Clone Sequence Records
BS15827.3prime Sequence
948 bp (854 high quality bases) assembled on 2007-04-16
> BS15827.3prime
ATGGTCTAGAAAGCTTCTAGTCGATGTTCAGCTGCCGGAAGGTGCCCTCC
ATGCCGAAGAGGTCATCGCTGGTCTTGGGAGCGCCGGGGCGAAGGGACTC
GTTCGCCTTCTTGTCCTCCTGGTCCTTGAACCACTGGGTGTTGTCGACCA
GCTTCTGCTTCCACCACTGGTTCAGCTCGACGACGCCGCCGGCCTTGCCG
CCGTACTCGTTGGGCAGGAGGTCACGGGGCACCACCTTGTAGAGACTCTC
CACGTCGTTGTGGAAGGTTATGCGGCTGCGGATCTTCTCCTTCACGAACG
GCTTCACAAAGTTGAAGATAGTGTCCACCAGCGGCGAGATGTTGATCACA
TGCACCTCCTTCACCTTCACGGGATAGGCCTCTTGCACGGCGATCAGGAA
CTTCTTCACCACGGTGGGCGAGAACTTGGCGAAGTGGGCGGCGCTGGCCA
CCGACGCGTCCAGGATGAAGATGTCGCCGGCGATGCCGACGCTCTCCTCC
GCCAGGCGCACGTCCCCGATCATCAGGGCCACCTTCATGGCGTCCAGGAT
GTGGTGGGGCTGGAAGTCGCAATCGATACCCCGGATGAACGTGATGCGGC
GTCCATTGGGCGTAATCCCCGGGAGAGTCGGGCAGTGCACATAGTCCAGT
ACGATGTTTAGTTCCTCCCGATTGATGTCCCGGTTGGAGAAGAACTCTGG
CACCGCGTTGCGCATGGTGTAGTACATGTCCAGCTTTTTCTTCACCTTCT
CCAGGCTGAACTTGCAGCCGCGCAGGAAGGTCGTGAGGCGCATGTCGTCC
ATGTCCTTGGGCAGGTGCGGCTGTGTCTCCAGCCACTCGCGAATCAGCTT
GATGTCGCGCTCAATGTCTGCGGGGTCCTCCGGCTCACGCAGCTCCTCGC
GGATGCTCACGCGCTGGTCGGGTGTGGGGTGTAGCATCATCATCGCAA
BS15827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-PB | 948 | CG2663-RB | 17..948 | 948..17 | 4660 | 100 | Minus |
CG2663-PA | 927 | CG2663-RA | 1..927 | 943..17 | 4635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-RC | 1645 | CG2663-RC | 486..1417 | 948..17 | 4660 | 100 | Minus |
CG2663-RA | 1287 | CG2663-RA | 132..1059 | 944..17 | 4640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5400822..5401443 | 17..638 | 3110 | 100 | Plus |
3R | 32079331 | 3R | 5401506..5401812 | 638..944 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:52:22 has no hits.
BS15827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:21 Download gff for
BS15827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-PB | 19..948 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:42:42 Download gff for
BS15827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 482..1413 | 13..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:31:27 Download gff for
BS15827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RC | 488..1419 | 13..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:31:27 Download gff for
BS15827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5400820..5401443 | 13..638 | 99 | <- | Plus |
3R | 5401507..5401812 | 639..946 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:42:42 Download gff for
BS15827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1226542..1227165 | 13..638 | 99 | <- | Plus |
arm_3R | 1227229..1227534 | 639..946 | 99 | | Plus |
BS15827.5prime Sequence
868 bp (765 high quality bases) assembled on 2007-04-17
> BS15827.5prime
GAAGTTATCAGTCGACATGAGTGCACATACAGTTGCGATGATGATGCTAC
ACCCCACACCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCG
GAGGACCCCGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCT
GGAGACACAGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGA
CCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTG
GACATGTACTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCG
GGACATCAATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCC
CGACTCTCCCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGG
GGTATCGATTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGT
GGCCCTGATGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCG
CCGGCGACATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTC
GCCAAGTTCTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGA
GGCCTATCCCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGC
TGGTGGACACTATCTTCAACTTTGTGAAGCCGTTCGTGAAGGAGAAGATC
CGCAGCCGCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGT
GCCCCGTGACCTCCTGCCCCACGAGTACGGCGGCAAGGCCGGCGGCGTCG
TCGAGCTGAACCAGTGGTGGAAGCAGAAGCTGGTCGACAACACCCAGTGG
TTCAAGGACCAGCAGGAC
BS15827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-PB | 948 | CG2663-RB | 1..852 | 17..868 | 4210 | 99.7 | Plus |
CG2663-PA | 927 | CG2663-RA | 1..831 | 38..868 | 4105 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-RC | 1645 | CG2663-RC | 469..1321 | 16..868 | 4235 | 99.8 | Plus |
CG2663-RA | 1287 | CG2663-RA | 132..963 | 37..868 | 4130 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:45:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5400918..5401443 | 868..343 | 2600 | 99.6 | Minus |
3R | 32079331 | 3R | 5401506..5401812 | 343..37 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:45:45 has no hits.
BS15827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:22 Download gff for
BS15827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-PB | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:42:13 Download gff for
BS15827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 453..1315 | 5..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:15:58 Download gff for
BS15827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RC | 459..1321 | 5..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:15:58 Download gff for
BS15827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5400918..5401443 | 343..868 | 99 | <- | Minus |
3R | 5401507..5401811 | 38..342 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:42:13 Download gff for
BS15827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1226640..1227165 | 343..868 | 99 | <- | Minus |
arm_3R | 1227229..1227533 | 38..342 | 100 | <- | Minus |
BS15827.complete Sequence
980 bp assembled on 2007-05-07
GenBank Submission: FJ637971
> BS15827.complete
GAAGTTATCAGTCGACATGAGTGCACATACAGTTGCGATGATGATGCTAC
ACCCCACACCCGACCAGCGCGTGAGCATCCGCGAGGAGCTGCGTGAGCCG
GAGGACCCCGCAGACATTGAGCGCGACATCAAGCTGATTCGCGAGTGGCT
GGAGACACAGCCGCACCTGCCCAAGGACATGGACGACATGCGCCTCACGA
CCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGAAGGTGAAGAAAAAGCTG
GACATGTACTACACCATGCGCAACGCGGTGCCAGAGTTCTTCTCCAACCG
GGACATCAATCGGGAGGAACTAAACATCGTACTGGACTATGTGCACTGCC
CGACTCTCCCGGGGATTACGCCCAATGGACGCCGCATCACGTTCATCCGG
GGTATCGATTGCGACTTCCAGCCCCACCACATCCTGGACGCCATGAAGGT
GGCCCTGATGATCGGGGACGTGCGCCTGGCGGAGGAGAGCGTCGGCATCG
CCGGCGACATCTTCATCCTGGACGCGTCGGTGGCCAGCGCCGCCCACTTC
GCCAAGTTCTCGCCCACCGTGGTGAAGAAGTTCCTGATCGCCGTGCAAGA
GGCCTATCCCGTGAAGGTGAAGGAGGTGCATGTGATCAACATCTCGCCGC
TGGTGGACACTATCTTCAACTTTGTGAAGCCGTTCGTGAAGGAGAAGATC
CGCAGCCGCATAACCTTCCACAACGACGTGGAGAGTCTCTACAAGGTGGT
GCCCCGTGACCTCCTGCCCAACGAGTACGGCGGCAAGGCCGGCGGCGTCG
TCGAGCTGAACCAGTGGTGGAAGCAGAAGCTGGTCGACAACACCCAGTGG
TTCAAGGACCAGGAGGACAAGAAGGCGAACGAGTCCCTTCGCCCCGGCGC
TCCCAAGACCAGCGATGACCTCTTCGGCATGGAGGGCACCTTCCGGCAGC
TGAACATCGACTAGAAGCTTTCTAGACCAT
BS15827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-RC | 927 | CG2663-PC | 1..927 | 38..964 | 4635 | 100 | Plus |
CG2663-RA | 927 | CG2663-PA | 1..927 | 38..964 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-RC | 1645 | CG2663-RC | 469..1417 | 16..964 | 4745 | 100 | Plus |
CG2663-RA | 1287 | CG2663-RA | 132..1059 | 37..964 | 4640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5400822..5401443 | 964..343 | 3110 | 100 | Minus |
3R | 32079331 | 3R | 5401506..5401812 | 343..37 | 1535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:13:18 has no hits.
BS15827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:58 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:05 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 453..1413 | 5..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:08 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 464..1411 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:59 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RB | 453..1413 | 5..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:02 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2663-RC | 470..1417 | 17..964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:02 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5400822..5401443 | 343..964 | 100 | <- | Minus |
3R | 5401507..5401811 | 38..342 | 100 | <- | Minus |
3R | 5403516..5403536 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:08 Download gff for
BS15827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1226544..1227165 | 343..964 | 100 | <- | Minus |
arm_3R | 1227229..1227533 | 38..342 | 100 | <- | Minus |
arm_3R | 1229238..1229258 | 17..37 | 100 | | Minus |
BS15827.pep Sequence
Translation from 16 to 963
> BS15827.pep
MSAHTVAMMMLHPTPDQRVSIREELREPEDPADIERDIKLIREWLETQPH
LPKDMDDMRLTTFLRGCKFSLEKVKKKLDMYYTMRNAVPEFFSNRDINRE
ELNIVLDYVHCPTLPGITPNGRRITFIRGIDCDFQPHHILDAMKVALMIG
DVRLAEESVGIAGDIFILDASVASAAHFAKFSPTVVKKFLIAVQEAYPVK
VKEVHVINISPLVDTIFNFVKPFVKEKIRSRITFHNDVESLYKVVPRDLL
PNEYGGKAGGVVELNQWWKQKLVDNTQWFKDQEDKKANESLRPGAPKTSD
DLFGMEGTFRQLNID*
BS15827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2663-PC | 308 | CG2663-PC | 1..308 | 8..315 | 1618 | 100 | Plus |
CG2663-PA | 308 | CG2663-PA | 1..308 | 8..315 | 1618 | 100 | Plus |
CG12926-PA | 313 | CG12926-PA | 26..313 | 29..315 | 510 | 37.4 | Plus |
CG33966-PA | 310 | CG33966-PA | 8..310 | 14..315 | 505 | 35.1 | Plus |
CG33514-PA | 311 | CG33514-PA | 9..311 | 14..315 | 496 | 35.2 | Plus |