Clone BS15823 Report

Search the DGRC for BS15823

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2g-RA
Protein status:BS15823.pep: full length peptide match
Sequenced Size:512

Clone Sequence Records

BS15823.complete Sequence

512 bp assembled on 2010-02-09

GenBank Submission: KX805521

> BS15823.complete
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCTGAAAGC
TTTCTAGACCAT

BS15823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 480 CG11314-PB 1..480 17..496 2400 100 Plus
Npc2g-RA 480 CG11314-PA 1..480 17..496 2400 100 Plus
Npc2h-RC 474 CG11315-PC 48..472 70..494 880 80.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..510 16..496 2405 100 Plus
Npc2g-RA 659 CG11314-RA 30..510 16..496 2405 100 Plus
Npc2h-RC 597 CG11315-RC 78..502 70..494 880 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744754..30745234 496..16 2405 100 Minus
3R 32079331 3R 30745789..30746213 494..70 880 80.5 Minus
Blast to na_te.dros performed on 2014-11-27 12:54:50 has no hits.

BS15823.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:47 Download gff for BS15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG11314-RA 34..507 22..495 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:30 Download gff for BS15823.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 36..509 22..495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:19 Download gff for BS15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG11314-RA 34..507 22..495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:14 Download gff for BS15823.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 36..509 22..495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:14 Download gff for BS15823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30744755..30745228 22..495 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:30 Download gff for BS15823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570477..26570950 22..495 100   Minus

BS15823.3prime Sequence

510 bp (510 high quality bases) assembled on 2007-04-16

> BS15823.3prime
ATGGTCTAGAAAGCTTTCACCGCACCACCTTAATGTCGATGGTGAAGCAG
CAGCGCTTCTGGGAGACGGGATCCTTCAGAGCCCAACGGATGGTGTACGG
ACTCAGGGGAAACTTGGCCTCGATGGGCACCAGGGTGGTGTAGGTCTGTT
TCACTCCGGATCTCACGGGGCAGGGTGTGTACTTGCAGGCGGCGCTGTCC
AAGGTGAGCAGGGGCAGCTCCACATTCTCGCTCTTGGCCCAGCCCAAGCT
GGCTACCAGGGTGTCGGCATCGAAGTTCGGCGTGAAGTCGAAGCTCATCT
CACTGTTGTGCTTCCGGCGGATATTGCAAGCCGCATTGTTGAGGGCCTCC
GGACATGGCGAGACTCTCACCTGCTGGATCGTACAGGTGTCTACGCTATC
CGGACATGGTTCGAAGTTGACCACCTCGGCGGAAGCGGATGACGAGATCA
GGACGATGGCGATGGCGACAGCCTGCAGCGAGCTAGGACGCAACATGTCG
ACTGATAACT

BS15823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11314-PA 480 CG11314-RA 1..476 496..21 2380 100 Minus
CG11315-PA 474 CG11315-RA 192..284 299..207 315 93.5 Minus
CG11315-PB 393 CG11315-RB 192..284 299..207 315 93.5 Minus
CG11315-PA 474 CG11315-RA 385..470 106..21 255 91.8 Minus
CG11315-PB 393 CG11315-RB 313..389 97..21 235 92.2 Minus
CG11315-PA 474 CG11315-RA 301..338 190..153 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..510 497..17 2390 99.8 Minus
Npc2g-RA 659 CG11314-RA 30..510 497..17 2390 99.8 Minus
Npc2h-RC 597 CG11315-RC 78..500 443..21 870 81.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744754..30745234 17..497 2390 99.8 Plus
3R 32079331 3R 30745791..30746213 21..443 870 80.4 Plus
Blast to na_te.dros performed on 2015-02-11 19:07:57 has no hits.

BS15823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:19 Download gff for BS15823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-PA 1..480 17..496 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:07 Download gff for BS15823.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..510 17..501 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:01:31 Download gff for BS15823.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..510 17..501 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:01:31 Download gff for BS15823.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30744754..30745239 17..501 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:07 Download gff for BS15823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570476..26570961 17..501 99   Plus

BS15823.5prime Sequence

510 bp (510 high quality bases) assembled on 2007-04-17

> BS15823.5prime
GAAGTTATCAGTCGACATGTTGCGTCCTAGCTCGCTGCAGGCTGTCGCCA
TCGCCATCGTCCTGATCTCGTCATCCGCTTCCGCCGAGGTGGTCAACTTC
GAACCATGTCCGGATAGCGTAGACACCTGTACGATCCAGCAGGTGAGAGT
CTCGCCATGTCCGGAGGCCCTCAACAATGCGGCTTGCAATATCCGCCGGA
AGCACAACAGTGAGATGAGCTTCGACTTCACGCCGAACTTCGATGCCGAC
ACCCTGGTAGCCAGCTTGGGCTGGGCCAAGAGCGAGAATGTGGAGCTGCC
CCTGCTCACCTTGGACAGCGCCGCCTGCAAGTACACACCCTGCCCCGTGA
GATCCGGAGTGAAACAGACCTACACCACCCTGGTGCCCATCGAGGCCAAG
TTTCCCCTGAGTCCGTACACCATCCGTTGGGCTCTGAAGGATCCCGTCTC
CCAGAAGCGCTGCTGCTTCACCATCGACATTAAGGTGGTGCGCTGAAAGC
TTTCTAGACC

BS15823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11314-PA 480 CG11314-RA 1..480 17..496 2400 100 Plus
CG11315-PA 474 CG11315-RA 192..284 214..306 315 93.5 Plus
CG11315-PB 393 CG11315-RB 192..284 214..306 315 93.5 Plus
CG11315-PA 474 CG11315-RA 385..472 407..494 265 92 Plus
CG11315-PB 393 CG11315-RB 313..391 416..494 245 92.4 Plus
CG11315-PA 474 CG11315-RA 301..338 323..360 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-RB 592 CG11314-RB 30..510 16..496 2405 100 Plus
Npc2g-RA 659 CG11314-RA 30..510 16..496 2405 100 Plus
Npc2h-RC 597 CG11315-RC 78..502 70..494 880 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30744754..30745234 496..16 2405 100 Minus
3R 32079331 3R 30745789..30746213 494..70 880 80.5 Minus
Blast to na_te.dros performed on 2015-02-13 07:48:32 has no hits.

BS15823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:19 Download gff for BS15823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11314-PA 1..480 17..496 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:09 Download gff for BS15823.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..513 12..503 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:38:04 Download gff for BS15823.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2g-RA 25..513 12..503 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:38:04 Download gff for BS15823.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30744751..30745239 12..503 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:09 Download gff for BS15823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26570473..26570961 12..503 98   Minus

BS15823.pep Sequence

Translation from 16 to 495

> BS15823.pep
MLRPSSLQAVAIAIVLISSSASAEVVNFEPCPDSVDTCTIQQVRVSPCPE
ALNNAACNIRRKHNSEMSFDFTPNFDADTLVASLGWAKSENVELPLLTLD
SAACKYTPCPVRSGVKQTYTTLVPIEAKFPLSPYTIRWALKDPVSQKRCC
FTIDIKVVR*

BS15823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2g-PB 159 CG11314-PB 1..159 1..159 829 100 Plus
Npc2g-PA 159 CG11314-PA 1..159 1..159 829 100 Plus
Npc2h-PC 157 CG11315-PC 1..157 1..159 643 78 Plus
Npc2h-PA 157 CG11315-PA 1..157 1..159 643 78 Plus
Npc2h-PB 130 CG11315-PB 1..130 1..159 497 65.4 Plus