Clone Sequence Records
BS15831.3prime Sequence
921 bp (811 high quality bases) assembled on 2007-04-16
> BS15831.3prime
ATGGTCTAGAAAGCTTCTACTTGGCCTCGGTTCCGGCCAGCAGATACTCC
AAAGCGAAGAGCCGTATAATCAGTGCCAGGTTGTCCGTCGTCGCATAATC
GATCACGCTGGCGTTATCGTCGGGCGTATGCCATACACTGGGAAAGGGCA
CCGGAATGAGGTGCAAGATCGGCACATTTCGCCGCAGGAAGGGTATGTGA
TCGTCCTCGATGAAAGAGGATCGCATGGCCTGCGACTGGAAGTAGCGGGT
GGGGTCGCGCTGGGCAACTCCACTACTGGCATAGCGCTCCAGGAGCTGCA
ACTTGGCAAGACGTGTCTCCACGGACTGGATACGCATGTACCAGGACTCG
GTGTTTTCGAAGAAGCTGTAGAATGCCGGATCGGGGGCTCCCAACAGATC
CAGGAGCACCAGCATATCTATTCTATCAAGTTTTCCTTCATGGTGCCACT
TTTTGGCCAGGTGTCGTGCTCCATAGATGGAGTCCTTGGGTCCCCACTCC
TCAAAAGCCTCCTCGCCATCGAAGAACAAGAGCATCAAACTCAGTTTGCT
CTTCTTGAGGGGTTTCAACTGCTCCTGAAGCACCTGGGCCAGGTTGAGGA
GCATGGCACAGGGCACTGCCGAGTCGGTGGCCCCCAGGAATTCCACTCCA
GGCATGTATTTGCTATCATAATGGCAGGACAGCACCAGATATCTCTCAGC
ATTTGGATTCAGGGTGGCGATGATGTTGTGGAAATGCAATTTGCCTTTGA
TGGGAGCGTGATCATGAAAGCTGTTTACTTCCACATCCCAGTCTAGATCC
CTCAAACTCTGGACGATGTATTCTCGAACGATGCTATGATTTGTTGTGCC
CACAACTCGAGGTATAAAGATTTTGTCAAGGGCTTCCCTTAAGTGTAGCT
TATCGGATAGATTGCTGTACT
BS15831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5976-PB | 1065 | CG5976-RB | 161..1065 | 921..17 | 4400 | 99.4 | Minus |
CG5976-PA | 1059 | CG5976-RA | 155..1059 | 921..17 | 4400 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 580..1484 | 921..17 | 4450 | 99.4 | Minus |
isoQC-RB | 1617 | CG5976-RB | 222..1126 | 921..17 | 4450 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475608..20476512 | 921..17 | 4450 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:10:51 has no hits.
BS15831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:24 Download gff for
BS15831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-PA | 155..1059 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:11 Download gff for
BS15831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 222..1126 | 17..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:43 Download gff for
BS15831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 222..1126 | 17..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:43 Download gff for
BS15831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475608..20476512 | 17..921 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:11 Download gff for
BS15831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468708..20469612 | 17..921 | 99 | | Minus |
BS15831.5prime Sequence
864 bp (738 high quality bases) assembled on 2007-05-07
> BS15831.5prime
GAAGTTATCAGTCGACATGCGTCTGCTACTCAGAAATTATTCCCTAATGG
AGGCCGTCAAAAGATTGCTGCCGAGACCGCGCAAAAAAATCTACAATCTA
GGCGCTTGCTTCGAACTGGTGGATATTCCTAAGATATCCTACAATCCCAG
CGAGCTCTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGC
TACACCTAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGC
ACAACAAATCATAGCATCGTTCGAGAATACATCGTCCAGAGTTTGAGGGA
TCTAGACTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCA
AAGGCAAATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCT
GAGAGATATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGG
AGTGGAATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCC
TCAACCTGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGC
AAACTGAGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGA
GTGGGGACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGT
GGCACCATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGAT
CTGTTGGGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGA
GTCCTGGTACATGCGTATCCAGTCCGTGGAGACACGTCTTGGCAAGTTGC
AGCTCCTGAAGCGCTATGCCAGTAGTGGAGTTGCCCAGCGCGACCCCACC
CGCTACTTCCAGTC
BS15831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5976-PB | 1065 | CG5976-RB | 1..848 | 17..864 | 4140 | 99.5 | Plus |
CG5976-PA | 1059 | CG5976-RA | 110..842 | 132..864 | 3565 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RB | 1617 | CG5976-RB | 62..909 | 17..864 | 4180 | 99.5 | Plus |
isoQC-RA | 1975 | CG5976-RA | 535..1267 | 132..864 | 3605 | 99.5 | Plus |
CG5969-RA | 947 | CG5969-RA | 683..799 | 17..133 | 585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475563..20476295 | 132..864 | 3605 | 99.5 | Plus |
3L | 28110227 | 3L | 20474527..20474643 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:27:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1868..1905 | 124..87 | 109 | 76.3 | Minus |
BS15831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:24 Download gff for
BS15831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-PB | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:10 Download gff for
BS15831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 53..909 | 7..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:48:45 Download gff for
BS15831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 53..909 | 7..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:48:45 Download gff for
BS15831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20474518..20474643 | 7..133 | 97 | -> | Plus |
3L | 20475565..20476295 | 134..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:10 Download gff for
BS15831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20467618..20467743 | 7..133 | 97 | -> | Plus |
arm_3L | 20468665..20469395 | 134..864 | 99 | | Plus |
BS15831.complete Sequence
1097 bp assembled on 2007-05-07
GenBank Submission: FJ637972
> BS15831.complete
GAAGTTATCAGTCGACATGCGTCTGCTACTCAGAAATTATTCCCTAATGG
AGGCCGTCAAAAGATTGCTGCCGAGACCGCGCAAAAAAATCTACAATCTA
GGCGCTTGCTTCGAACTGGTGGATATTCCTAAGATATCCTACAATCCCAG
CGAGCTCTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGC
TACACCTAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGC
ACAACAAATCATAGCATCGTTCGAGAATACATCGTCCAGAGTTTGAGGGA
TCTAGACTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCA
AAGGCAAATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCT
GAGAGATATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGG
AGTGGAATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCC
TCAACCTGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGC
AAACTGAGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGA
GTGGGGACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGT
GGCACCATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGAT
CTGTTGGGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGA
GTCCTGGTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGC
AGCTCCTGGAGCGCTATGCCAGTAGTGGAGTTGCCCAGCGCGACCCCACC
CGCTACTTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCA
CATACCCTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGC
CCTTTCCCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGAT
TATGCGACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGA
GTATCTGCTGGCCGGAACCGAGGCCAAGTAGAAGCTTTCTAGACCAT
BS15831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:31:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RB | 1065 | CG5976-PB | 1..1065 | 17..1081 | 5295 | 99.8 | Plus |
isoQC-RA | 1059 | CG5976-PA | 110..1059 | 132..1081 | 4720 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:31:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RB | 1617 | CG5976-RB | 62..1126 | 17..1081 | 5295 | 99.8 | Plus |
isoQC-RA | 1975 | CG5976-RA | 535..1484 | 132..1081 | 4720 | 99.8 | Plus |
CG5969-RA | 947 | CG5969-RA | 683..799 | 17..133 | 585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475563..20476512 | 132..1081 | 4720 | 99.8 | Plus |
3L | 28110227 | 3L | 20474527..20474643 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:31:17 has no hits.
BS15831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:00 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RB | 1..1065 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:07 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RB | 53..1126 | 7..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:10 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 62..1126 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:00 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RB | 53..1126 | 7..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:21 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 62..1126 | 17..1081 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:21 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20474527..20474643 | 17..133 | 100 | -> | Plus |
3L | 20475565..20476512 | 134..1081 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:10 Download gff for
BS15831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20467627..20467743 | 17..133 | 100 | -> | Plus |
arm_3L | 20468665..20469612 | 134..1081 | 99 | | Plus |
BS15831.pep Sequence
Translation from 16 to 1080
> BS15831.pep
MRLLLRNYSLMEAVKRLLPRPRKKIYNLGACFELVDIPKISYNPSELSEP
RFLEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDV
EVNSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLG
ATDSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKD
SIYGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMR
IQSVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLR
RNVPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAG
TEAK*
BS15831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-PB | 354 | CG5976-PB | 1..354 | 1..354 | 1846 | 100 | Plus |
isoQC-PA | 352 | CG5976-PA | 32..352 | 34..354 | 1651 | 98.8 | Plus |
CG6168-PC | 342 | CG6168-PC | 39..331 | 40..347 | 686 | 43.5 | Plus |
CG6168-PB | 342 | CG6168-PB | 39..331 | 40..347 | 686 | 43.5 | Plus |
QC-PA | 340 | CG32412-PA | 37..326 | 60..347 | 646 | 43.5 | Plus |