Clone Sequence Records
BS15822.3prime Sequence
856 bp (845 high quality bases) assembled on 2007-04-16
> BS15822.3prime
ATGGTCTAGAAAGCTTTCAATCTCCCCCCTTTACGGCCTGCGGAATGGGC
ACATCGTAGAGCAAGTACATTAGGCAGTTGCCAATGTGGCCCAAAAACTG
CTGGTAGTTGGTAACCCGATGCTGGAACTCCTGCCACAGCGGCAGGACAG
ACCGCTCCTCGGTATCAGGCTGTTCTATCGTGATGCCCTGCTCCAGCATC
GTTTTGTTGGTGTATGTGAACAGATACGAAGCTGGCTTCTGGCCAATGGT
GGTGACCAAGTGGGTGATGTTGCTCTCCAGACCGATGCTCTTGCCGGCTG
TCAGGAAATAGGCCTCCGGATCCCGCTCGTTCCGGTACCGAACATTTCCC
TCAAGAATGGTCAGCGTGCAGTTGATAAGGTCCGGCGAGATGAAGTTGGT
CAGAGTTAGTCCCGGGAAATCCGCCACGAAAATGACATCGGAGTAGTTGT
TCCAGGCCAGCACCTCAGTCTCAATGGTGCGCAATTTGGGCCGCATGTGG
TTCAGCTCGTTCAGCAGAGGCAGCGACCAGGAGGTGCTCTCAAAGGGCGA
CCACTTGGCCCGGAGGAGATCCTCGCGTGGATCGAATGATCGTTGCTGAA
AGCGTCCGTTCATGGAGCACCAGATGTCGAAGTAGATGGAAATGTTCCTC
CCAATATGTGGCTGTTTCTCTTGTAAATTCTCCTCGATGCACCTGGCATA
CTGCACTGCCATGTCGGCGTACTTCGTCCAGCGGTCGTACTCCGTAAAGG
CGTATGGATTCAGGTTGTGCACTTGGCGGCTCTCGTTGTCCACCACCTGA
ATGGAGGTCTGCAGCGTGTCGTAGGAGTGCACCATCATGTCCCATGAGTA
GCCGTA
BS15822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13927-PA | 2019 | GC-RA | 1180..2019 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-RB | 2382 | CG13927-RB | 1209..2049 | 856..16 | 4205 | 100 | Minus |
| GC-RA | 2673 | CG13927-RA | 1500..2340 | 856..16 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1623512..1624352 | 16..856 | 4205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:12:06 has no hits.
BS15822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:18 Download gff for
BS15822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13927-PA | 1181..2019 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:23 Download gff for
BS15822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 1501..2340 | 16..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:52:10 Download gff for
BS15822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 1501..2340 | 16..855 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:52:10 Download gff for
BS15822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1623512..1624351 | 16..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:23 Download gff for
BS15822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1623512..1624351 | 16..855 | 100 | | Plus |
BS15822.5prime Sequence
830 bp (807 high quality bases) assembled on 2007-04-17
> BS15822.5prime
GAAGTTATCAGTCGACATGGCCAACTCCAAGCGAAAGCTGCCCACGAAAC
CCAGTGCCACAGAGGACGCTACTCCGCACAAAGATACACCTAGGTCGTCG
GAAGAATTCCCCACAGATGTAAATCACAAGAGTGCCAAGAAGTCCTTCCT
TCCTCAAAACGCATTCTTTCGAGATTGCCTCGGTCACGATCTGAGCAACT
TCACTAGCCTGACCAACTTTACCAGCTGGCTAAACAGACCCGTAGATGGA
GCTGCCCTGGGCATCTTCCGTCTGCTCTACGGAGCAGCCATGCTGATTGA
CATCGCAGAGGAGCGAGGTGGCGGCCAGCTGGACGTGCGGTTTCAGGAGC
CGCTACACTGCCACTTTCCACTGTTCAACGGGATGCGAGCATTGGACTAT
CCACTGATGGGCTGCGTCTATCTGTGCATGTGGCTGGGCGCGTGGGGCAT
CATGCTGGGCTATCGATTCAGGACTAGCTGCCTGGCCTTCCTGATACCCT
ACTGGTACATCTTCCTGCTGGACAAACCGACGTGGAATAACCACAGCTAT
CTATTCGGCCTGGTGGGAACATTGCTGCTCTTCACCCAAGCGGAGTCCTA
CTGCTCCCTGGACAGATGGCTAAATCCCCGAAAGAGTCACTGTATTCCCT
ACTGGAACTACTTCCTAATCAAATTCCAGTTCTTCATCCTGTACATGTAC
GCAGGTCTGAAGAAATTCTCGCTGGAATGGCTATCGGGATACGCGATGTC
CAATCTGAGTTACCACTGGGTCTTTGCCCCGTTCCGGCAAGTGATTGATC
CGGAGCTGATAGACCTGCTCATCGTGCATT
BS15822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13927-PA | 2019 | GC-RA | 1..814 | 17..830 | 4070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-RB | 2382 | CG13927-RB | 30..843 | 17..830 | 4070 | 100 | Plus |
| GC-RA | 2673 | CG13927-RA | 321..1134 | 17..830 | 4070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1625075..1625661 | 603..17 | 2935 | 100 | Minus |
| 3L | 28110227 | 3L | 1624790..1625017 | 830..603 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:27:11 has no hits.
BS15822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:19 Download gff for
BS15822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13927-PA | 1..814 | 17..830 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:06 Download gff for
BS15822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 308..1134 | 2..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:46:58 Download gff for
BS15822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 308..1134 | 2..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:46:58 Download gff for
BS15822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1624790..1625016 | 604..830 | 100 | <- | Minus |
| 3L | 1625075..1625674 | 2..603 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:06 Download gff for
BS15822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1624790..1625016 | 604..830 | 100 | <- | Minus |
| arm_3L | 1625075..1625674 | 2..603 | 99 | | Minus |
BS15822.complete Sequence
2051 bp assembled on 2010-05-13
GenBank Submission: KX805401
> BS15822.complete
GAAGTTATCAGTCGACATGGCCAACTCCAAGCGAAAGCTGCCCACGAAAC
CCAGTGCCACAGAGGACGCTACTCCGCACAAAGATACACCTAGGTCGTCG
GAAGAATTCCCCACAGATGTAAATCACAAGAGTGCCAAGAAGTCCTTCCT
TCCTCAAAACGCATTCTTTCGAGATTGCCTCGGTCACGATCTGAGCAACT
TCACTAGCCTGACCAACTTTACCAGCTGGCTAAACAGACCCGTAGATGGA
GCTGCCCTGGGCATCTTCCGTCTGCTCTACGGAGCAGCCATGCTGATTGA
CATCGCAGAGGAGCGAGGTGGCGGCCAGCTGGACGTGCGGTTTCAGGAGC
CGCTACACTGCCACTTTCCACTGTTCAACGGGATGCGAGCATTGGACTAT
CCACTGATGGGCTGCGTCTATCTGTGCATGTGGCTGGGCGCGTGGGGCAT
CATGCTGGGCTATCGATTCAGGACTAGCTGCCTGGCCTTCCTGATACCCT
ACTGGTACATCTTCCTGCTGGACAAACCGACGTGGAATAACCACAGCTAT
CTATTCGGCCTGGTGGGAACATTGCTGCTCTTCACCCAAGCGGAGTCCTA
CTGCTCCCTGGACAGATGGCTAAATCCCCGAAAGAGTCACTGTATTCCCT
ACTGGAACTACTTCCTAATCAAATTCCAGTTCTTCATCCTGTACATGTAC
GCAGGTCTGAAGAAATTCTCGCTGGAATGGCTATCGGGATACGCGATGTC
CAATCTGAGTTACCACTGGGTCTTTGCCCCGTTCCGGCAAGTGATTGATC
CGGAGCTGATAGACCTGCTCATCGTGCATTGGTTCACCGCCTTCTTCGAC
GTGTCCATTGCTTTTTTCATGACTCTGGAAAAGACGCGCCTACTGGTCAC
TCCTTTCATGCTCAGTTTTCATCTAATGAACTCCCGACTGTTTGTAATAG
GCATGTTTCCCTGGGTGTGTCTGGCCGAAGTGCCGCTCTTCTTCAGCTTC
GACTGGCCGAGGAGGCTAGGCAACTGGTCCAAAATACAGGACGTCCATCC
AAAAGATCCAGAGGAAGAGCTTTCCAAGCCGGGAATCCTGGCCAGACTGC
GCACGGGCCTCATCCTTGCCTACTGTGGACTGCAACTCTTCCTGCCATAC
TCACACTTCATCACCAAGGGCTATAACAACTGGACGAATGGGCTGTACGG
CTACTCATGGGACATGATGGTGCACTCCTACGACACGCTGCAGACCTCCA
TTCAGGTGGTGGACAACGAGAGCCGCCAAGTGCACAACCTGAATCCATAC
GCCTTTACGGAGTACGACCGCTGGACGAAGTACGCCGACATGGCAGTGCA
GTATGCCAGGTGCATCGAGGAGAATTTACAAGAGAAACAGCCACATATTG
GGAGGAACATTTCCATCTACTTCGACATCTGGTGCTCCATGAACGGACGC
TTTCAGCAACGATCATTCGATCCACGCGAGGATCTCCTCCGGGCCAAGTG
GTCGCCCTTTGAGAGCACCTCCTGGTCGCTGCCTCTGCTGAACGAGCTGA
ACCACATGCGGCCCAAATTGCGCACCATTGAGACTGAGGTGCTGGCCTGG
AACAACTACTCCGATGTCATTTTCGTGGCGGATTTCCCGGGACTAACTCT
GACCAACTTCATCTCGCCGGACCTTATCAACTGCACGCTGACCATTCTTG
AGGGAAATGTTCGGTACCGGAACGAGCGGGATCCGGAGGCCTATTTCCTG
ACAGCCGGCAAGAGCATCGGTCTGGAGAGCAACATCACCCACTTGGTCAC
CACCATTGGCCAGAAGCCAGCTTCGTATCTGTTCACATACACCAACAAAA
CGATGCTGGAGCAGGGCATCACGATAGAACAGCCTGATACCGAGGAGCGG
TCTGTCCTGCCGCTGTGGCAGGAGTTCCAGCATCGGGTTACCAACTACCA
GCAGTTTTTGGGCCACATTGGCAACTGCCTAATGTACTTGCTCTACGATG
TGCCCATTCCGCAGGCCGTAAAGGGGGGAGATTGAAAGCTTTCTAGACCA
T
BS15822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-RB | 2019 | CG13927-PB | 1..2019 | 17..2035 | 10095 | 100 | Plus |
| GC-RA | 2019 | CG13927-PA | 1..2019 | 17..2035 | 10095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-RB | 2382 | CG13927-RB | 30..2049 | 17..2036 | 10100 | 100 | Plus |
| GC-RA | 2673 | CG13927-RA | 321..2340 | 17..2036 | 10100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1623512..1624599 | 2036..949 | 5440 | 100 | Minus |
| 3L | 28110227 | 3L | 1625075..1625661 | 603..17 | 2935 | 100 | Minus |
| 3L | 28110227 | 3L | 1624669..1625017 | 951..603 | 1745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:16:16 has no hits.
BS15822.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 13:55:50 Download gff for
BS15822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 318..2335 | 17..2034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:13 Download gff for
BS15822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 321..2338 | 17..2034 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:33 Download gff for
BS15822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GC-RA | 321..2338 | 17..2034 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:33 Download gff for
BS15822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1623514..1624597 | 951..2034 | 100 | <- | Minus |
| 3L | 1624670..1625016 | 604..950 | 100 | <- | Minus |
| 3L | 1625075..1625661 | 17..603 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:13 Download gff for
BS15822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1623514..1624597 | 951..2034 | 100 | <- | Minus |
| arm_3L | 1624670..1625016 | 604..950 | 100 | <- | Minus |
| arm_3L | 1625075..1625661 | 17..603 | 100 | | Minus |
BS15822.pep Sequence
Translation from 16 to 2034
> BS15822.pep
MANSKRKLPTKPSATEDATPHKDTPRSSEEFPTDVNHKSAKKSFLPQNAF
FRDCLGHDLSNFTSLTNFTSWLNRPVDGAALGIFRLLYGAAMLIDIAEER
GGGQLDVRFQEPLHCHFPLFNGMRALDYPLMGCVYLCMWLGAWGIMLGYR
FRTSCLAFLIPYWYIFLLDKPTWNNHSYLFGLVGTLLLFTQAESYCSLDR
WLNPRKSHCIPYWNYFLIKFQFFILYMYAGLKKFSLEWLSGYAMSNLSYH
WVFAPFRQVIDPELIDLLIVHWFTAFFDVSIAFFMTLEKTRLLVTPFMLS
FHLMNSRLFVIGMFPWVCLAEVPLFFSFDWPRRLGNWSKIQDVHPKDPEE
ELSKPGILARLRTGLILAYCGLQLFLPYSHFITKGYNNWTNGLYGYSWDM
MVHSYDTLQTSIQVVDNESRQVHNLNPYAFTEYDRWTKYADMAVQYARCI
EENLQEKQPHIGRNISIYFDIWCSMNGRFQQRSFDPREDLLRAKWSPFES
TSWSLPLLNELNHMRPKLRTIETEVLAWNNYSDVIFVADFPGLTLTNFIS
PDLINCTLTILEGNVRYRNERDPEAYFLTAGKSIGLESNITHLVTTIGQK
PASYLFTYTNKTMLEQGITIEQPDTEERSVLPLWQEFQHRVTNYQQFLGH
IGNCLMYLLYDVPIPQAVKGGD*
BS15822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GC-PB | 672 | CG13927-PB | 1..672 | 1..672 | 3666 | 100 | Plus |
| GC-PA | 672 | CG13927-PA | 1..672 | 1..672 | 3666 | 100 | Plus |
