Clone BS15827 Report

Search the DGRC for BS15827

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG2663-RA
Protein status:BS15827.pep: gold
Sequenced Size:16

Clone Sequence Records

BS15827.3prime Sequence

948 bp (854 high quality bases) assembled on 2007-04-16

> BS15827.3prime
ATGGTCTAGAAAGCTTCTAGTCGATGTTCAGCTGCCGGAAGGTGCCCTCC
ATGCCGAAGAGGTCATCGCTGGTCTTGGGAGCGCCGGGGCGAAGGGACTC
GTTCGCCTTCTTGTCCTCCTGGTCCTTGAACCACTGGGTGTTGTCGACCA
GCTTCTGCTTCCACCACTGGTTCAGCTCGACGACGCCGCCGGCCTTGCCG
CCGTACTCGTTGGGCAGGAGGTCACGGGGCACCACCTTGTAGAGACTCTC
CACGTCGTTGTGGAAGGTTATGCGGCTGCGGATCTTCTCCTTCACGAACG
GCTTCACAAAGTTGAAGATAGTGTCCACCAGCGGCGAGATGTTGATCACA
TGCACCTCCTTCACCTTCACGGGATAGGCCTCTTGCACGGCGATCAGGAA
CTTCTTCACCACGGTGGGCGAGAACTTGGCGAAGTGGGCGGCGCTGGCCA
CCGACGCGTCCAGGATGAAGATGTCGCCGGCGATGCCGACGCTCTCCTCC
GCCAGGCGCACGTCCCCGATCATCAGGGCCACCTTCATGGCGTCCAGGAT
GTGGTGGGGCTGGAAGTCGCAATCGATACCCCGGATGAACGTGATGCGGC
GTCCATTGGGCGTAATCCCCGGGAGAGTCGGGCAGTGCACATAGTCCAGT
ACGATGTTTAGTTCCTCCCGATTGATGTCCCGGTTGGAGAAGAACTCTGG
CACCGCGTTGCGCATGGTGTAGTACATGTCCAGCTTTTTCTTCACCTTCT
CCAGGCTGAACTTGCAGCCGCGCAGGAAGGTCGTGAGGCGCATGTCGTCC
ATGTCCTTGGGCAGGTGCGGCTGTGTCTCCAGCCACTCGCGAATCAGCTT
GATGTCGCGCTCAATGTCTGCGGGGTCCTCCGGCTCACGCAGCTCCTCGC
GGATGCTCACGCGCTGGTCGGGTGTGGGGTGTAGCATCATCATCGCAA

BS15827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-PB 948 CG2663-RB 17..948 948..17 4660 100 Minus
CG2663-PA 927 CG2663-RA 1..927 943..17 4635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-RC 1645 CG2663-RC 486..1417 948..17 4660 100 Minus
CG2663-RA 1287 CG2663-RA 132..1059 944..17 4640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5400822..5401443 17..638 3110 100 Plus
3R 32079331 3R 5401506..5401812 638..944 1535 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:52:22 has no hits.

BS15827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:21 Download gff for BS15827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-PB 19..948 17..946 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:42:42 Download gff for BS15827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 482..1413 13..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:27 Download gff for BS15827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RC 488..1419 13..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:27 Download gff for BS15827.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5400820..5401443 13..638 99 <- Plus
3R 5401507..5401812 639..946 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:42:42 Download gff for BS15827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1226542..1227165 13..638 99 <- Plus
arm_3R 1227229..1227534 639..946 99   Plus

BS15827.5prime Sequence

868 bp (765 high quality bases) assembled on 2007-04-17

> BS15827.5prime
GAAGTTATCAGTCGACATGAGTGCACATACAGTTGCGATGATGATGCTAC
ACCCCACACCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCG
GAGGACCCCGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCT
GGAGACACAGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGA
CCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTG
GACATGTACTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCG
GGACATCAATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCC
CGACTCTCCCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGG
GGTATCGATTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGT
GGCCCTGATGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCG
CCGGCGACATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTC
GCCAAGTTCTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGA
GGCCTATCCCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGC
TGGTGGACACTATCTTCAACTTTGTGAAGCCGTTCGTGAAGGAGAAGATC
CGCAGCCGCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGT
GCCCCGTGACCTCCTGCCCCACGAGTACGGCGGCAAGGCCGGCGGCGTCG
TCGAGCTGAACCAGTGGTGGAAGCAGAAGCTGGTCGACAACACCCAGTGG
TTCAAGGACCAGCAGGAC

BS15827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-PB 948 CG2663-RB 1..852 17..868 4210 99.7 Plus
CG2663-PA 927 CG2663-RA 1..831 38..868 4105 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-RC 1645 CG2663-RC 469..1321 16..868 4235 99.8 Plus
CG2663-RA 1287 CG2663-RA 132..963 37..868 4130 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5400918..5401443 868..343 2600 99.6 Minus
3R 32079331 3R 5401506..5401812 343..37 1535 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:45:45 has no hits.

BS15827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:22 Download gff for BS15827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-PB 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:42:13 Download gff for BS15827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 453..1315 5..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:58 Download gff for BS15827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2663-RC 459..1321 5..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:58 Download gff for BS15827.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5400918..5401443 343..868 99 <- Minus
3R 5401507..5401811 38..342 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:42:13 Download gff for BS15827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1226640..1227165 343..868 99 <- Minus
arm_3R 1227229..1227533 38..342 100 <- Minus

BS15827.complete Sequence

980 bp assembled on 2007-05-07

GenBank Submission: FJ637971

> BS15827.complete
GAAGTTATCAGTCGACATGAGTGCACATACAGTTGCGATGATGATGCTAC
ACCCCACACCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCG
GAGGACCCCGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCT
GGAGACACAGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGA
CCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTG
GACATGTACTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCG
GGACATCAATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCC
CGACTCTCCCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGG
GGTATCGATTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGT
GGCCCTGATGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCG
CCGGCGACATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTC
GCCAAGTTCTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGA
GGCCTATCCCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGC
TGGTGGACACTATCTTCAACTTTGTGAAGCCGTTCGTGAAGGAGAAGATC
CGCAGCCGCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGT
GCCCCGTGACCTCCTGCCCAACGAGTACGGCGGCAAGGCCGGCGGCGTCG
TCGAGCTGAACCAGTGGTGGAAGCAGAAGCTGGTCGACAACACCCAGTGG
TTCAAGGACCAGGAGGACAAGAAGGCGAACGAGTCCCTTCGCCCCGGCGC
TCCCAAGACCAGCGATGACCTCTTCGGCATGGAGGGCACCTTCCGGCAGC
TGAACATCGACTAGAAGCTTTCTAGACCAT

BS15827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-RC 927 CG2663-PC 1..927 38..964 4635 100 Plus
CG2663-RA 927 CG2663-PA 1..927 38..964 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-RC 1645 CG2663-RC 469..1417 16..964 4745 100 Plus
CG2663-RA 1287 CG2663-RA 132..1059 37..964 4640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5400822..5401443 964..343 3110 100 Minus
3R 32079331 3R 5401506..5401812 343..37 1535 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:13:18 has no hits.

BS15827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:58 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 1..948 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:05 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 453..1413 5..968 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:08 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 464..1411 17..964 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:59 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RB 453..1413 5..968 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:02 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
CG2663-RC 470..1417 17..964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:02 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5400822..5401443 343..964 100 <- Minus
3R 5401507..5401811 38..342 100 <- Minus
3R 5403516..5403536 17..37 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:08 Download gff for BS15827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1226544..1227165 343..964 100 <- Minus
arm_3R 1227229..1227533 38..342 100 <- Minus
arm_3R 1229238..1229258 17..37 100   Minus

BS15827.pep Sequence

Translation from 16 to 963

> BS15827.pep
MSAHTVAMMMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPH
LPKDMDDMRLTTFLRGCKFSLEKVKKKLDMYYTMRNAVPEFFSNRDINRE
ELNIVLDYVHCPTLPGITPNGRRITFIRGIDCDFQPHHILDAMKVALMIG
DVRLAEESVGIAGDIFILDASVASAAHFAKFSPTVVKKFLIAVQEAYPVK
VKEVHVINISPLVDTIFNFVKPFVKEKIRSRITFHNDVESLYKVVPRDLL
PNEYGGKAGGVVELNQWWKQKLVDNTQWFKDQEDKKANESLRPGAPKTSD
DLFGMEGTFRQLNID*

BS15827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2663-PC 308 CG2663-PC 1..308 8..315 1618 100 Plus
CG2663-PA 308 CG2663-PA 1..308 8..315 1618 100 Plus
CG12926-PA 313 CG12926-PA 26..313 29..315 510 37.4 Plus
CG33966-PA 310 CG33966-PA 8..310 14..315 505 35.1 Plus
CG33514-PA 311 CG33514-PA 9..311 14..315 496 35.2 Plus