Clone BS15806 Report

Search the DGRC for BS15806

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptAcph-1-RB
Protein status:BS15806.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15806.3prime Sequence

894 bp (799 high quality bases) assembled on 2007-04-16

> BS15806.3prime
ATGGTCTAGAAAGCTTCTAAGCCATTTGAGAGTACGAGGAATACAGCTTG
TAGTTGCGACGTCGGTAGTAGATCATGAGGCCATAGCTGGCGAACAGCAG
CGCAATTACGATTAAAATGAGAATGCCCGTCGCAGTTCCAAGATTGGCTT
CCTCATAAGTCATCATCATCGTGGATAGCTTGCACTCGCGCTCCCAATCT
ACGGGCAAAACGTCCTCGTAGATGTTCATAAGTTTGGTCAGCGGACAGGA
AGGCCCACAACCAGGTATGTCCAGAGGCAGGGGTTCAGCTGTGGTGTTCT
TGTAGAAAATAGAGACCAACGGGGTGTTGGTCTCATCCACACGCAACTCC
ATCATTATGCACGCCGTGTAGGGAGGACTGTGCAGCTCAAATAATTTCAG
CGCATTCAAAACGCTGGCTACCGTGGTGTCATGAGCACTGTAGACCCACA
TCGAACGATCTGGTTTTAGGCTCCCGGAGGATTTCTCTTTAAACCGCTGG
AATATGTCCTTTAGCAAAGGCCCCGCCTTCAGTCTCGCCAGCTTTCGCGT
ATAAGAGCTGATGGCGAAAGCGAAATTCGATACATACGTGAGCTCCTCTC
TCCCATAAACCATTTTAGTCCATTTTGGCAGTGTCATGTTGTACAGATTC
TCAATGAACAAGGTGTTATTCAAATACTGGGCATCAATGAAGGTCTTCAC
GGGGCGTCCGCCTTTTTCGCTCAAATAAGCAAACAGATTTCGGTGTTTTT
CGGTCAAGGCCTTGAATTCTGGCGATGATTCCAGGCTGGCCAGCTCATAG
TCATAGGCAGGACAAGGTGCCTTAGCGGCCAGTATGGGATCCTCCCTCTC
GGGCGAGGTGTGAATGGGTATGGGTTGCCAGTTGATGTCCGTGT

BS15806.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG7899-PB 1368 Acph-1-RB 491..1368 894..17 4390 100 Minus
CG7899-PA 1317 Acph-1-RA 440..1317 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RA 1944 CG7899-RA 627..1504 894..17 4390 100 Minus
Acph-1-RB 1889 CG7899-RB 572..1449 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992083..29992591 386..894 2545 100 Plus
3R 32079331 3R 29991753..29992014 126..387 1310 100 Plus
3R 32079331 3R 29991584..29991694 17..127 555 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:43:48 has no hits.

BS15806.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:10 Download gff for BS15806.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7899-PA 440..1317 17..894 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:41:59 Download gff for BS15806.3prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 572..1456 11..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:38 Download gff for BS15806.3prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 572..1456 11..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:38 Download gff for BS15806.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29991577..29991693 11..126 98 <- Plus
3R 29991754..29992012 127..385 100 <- Plus
3R 29992083..29992591 386..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:41:59 Download gff for BS15806.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25817299..25817415 11..126 98 <- Plus
arm_3R 25817476..25817734 127..385 100 <- Plus
arm_3R 25817805..25818313 386..894 100   Plus

BS15806.5prime Sequence

849 bp (796 high quality bases) assembled on 2007-05-07

> BS15806.5prime
GAAGTTATCAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAA
CAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATC
TTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCA
TGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGC
CAGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACG
CCCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCC
CACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACC
TGGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATAC
TCCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGAT
GAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACA
TCTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCC
GAGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGA
CTATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCG
AAAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCC
GTGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGA
GAATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGA
GAGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTA

BS15806.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7899-PB 1368 Acph-1-RB 1..833 17..849 4165 100 Plus
CG7899-PA 1317 Acph-1-RA 1..782 68..849 3910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RB 1889 CG7899-RB 82..914 17..849 4165 100 Plus
Acph-1-RA 1944 CG7899-RA 149..969 29..849 4105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992249..29992772 849..326 2620 100 Minus
3R 32079331 3R 29992986..29993195 226..17 1050 100 Minus
3R 32079331 3R 29992829..29992927 325..227 495 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:58:05 has no hits.

BS15806.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:11 Download gff for BS15806.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7899-PB 1..832 17..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:55:40 Download gff for BS15806.5prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 76..913 8..848 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:27:17 Download gff for BS15806.5prime
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 76..913 8..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:27:17 Download gff for BS15806.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29992250..29992772 326..848 100 <- Minus
3R 29992829..29992927 227..325 100 <- Minus
3R 29992986..29993201 8..226 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:55:40 Download gff for BS15806.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25817972..25818494 326..848 100 <- Minus
arm_3R 25818551..25818649 227..325 100 <- Minus
arm_3R 25818708..25818923 8..226 98   Minus

BS15806.complete Sequence

1400 bp assembled on 2007-05-07

GenBank Submission: FJ638871

> BS15806.complete
GAAGTTATCAGTCGACATGTTTTCCCGCAGTCGCTGTGGTTCACTTGTAA
CAAGTGTGGCTCGCAAAATGTGGAACCACCCAAGCCAGCGCTGGCTCATC
TTGATCTGCGTTATATGTTTGCTGTCTTTTGCGCTGGCCAATTCGCTTCA
TGGCTATGCTAATGCTGAAGGTCATCCAGTGGAGATTTCGGCCACATTGC
CAGGCCAGCTGAAGTTTGTGCATGTCATATATCGCCACGGCGACAGAACG
CCCGTGGATCCCTATCCCACGGACCCCTGGGGCGACAGGAAGTTCTGGCC
CACCGGCTGGGGAGATTTGACCAATTTGGGCAAGCAAGAGCACTACGACC
TGGGAAAATGGCTGCGGAATCGCTATTCAAACCTCCTACCGCCTATATAC
TCCAACGAGAACATCTACGTTCAGTCCACCGACGTGGATCGCACATTGAT
GAGTGCCCAGTCGAATCTGGCTGGTCTCTACGAGCCGCAAGGGGAAGACA
TCTGGAACACGGACATCAACTGGCAACCCATACCCATTCACACCTCGCCC
GAGAGGGAGGATCCCATACTGGCCGCTAAGGCACCTTGTCCTGCCTATGA
CTATGAGCTGGCCAGCCTGGAATCATCGCCAGAATTCAAGGCCTTGACCG
AAAAACACCGAAATCTGTTTGCTTATTTGAGCGAAAAAGGCGGACGCCCC
GTGAAGACCTTCATTGATGCCCAGTATTTGAATAACACCTTGTTCATTGA
GAATCTGTACAACATGACACTGCCAAAATGGACTAAAATGGTTTATGGGA
GAGAGGAGCTCACGTATGTATCGAATTTCGCTTTCGCCATCAGCTCTTAT
ACGCGAAAGCTGGCGAGACTGAAGGCGGGGCCTTTGCTAAAGGACATATT
CCAGCGGTTTAAAGAGAAATCCTCCGGGAGCCTAAAACCAGATCGTTCGA
TGTGGGTCTACAGTGCTCATGACACCACGGTAGCCAGCGTTTTGAATGCG
CTGAAATTATTTGAGCTGCACAGTCCTCCCTACACGGCGTGCATAATGAT
GGAGTTGCGTGTGGATGAGACCAACACCCCGTTGGTCTCTATTTTCTACA
AGAACACCACAGCTGAACCCCTGCCTCTGGACATACCTGGTTGTGGGCCT
TCCTGTCCGCTGACCAAACTTATGAACATCTACGAGGACGTTTTGCCCGT
AGATTGGGAGCGCGAGTGCAAGCTATCCACGATGATGATGACTTATGAGG
AAGCCAATCTTGGAACTGCGACGGGCATTCTCATTTTAATCGTAATTGCG
CTGCTGTTCGCCAGCTATGGCCTCATGATCTACTACCGACGTCGCAACTA
CAAGCTGTATTCCTCGTACTCTCAAATGGCTTAGAAGCTTTCTAGACCAT

BS15806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RB 1368 CG7899-PB 1..1368 17..1384 6840 100 Plus
Acph-1-RA 1317 CG7899-PA 1..1317 68..1384 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-RB 1889 CG7899-RB 82..1449 17..1384 6840 100 Plus
Acph-1-RA 1944 CG7899-RA 149..1504 29..1384 6780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29992083..29992772 1015..326 3450 100 Minus
3R 32079331 3R 29991753..29992014 1275..1014 1310 100 Minus
3R 32079331 3R 29992986..29993195 226..17 1050 100 Minus
3R 32079331 3R 29991584..29991694 1384..1274 555 100 Minus
3R 32079331 3R 29992829..29992927 325..227 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:47:44 has no hits.

BS15806.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:57 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 1..1368 17..1384 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:03 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 76..1456 8..1390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:59 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 89..1449 24..1384 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:57 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 76..1456 8..1390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:49 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
Acph-1-RB 89..1449 24..1384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:49 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29991584..29991693 1275..1384 100 <- Minus
3R 29991754..29992012 1016..1274 100 <- Minus
3R 29992083..29992772 326..1015 100 <- Minus
3R 29992829..29992927 227..325 100 <- Minus
3R 29992986..29993188 24..226 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:59 Download gff for BS15806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25817306..25817415 1275..1384 100 <- Minus
arm_3R 25817476..25817734 1016..1274 100 <- Minus
arm_3R 25817805..25818494 326..1015 100 <- Minus
arm_3R 25818551..25818649 227..325 100 <- Minus
arm_3R 25818708..25818910 24..226 100   Minus

BS15806.pep Sequence

Translation from 16 to 1383

> BS15806.pep
MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANA
EGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGD
LTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSN
LAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELAS
LESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNM
TLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKE
KSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVD
ETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERE
CKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSS
YSQMA*

BS15806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Acph-1-PB 455 CG7899-PB 1..455 1..455 2436 100 Plus
Acph-1-PA 438 CG7899-PA 1..438 18..455 2353 100 Plus
CG9449-PK 391 CG9449-PK 36..370 65..396 658 38.4 Plus
CG9449-PH 404 CG9449-PH 49..383 65..396 658 38.4 Plus
CG9449-PG 404 CG9449-PG 49..383 65..396 658 38.4 Plus