Clone Sequence Records
BS15835.complete Sequence
1985 bp assembled on 2009-12-07
GenBank Submission: KX803686
> BS15835.complete
GAAGTTATCAGTCGACATGCACGCGGAGCTGTATCGCACTCGCAAGCGGT
GGTATGAGTCCGCTTGGCCTGGAGCAGGATTCTGGCGAGGAGCCAACGAC
ACGCTGCCCGTGACGAACTACATCACGTATCCGGCGAATTTCGATCAGCC
GGATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGGGCAATG
TGAAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTGGACCGA
GAATGCAATGTCATCTACGACGGGATGGTGGTCTACGGAGCCACAGCCCT
GTGGGTGGCTGCCGGAATGGGGCATCTGCAGATAGTCAAAATGCTCGTCC
AAGCGGGAGCGGCCATCAATCACAATACCAAGGCGCAGTCGTCGCCGCTG
AGAGCGGCCTGCTATGAGGGTCGATTGGACATCGTTGAATTCCTAATTGA
CAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACACGCTTA
TGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTACTTCAG
AATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGCCTTGCA
CTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGCTTGACC
ATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCCTTGCAG
GCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTCATCGAACGACC
AGAACTGATGAGCTTGGAGGAGCAGATCACAGCATTGGAGCTTCTGGGAG
CCACTTATGCGAATGACAAAATCAAATACGACGTGAATAAGGCCTATGGC
TATCTGCTGAGAGCCATGCAGCTACGTTACAGCAATCCACGCGGTGTGAT
CCGCAAAAGAGTTCAGCCCACTGTGCCCGCGTATGACAATTGGCTTGAGA
CTGAAAATCTGCCCGAATTGTATGCCATCAAACTTAATCACCACTCCATC
CACATGGAGTCGCTGGCCATAAGGGAACGCATTCTGGGCCGCAATAATCC
GGAGTTGCCTCAGGCAATTATCTATCGAGGAGCTGTGATGGCGGATCAGG
GCAGGTTTTACCAGTGCCAGGTGCTTTGGAACTACGCCATAGATCTGCGA
ATGCGCAATAATGTATCGGTAGATCGCGATCTCTTACGGTTCGCCCAGCT
TTTTGCTCAGATTTTGCGGGTGGAGAACCACAATCTTACGTTGGATCACG
TTCTGCCAGTTTTGGCCAAGTGTCAGCAGGAGATCGAGAACAATAAGTTT
AAAATTAAGGAAGCCAAGCCCAACGCTTGCCCCAGTCTATGGCAGGATCA
GAATAATCAGAACTGCATTACTGCACTCTATCTAATCAAGATCGTTACCC
ATTTGGCGCGACGCAAGAAGGATCAAAACATTGACGAGGAGCACATCCAG
CAGCTATTCCTGGTCGTACGCAAGTTCATACAGAACGACACTCGCCTGCA
GGATGGACAGACATTGCTGCATATCGCCGTCAATGGAGTGATGCCCGTAG
ACGAGTTCTACACAAATGAGATGTGCAGATTTCCCTGCTATGCCACTGCT
TTGGTTCTGGTACACTGTGGCGCCTCCGTGGTTGCAGTGGACTCGGATCG
GAACACCCCTCTACACATCCTAGTGACCAAGGTGAACACCACTCAGGATC
GCCAGGCCGAAATGGCTCGCATTCTGGAGCTGTTCGTCGAGGCAGGAGCC
CATTTGGATGCAGTGAACGCGGCAGGGCAGACAGCGGCCACGGCCTGCAA
GCTGCCTATCTTGGCCAATCGGCTGCACGCCCATCAGAATGCCCACACCA
GCCTCAAGTGCCTGGCCGCACGCTCAATTGCCACCAACAGGCTAAACTTC
AAGGGTCTGATACCCACGCAACTGGAGGCCTTCATACAGATGCACAGCGT
GCGCAAGGTGCTGCCGTAGAAGCTTTCTAGACCAT
BS15835.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fem-1-RB | 1953 | CG9025-PB | 1..1953 | 17..1969 | 9765 | 100 | Plus |
Fem-1-RA | 2109 | CG9025-PA | 277..2109 | 137..1969 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fem-1-RB | 2486 | CG9025-RB | 75..2029 | 16..1970 | 9775 | 100 | Plus |
Fem-1-RA | 2679 | CG9025-RA | 389..2222 | 137..1970 | 9170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20663932..20664678 | 1165..419 | 3735 | 100 | Minus |
2R | 25286936 | 2R | 20663453..20663868 | 1578..1163 | 2080 | 100 | Minus |
2R | 25286936 | 2R | 20664784..20665069 | 421..136 | 1430 | 100 | Minus |
2R | 25286936 | 2R | 20663160..20663389 | 1805..1576 | 1150 | 100 | Minus |
2R | 25286936 | 2R | 20662931..20663095 | 1970..1806 | 825 | 100 | Minus |
2R | 25286936 | 2R | 20665364..20665464 | 136..36 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:45:06 has no hits.
BS15835.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:35 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 1..1953 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:01 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 75..2027 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:42 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 76..2028 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:59 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 75..2027 | 17..1969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:00 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 76..2028 | 17..1969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:00 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20662932..20663095 | 1806..1969 | 100 | <- | Minus |
2R | 20663160..20663386 | 1579..1805 | 100 | <- | Minus |
2R | 20663453..20663868 | 1163..1578 | 100 | <- | Minus |
2R | 20663935..20664677 | 420..1162 | 100 | <- | Minus |
2R | 20664786..20665068 | 137..419 | 100 | <- | Minus |
2R | 20665364..20665463 | 37..136 | 100 | <- | Minus |
2R | 20665545..20665564 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:42 Download gff for
BS15835.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16550437..16550600 | 1806..1969 | 100 | <- | Minus |
arm_2R | 16550665..16550891 | 1579..1805 | 100 | <- | Minus |
arm_2R | 16550958..16551373 | 1163..1578 | 100 | <- | Minus |
arm_2R | 16551440..16552182 | 420..1162 | 100 | <- | Minus |
arm_2R | 16552291..16552573 | 137..419 | 100 | <- | Minus |
arm_2R | 16552869..16552968 | 37..136 | 100 | <- | Minus |
arm_2R | 16553050..16553069 | 17..36 | 100 | | Minus |
BS15835.3prime Sequence
945 bp (800 high quality bases) assembled on 2007-04-16
> BS15835.3prime
ATGGTCTAGAAAGCTTCTACGGCAGCACCTTGCGCACGCTGTGCATCTGT
ATGAAGGCCTCCAGTTGCGTGGGTATCAGACCCTTGAAGTTTAGCCTGTT
GGTGGCAATTGAGCGTGCGGCCAGGCACTTGAGGCTGGTGTGGGCATTCT
GATGGGCGTGCAGCCGATTGGCCAAGATAGGCAGCTTGCAGGCCGTGGCC
GCTGTCTGCCCTGCCGCGTTCACTGCATCCAAATGGGCTCCTGCCTCGAC
GAACAGCTCCAGAATGCGAGCCATTTCGGCCTGGCGATCCTGAGTGGTGT
TCACCTTGGTCACTAGGATGTGTAGAGGGGTGTTCCGATCCGAGTCCACT
GCAACCACGGAGGCGCCACAGTGTACCAGAACCAAAGCAGTGGCATAGCA
GGGAAATCTGCACATCTCATTTGTGTAGAACTCGTCTACGGGCATCACTC
CATTGACGGCGATATGCAGCAATGTCTGTCCATCCTGCAGGCGAGTGTCG
TTCTGTATGAACTTGCGTACGACCAGGAATAGCTGCTGGATGTGCTCCTC
GTCAATGTTTTGATCCTTCTTGCGTCGCGCCAAATGGGTAACGATCTTGA
TTAGATAGAGTGCAGTAATGCAGTTCTGATTATTCTGATCCTGCCATAGA
CTGGGGCAAGCGTTGGGCTTGGCTTCCTTAATTTTAAACTTATTGTTCTC
GATCTCCTGCTGACACTTGGCCAAAACTGGCAGAACGTGATCCAACGTAA
GATTGTGGTTCTCCACCCGCAAAATCTGAGCAAAAAGCTGGGCGAACCGT
AAGAGATCGCGATCTACCGATACATTATTGCGCATTCGCAGATCTATGGC
GTAGTTCCAAAGCACCTGGCACTGGTAAAAACCTGCCCTGATCCGCCATC
ACAGCTCCTCGAAAGATAATTGCCTGAGGCAACTCCGGATTATTG
BS15835.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9025-PA | 2109 | CG9025-RA | 1182..2109 | 945..17 | 4580 | 99.7 | Minus |
CG9025-PB | 1953 | CG9025-RB | 1026..1953 | 945..17 | 4580 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fem-1-RB | 2486 | CG9025-RB | 1101..2029 | 945..16 | 4610 | 99.8 | Minus |
Fem-1-RA | 2679 | CG9025-RA | 1294..2222 | 945..16 | 4610 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20663453..20663868 | 408..823 | 2080 | 100 | Plus |
2R | 25286936 | 2R | 20663160..20663389 | 181..410 | 1150 | 100 | Plus |
2R | 25286936 | 2R | 20662931..20663095 | 16..180 | 825 | 100 | Plus |
2R | 25286936 | 2R | 20663932..20664055 | 821..945 | 560 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:01:33 has no hits.
BS15835.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:26 Download gff for
BS15835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9025-PB | 1026..1953 | 17..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:00 Download gff for
BS15835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RA | 1294..2222 | 16..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:03 Download gff for
BS15835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RA | 1294..2222 | 16..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:03 Download gff for
BS15835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20663453..20663868 | 408..823 | 100 | <- | Plus |
2R | 20662931..20663095 | 16..180 | 100 | <- | Plus |
2R | 20663160..20663386 | 181..407 | 100 | <- | Plus |
2R | 20663935..20664055 | 824..945 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:00 Download gff for
BS15835.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16550436..16550600 | 16..180 | 100 | <- | Plus |
arm_2R | 16550665..16550891 | 181..407 | 100 | <- | Plus |
arm_2R | 16550958..16551373 | 408..823 | 100 | <- | Plus |
arm_2R | 16551440..16551560 | 824..945 | 98 | | Plus |
BS15835.5prime Sequence
868 bp (767 high quality bases) assembled on 2007-04-16
> BS15835.5prime
GAAGTTATCACTCGACATGCACGCGGAGCTGTATCGCACTCGCAAGCGGT
GGTATGAGTCCGCTTGGCCTGGAGCAGGATTCTGGCGAGGAGCCAACGAC
ACGCTGCCCGTGACGAACTACATCACGTATCCGGCGAATTTCGATCAGCC
GGATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGGGCAATG
TGAAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTGGACCGA
GAATGCAATGTCATCTACGACGGGATGGTGGTCTACGGAGCCACAGCCCT
GTGGGTGGCTGCCGGAATGGGGCATCTGCAGATAGTCAAAATGCTCGTCC
AAGCGGGAGCGGCCATCAATCACAATACCAAGGCGCAGTCGTCGCCGCTG
AGAGCGGCCTGCTATGAGGGTCGATTGGACATCGTTGAATTCCTAATTGA
CAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACACGCTTA
TGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTACTTCAG
AATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGCCTTGCA
CTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGCTTGACC
ATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCCTTGCAG
GCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTCATCGAACGACC
AGAACTGATGAGCTTGGAGGAGCAGATCACAGCATTGGAGCTTCTGGGAG
CCACTTATGCGAATGACAAAATCAAATACGACGTGAATAAGGCCTATGGC
TATCTGCTGAGAGCCATG
BS15835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9025-PB | 1953 | CG9025-RB | 1..852 | 17..868 | 4260 | 100 | Plus |
CG9025-PA | 2109 | CG9025-RA | 277..1008 | 137..868 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fem-1-RB | 2486 | CG9025-RB | 75..927 | 16..868 | 4265 | 100 | Plus |
Fem-1-RA | 2679 | CG9025-RA | 389..1120 | 137..868 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20664229..20664678 | 868..419 | 2250 | 100 | Minus |
2R | 25286936 | 2R | 20664784..20665069 | 421..136 | 1430 | 100 | Minus |
2R | 25286936 | 2R | 20665364..20665464 | 136..36 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:11:15 has no hits.
BS15835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:26 Download gff for
BS15835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9025-PB | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:14 Download gff for
BS15835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 75..927 | 16..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:00 Download gff for
BS15835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fem-1-RB | 75..927 | 16..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:00 Download gff for
BS15835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20664229..20664677 | 420..868 | 100 | <- | Minus |
2R | 20664786..20665068 | 137..419 | 100 | <- | Minus |
2R | 20665364..20665463 | 37..136 | 100 | <- | Minus |
2R | 20665545..20665565 | 16..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:14 Download gff for
BS15835.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16551734..16552182 | 420..868 | 100 | <- | Minus |
arm_2R | 16552291..16552573 | 137..419 | 100 | <- | Minus |
arm_2R | 16552869..16552968 | 37..136 | 100 | <- | Minus |
arm_2R | 16553050..16553070 | 16..36 | 100 | | Minus |
BS15835.pep Sequence
Translation from 16 to 1968
> BS15835.pep
MHAELYRTRKRWYESAWPGAGFWRGANDTLPVTNYITYPANFDQPDGQSL
TPLTMAAMMGNVKFVKTLLSHYDVDLDRECNVIYDGMVVYGATALWVAAG
MGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIVEFLIDNGADV
NATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAES
GHLDVVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELMSL
EEQITALELLGATYANDKIKYDVNKAYGYLLRAMQLRYSNPRGVIRKRVQ
PTVPAYDNWLETENLPELYAIKLNHHSIHMESLAIRERILGRNNPELPQA
IIYRGAVMADQGRFYQCQVLWNYAIDLRMRNNVSVDRDLLRFAQLFAQIL
RVENHNLTLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQDQNNQNC
ITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTL
LHIAVNGVMPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLH
ILVTKVNTTQDRQAEMARILELFVEAGAHLDAVNAAGQTAATACKLPILA
NRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQMHSVRKVLP
*
BS15835.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fem-1-PB | 650 | CG9025-PB | 1..650 | 1..650 | 3381 | 100 | Plus |
Fem-1-PA | 702 | CG9025-PA | 93..702 | 41..650 | 3149 | 100 | Plus |
CG6966-PC | 664 | CG6966-PC | 43..664 | 51..643 | 701 | 32.1 | Plus |
CG6966-PB | 664 | CG6966-PB | 43..664 | 51..643 | 701 | 32.1 | Plus |
m-cup-PA | 702 | CG11896-PA | 105..700 | 52..643 | 383 | 23.9 | Plus |