..29991694 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:43:48 has no hits.
BS15806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:10 Download gff for
BS15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7899-PA | 440..1317 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:41:59 Download gff for
BS15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 572..1456 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:38 Download gff for
BS15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 572..1456 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:38 Download gff for
BS15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29991577..29991693 | 11..126 | 98 | <- | Plus |
3R | 29991754..29992012 | 127..385 | 100 | <- | Plus |
3R | 29992083..29992591 | 386..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:41:59 Download gff for
BS15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25817299..25817415 | 11..126 | 98 | <- | Plus |
arm_3R | 25817476..25817734 | 127..385 | 100 | <- | Plus |
arm_3R | 25817805..25818313 | 386..894 | 100 | | Plus |
BS15806.5prime Sequence
849 bp (796 high quality bases) assembled on 2007-05-07
> BS15806.5prime
GAAGTTATCAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAA
CAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATC
TTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCA
TGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGC
CAGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACG
CCCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCC
CACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACC
TGGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATAC
TCCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGAT
GAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACA
TCTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCC
GAGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGA
CTATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCG
AAAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCC
GTGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGA
GAATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGA
GAGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTA
BS15806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7899-PB | 1368 | Acph-1-RB | 1..833 | 17..849 | 4165 | 100 | Plus |
CG7899-PA | 1317 | Acph-1-RA | 1..782 | 68..849 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RB | 1889 | CG7899-RB | 82..914 | 17..849 | 4165 | 100 | Plus |
Acph-1-RA | 1944 | CG7899-RA | 149..969 | 29..849 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29992249..29992772 | 849..326 | 2620 | 100 | Minus |
3R | 32079331 | 3R | 29992986..29993195 | 226..17 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 29992829..29992927 | 325..227 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:58:05 has no hits.
BS15806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:11 Download gff for
BS15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7899-PB | 1..832 | 17..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:55:40 Download gff for
BS15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 76..913 | 8..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:27:17 Download gff for
BS15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 76..913 | 8..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:27:17 Download gff for
BS15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29992250..29992772 | 326..848 | 100 | <- | Minus |
3R | 29992829..29992927 | 227..325 | 100 | <- | Minus |
3R | 29992986..29993201 | 8..226 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:55:40 Download gff for
BS15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25817972..25818494 | 326..848 | 100 | <- | Minus |
arm_3R | 25818551..25818649 | 227..325 | 100 | <- | Minus |
arm_3R | 25818708..25818923 | 8..226 | 98 | | Minus |
BS15806.complete Sequence
1400 bp assembled on 2007-05-07
GenBank Submission: FJ638871
> BS15806.complete
GAAGTTATCAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAA
CAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATC
TTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCA
TGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGC
CAGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACG
CCCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCC
CACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACC
TGGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATAC
TCCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGAT
GAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACA
TCTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCC
GAGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGA
CTATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCG
AAAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCC
GTGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGA
GAATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGA
GAGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTAT
ACGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATT
CCAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAAAACCAGATCGTTCGA
TGTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCG
CTGAAATTATTTGAGCTGCACAGTCCTCCCTACACGGCGTGCATAATGAT
GGAGTTGCGTGTGGATGAGACCAACACCCCGTTGGTCTCTATTTTCTACA
AGAACACCACAGCTGAACCCCTGCCTCTGGACATACCTGGTTGTGGGCCT
TCCTGTCCGCTGACCAAACTTATGAACATCTACGAGGACGTTTTGCCCGT
AGATTGGGAGCGCGAGTGCAAGCTATCCACGATGATGATGACTTATGAGG
AAGCCAATCTTGGAACTGCGACGGGCATTCTCATTTTAATCGTAATTGCG
CTGCTGTTCGCCAGCTATGGCCTCATGATCTACTACCGACGTCGCAACTA
CAAGCTGTATTCCTCGTACTCTCAAATGGCTTAGAAGCTTTCTAGACCAT
BS15806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RB | 1368 | CG7899-PB | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Acph-1-RA | 1317 | CG7899-PA | 1..1317 | 68..1384 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-RB | 1889 | CG7899-RB | 82..1449 | 17..1384 | 6840 | 100 | Plus |
Acph-1-RA | 1944 | CG7899-RA | 149..1504 | 29..1384 | 6780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29992083..29992772 | 1015..326 | 3450 | 100 | Minus |
3R | 32079331 | 3R | 29991753..29992014 | 1275..1014 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 29992986..29993195 | 226..17 | 1050 | 100 | Minus |
3R | 32079331 | 3R | 29991584..29991694 | 1384..1274 | 555 | 100 | Minus |
3R | 32079331 | 3R | 29992829..29992927 | 325..227 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:44 has no hits.
BS15806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:57 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:03 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 76..1456 | 8..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:59 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 89..1449 | 24..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:57 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 76..1456 | 8..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:49 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acph-1-RB | 89..1449 | 24..1384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:49 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29991584..29991693 | 1275..1384 | 100 | <- | Minus |
3R | 29991754..29992012 | 1016..1274 | 100 | <- | Minus |
3R | 29992083..29992772 | 326..1015 | 100 | <- | Minus |
3R | 29992829..29992927 | 227..325 | 100 | <- | Minus |
3R | 29992986..29993188 | 24..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:59 Download gff for
BS15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25817306..25817415 | 1275..1384 | 100 | <- | Minus |
arm_3R | 25817476..25817734 | 1016..1274 | 100 | <- | Minus |
arm_3R | 25817805..25818494 | 326..1015 | 100 | <- | Minus |
arm_3R | 25818551..25818649 | 227..325 | 100 | <- | Minus |
arm_3R | 25818708..25818910 | 24..226 | 100 | | Minus |
BS15806.pep Sequence
Translation from 16 to 1383
> BS15806.pep
MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA
EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD
LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN
LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS
LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM
TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE
KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD
ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE
CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS
YSQMA*
BS15806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acph-1-PB | 455 | CG7899-PB | 1..455 | 1..455 | 2436 | 100 | Plus |
Acph-1-PA | 438 | CG7899-PA | 1..438 | 18..455 | 2353 | 100 | Plus |
CG9449-PK | 391 | CG9449-PK | 36..370 | 65..396 | 658 | 38.4 | Plus |
CG9449-PH | 404 | CG9449-PH | 49..383 | 65..396 | 658 | 38.4 | Plus |
CG9449-PG | 404 | CG9449-PG | 49..383 | 65..396 | 658 | 38.4 | Plus |