Clone Sequence Records
BS15823.complete Sequence
512 bp assembled on 2010-02-09
GenBank Submission: KX805521
> BS15823.complete
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCTGAAAGC
TTTCTAGACCAT
BS15823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 480 | CG11314-PB | 1..480 | 17..496 | 2400 | 100 | Plus |
Npc2g-RA | 480 | CG11314-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Npc2h-RC | 474 | CG11315-PC | 48..472 | 70..494 | 880 | 80.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 592 | CG11314-RB | 30..510 | 16..496 | 2405 | 100 | Plus |
Npc2g-RA | 659 | CG11314-RA | 30..510 | 16..496 | 2405 | 100 | Plus |
Npc2h-RC | 597 | CG11315-RC | 78..502 | 70..494 | 880 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30744754..30745234 | 496..16 | 2405 | 100 | Minus |
3R | 32079331 | 3R | 30745789..30746213 | 494..70 | 880 | 80.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:54:50 has no hits.
BS15823.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:47 Download gff for
BS15823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-RA | 34..507 | 22..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:30 Download gff for
BS15823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 36..509 | 22..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:19 Download gff for
BS15823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-RA | 34..507 | 22..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:14 Download gff for
BS15823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 36..509 | 22..495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:14 Download gff for
BS15823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30744755..30745228 | 22..495 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:30 Download gff for
BS15823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26570477..26570950 | 22..495 | 100 | | Minus |
BS15823.3prime Sequence
510 bp (510 high quality bases) assembled on 2007-04-16
> BS15823.3prime
ATGGTCTAGAAAGCTTTCACCGCACCACCTTAATGTCGATGGTGAAGCAG
CAGCGCTTCTGGGAGACGGGATCCTTCAGAGCCCAACGGATGGTGTACGG
ACTCAGGGGAAACTTGGCCTCGATGGGCACCAGGGTGGTGTAGGTCTGTT
TCACTCCGGATCTCACGGGGCAGGGTGTGTACTTGCAGGCGGCGCTGTCC
AAGGTGAGCAGGGGCAGCTCCACATTCTCGCTCTTGGCCCAGCCCAAGCT
GGCTACCAGGGTGTCGGCATCGAAGTTCGGCGTGAAGTCGAAGCTCATCT
CACTGTTGTGCTTCCGGCGGATATTGCAAGCCGCATTGTTGAGGGCCTCC
GGACATGGCGAGACTCTCACCTGCTGGATCGTACAGGTGTCTACGCTATC
CGGACATGGTTCGAAGTTGACCACCTCGGCGGAAGCGGATGACGAGATCA
GGACGATGGCGATGGCGACAGCCTGCAGCGAGCTAGGACGCAACATGTCG
ACTGATAACT
BS15823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11314-PA | 480 | CG11314-RA | 1..476 | 496..21 | 2380 | 100 | Minus |
CG11315-PA | 474 | CG11315-RA | 192..284 | 299..207 | 315 | 93.5 | Minus |
CG11315-PB | 393 | CG11315-RB | 192..284 | 299..207 | 315 | 93.5 | Minus |
CG11315-PA | 474 | CG11315-RA | 385..470 | 106..21 | 255 | 91.8 | Minus |
CG11315-PB | 393 | CG11315-RB | 313..389 | 97..21 | 235 | 92.2 | Minus |
CG11315-PA | 474 | CG11315-RA | 301..338 | 190..153 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 592 | CG11314-RB | 30..510 | 497..17 | 2390 | 99.8 | Minus |
Npc2g-RA | 659 | CG11314-RA | 30..510 | 497..17 | 2390 | 99.8 | Minus |
Npc2h-RC | 597 | CG11315-RC | 78..500 | 443..21 | 870 | 81.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30744754..30745234 | 17..497 | 2390 | 99.8 | Plus |
3R | 32079331 | 3R | 30745791..30746213 | 21..443 | 870 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:07:57 has no hits.
BS15823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:19 Download gff for
BS15823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-PA | 1..480 | 17..496 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:07 Download gff for
BS15823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..510 | 17..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:31 Download gff for
BS15823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..510 | 17..501 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:31 Download gff for
BS15823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30744754..30745239 | 17..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:07 Download gff for
BS15823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26570476..26570961 | 17..501 | 99 | | Plus |
BS15823.5prime Sequence
510 bp (510 high quality bases) assembled on 2007-04-17
> BS15823.5prime
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCTGAAAGC
TTTCTAGACC
BS15823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11314-PA | 480 | CG11314-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
CG11315-PA | 474 | CG11315-RA | 192..284 | 214..306 | 315 | 93.5 | Plus |
CG11315-PB | 393 | CG11315-RB | 192..284 | 214..306 | 315 | 93.5 | Plus |
CG11315-PA | 474 | CG11315-RA | 385..472 | 407..494 | 265 | 92 | Plus |
CG11315-PB | 393 | CG11315-RB | 313..391 | 416..494 | 245 | 92.4 | Plus |
CG11315-PA | 474 | CG11315-RA | 301..338 | 323..360 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-RB | 592 | CG11314-RB | 30..510 | 16..496 | 2405 | 100 | Plus |
Npc2g-RA | 659 | CG11314-RA | 30..510 | 16..496 | 2405 | 100 | Plus |
Npc2h-RC | 597 | CG11315-RC | 78..502 | 70..494 | 880 | 81.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30744754..30745234 | 496..16 | 2405 | 100 | Minus |
3R | 32079331 | 3R | 30745789..30746213 | 494..70 | 880 | 80.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:48:32 has no hits.
BS15823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:19 Download gff for
BS15823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11314-PA | 1..480 | 17..496 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:09 Download gff for
BS15823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..513 | 12..503 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:38:04 Download gff for
BS15823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2g-RA | 25..513 | 12..503 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:38:04 Download gff for
BS15823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30744751..30745239 | 12..503 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:09 Download gff for
BS15823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26570473..26570961 | 12..503 | 98 | | Minus |
BS15823.pep Sequence
Translation from 16 to 495
> BS15823.pep
MLRPSSLQAVAIAIVLISSSASAEVVNFEPCPDSVDTCTIQQVRVSPCPE
ALNNAACNIRRKHNSEMSFDFTPNFDADTLVASLGWAKSENVELPLLTLD
SAACKYTPCPVRSGVKQTYTTLVPIEAKFPLSPYTIRWALKDPVSQKRCC
FTIDIKVVR*
BS15823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2g-PB | 159 | CG11314-PB | 1..159 | 1..159 | 829 | 100 | Plus |
Npc2g-PA | 159 | CG11314-PA | 1..159 | 1..159 | 829 | 100 | Plus |
Npc2h-PC | 157 | CG11315-PC | 1..157 | 1..159 | 643 | 78 | Plus |
Npc2h-PA | 157 | CG11315-PA | 1..157 | 1..159 | 643 | 78 | Plus |
Npc2h-PB | 130 | CG11315-PB | 1..130 | 1..159 | 497 | 65.4 | Plus |