Clone BS15835 Report

Search the DGRC for BS15835

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptFem-1-RB
Protein status:BS15835.pep: full length peptide match
Sequenced Size:1985

Clone Sequence Records

BS15835.complete Sequence

1985 bp assembled on 2009-12-07

GenBank Submission: KX803686

> BS15835.complete
GAAGTTATCAGTCGACATGCACGCGGAGCTGTATCGCACTCGCAAGCGGT
GGTATGAGTCCGCTTGGCCTGGAGCAGGATTCTGGCGAGGAGCCAACGAC
ACGCTGCCCGTGACGAACTACATCACGTATCCGGCGAATTTCGATCAGCC
GGATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGGGCAATG
TGAAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTGGACCGA
GAATGCAATGTCATCTACGACGGGATGGTGGTCTACGGAGCCACAGCCCT
GTGGGTGGCTGCCGGAATGGGGCATCTGCAGATAGTCAAAATGCTCGTCC
AAGCGGGAGCGGCCATCAATCACAATACCAAGGCGCAGTCGTCGCCGCTG
AGAGCGGCCTGCTATGAGGGTCGATTGGACATCGTTGAATTCCTAATTGA
CAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACACGCTTA
TGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTACTTCAG
AATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGCCTTGCA
CTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGCTTGACC
ATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCCTTGCAG
GCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTCATCGAACGACC
AGAACTGATGAGCTTGGAGGAGCAGATCACAGCATTGGAGCTTCTGGGAG
CCACTTATGCGAATGACAAAATCAAATACGACGTGAATAAGGCCTATGGC
TATCTGCTGAGAGCCATGCAGCTACGTTACAGCAATCCACGCGGTGTGAT
CCGCAAAAGAGTTCAGCCCACTGTGCCCGCGTATGACAATTGGCTTGAGA
CTGAAAATCTGCCCGAATTGTATGCCATCAAACTTAATCACCACTCCATC
CACATGGAGTCGCTGGCCATAAGGGAACGCATTCTGGGCCGCAATAATCC
GGAGTTGCCTCAGGCAATTATCTATCGAGGAGCTGTGATGGCGGATCAGG
GCAGGTTTTACCAGTGCCAGGTGCTTTGGAACTACGCCATAGATCTGCGA
ATGCGCAATAATGTATCGGTAGATCGCGATCTCTTACGGTTCGCCCAGCT
TTTTGCTCAGATTTTGCGGGTGGAGAACCACAATCTTACGTTGGATCACG
TTCTGCCAGTTTTGGCCAAGTGTCAGCAGGAGATCGAGAACAATAAGTTT
AAAATTAAGGAAGCCAAGCCCAACGCTTGCCCCAGTCTATGGCAGGATCA
GAATAATCAGAACTGCATTACTGCACTCTATCTAATCAAGATCGTTACCC
ATTTGGCGCGACGCAAGAAGGATCAAAACATTGACGAGGAGCACATCCAG
CAGCTATTCCTGGTCGTACGCAAGTTCATACAGAACGACACTCGCCTGCA
GGATGGACAGACATTGCTGCATATCGCCGTCAATGGAGTGATGCCCGTAG
ACGAGTTCTACACAAATGAGATGTGCAGATTTCCCTGCTATGCCACTGCT
TTGGTTCTGGTACACTGTGGCGCCTCCGTGGTTGCAGTGGACTCGGATCG
GAACACCCCTCTACACATCCTAGTGACCAAGGTGAACACCACTCAGGATC
GCCAGGCCGAAATGGCTCGCATTCTGGAGCTGTTCGTCGAGGCAGGAGCC
CATTTGGATGCAGTGAACGCGGCAGGGCAGACAGCGGCCACGGCCTGCAA
GCTGCCTATCTTGGCCAATCGGCTGCACGCCCATCAGAATGCCCACACCA
GCCTCAAGTGCCTGGCCGCACGCTCAATTGCCACCAACAGGCTAAACTTC
AAGGGTCTGATACCCACGCAACTGGAGGCCTTCATACAGATGCACAGCGT
GCGCAAGGTGCTGCCGTAGAAGCTTTCTAGACCAT

BS15835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Fem-1-RB 1953 CG9025-PB 1..1953 17..1969 9765 100 Plus
Fem-1-RA 2109 CG9025-PA 277..2109 137..1969 9165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Fem-1-RB 2486 CG9025-RB 75..2029 16..1970 9775 100 Plus
Fem-1-RA 2679 CG9025-RA 389..2222 137..1970 9170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20663932..20664678 1165..419 3735 100 Minus
2R 25286936 2R 20663453..20663868 1578..1163 2080 100 Minus
2R 25286936 2R 20664784..20665069 421..136 1430 100 Minus
2R 25286936 2R 20663160..20663389 1805..1576 1150 100 Minus
2R 25286936 2R 20662931..20663095 1970..1806 825 100 Minus
2R 25286936 2R 20665364..20665464 136..36 505 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:45:06 has no hits.

BS15835.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:35 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 1..1953 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:01 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 75..2027 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:42 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 76..2028 17..1969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:59 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 75..2027 17..1969 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:00 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 76..2028 17..1969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:00 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20662932..20663095 1806..1969 100 <- Minus
2R 20663160..20663386 1579..1805 100 <- Minus
2R 20663453..20663868 1163..1578 100 <- Minus
2R 20663935..20664677 420..1162 100 <- Minus
2R 20664786..20665068 137..419 100 <- Minus
2R 20665364..20665463 37..136 100 <- Minus
2R 20665545..20665564 17..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:42 Download gff for BS15835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16550437..16550600 1806..1969 100 <- Minus
arm_2R 16550665..16550891 1579..1805 100 <- Minus
arm_2R 16550958..16551373 1163..1578 100 <- Minus
arm_2R 16551440..16552182 420..1162 100 <- Minus
arm_2R 16552291..16552573 137..419 100 <- Minus
arm_2R 16552869..16552968 37..136 100 <- Minus
arm_2R 16553050..16553069 17..36 100   Minus

BS15835.3prime Sequence

945 bp (800 high quality bases) assembled on 2007-04-16

> BS15835.3prime
ATGGTCTAGAAAGCTTCTACGGCAGCACCTTGCGCACGCTGTGCATCTGT
ATGAAGGCCTCCAGTTGCGTGGGTATCAGACCCTTGAAGTTTAGCCTGTT
GGTGGCAATTGAGCGTGCGGCCAGGCACTTGAGGCTGGTGTGGGCATTCT
GATGGGCGTGCAGCCGATTGGCCAAGATAGGCAGCTTGCAGGCCGTGGCC
GCTGTCTGCCCTGCCGCGTTCACTGCATCCAAATGGGCTCCTGCCTCGAC
GAACAGCTCCAGAATGCGAGCCATTTCGGCCTGGCGATCCTGAGTGGTGT
TCACCTTGGTCACTAGGATGTGTAGAGGGGTGTTCCGATCCGAGTCCACT
GCAACCACGGAGGCGCCACAGTGTACCAGAACCAAAGCAGTGGCATAGCA
GGGAAATCTGCACATCTCATTTGTGTAGAACTCGTCTACGGGCATCACTC
CATTGACGGCGATATGCAGCAATGTCTGTCCATCCTGCAGGCGAGTGTCG
TTCTGTATGAACTTGCGTACGACCAGGAATAGCTGCTGGATGTGCTCCTC
GTCAATGTTTTGATCCTTCTTGCGTCGCGCCAAATGGGTAACGATCTTGA
TTAGATAGAGTGCAGTAATGCAGTTCTGATTATTCTGATCCTGCCATAGA
CTGGGGCAAGCGTTGGGCTTGGCTTCCTTAATTTTAAACTTATTGTTCTC
GATCTCCTGCTGACACTTGGCCAAAACTGGCAGAACGTGATCCAACGTAA
GATTGTGGTTCTCCACCCGCAAAATCTGAGCAAAAAGCTGGGCGAACCGT
AAGAGATCGCGATCTACCGATACATTATTGCGCATTCGCAGATCTATGGC
GTAGTTCCAAAGCACCTGGCACTGGTAAAAACCTGCCCTGATCCGCCATC
ACAGCTCCTCGAAAGATAATTGCCTGAGGCAACTCCGGATTATTG

BS15835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9025-PA 2109 CG9025-RA 1182..2109 945..17 4580 99.7 Minus
CG9025-PB 1953 CG9025-RB 1026..1953 945..17 4580 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Fem-1-RB 2486 CG9025-RB 1101..2029 945..16 4610 99.8 Minus
Fem-1-RA 2679 CG9025-RA 1294..2222 945..16 4610 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20663453..20663868 408..823 2080 100 Plus
2R 25286936 2R 20663160..20663389 181..410 1150 100 Plus
2R 25286936 2R 20662931..20663095 16..180 825 100 Plus
2R 25286936 2R 20663932..20664055 821..945 560 98.4 Plus
Blast to na_te.dros performed on 2015-02-13 16:01:33 has no hits.

BS15835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:26 Download gff for BS15835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9025-PB 1026..1953 17..945 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:00 Download gff for BS15835.3prime
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RA 1294..2222 16..945 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:38:03 Download gff for BS15835.3prime
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RA 1294..2222 16..945 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:38:03 Download gff for BS15835.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20663453..20663868 408..823 100 <- Plus
2R 20662931..20663095 16..180 100 <- Plus
2R 20663160..20663386 181..407 100 <- Plus
2R 20663935..20664055 824..945 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:00 Download gff for BS15835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16550436..16550600 16..180 100 <- Plus
arm_2R 16550665..16550891 181..407 100 <- Plus
arm_2R 16550958..16551373 408..823 100 <- Plus
arm_2R 16551440..16551560 824..945 98   Plus

BS15835.5prime Sequence

868 bp (767 high quality bases) assembled on 2007-04-16

> BS15835.5prime
GAAGTTATCACTCGACATGCACGCGGAGCTGTATCGCACTCGCAAGCGGT
GGTATGAGTCCGCTTGGCCTGGAGCAGGATTCTGGCGAGGAGCCAACGAC
ACGCTGCCCGTGACGAACTACATCACGTATCCGGCGAATTTCGATCAGCC
GGATGGACAATCGCTAACACCCCTGACCATGGCCGCGATGATGGGCAATG
TGAAATTCGTGAAGACTCTGCTGTCGCACTACGACGTCGACTTGGACCGA
GAATGCAATGTCATCTACGACGGGATGGTGGTCTACGGAGCCACAGCCCT
GTGGGTGGCTGCCGGAATGGGGCATCTGCAGATAGTCAAAATGCTCGTCC
AAGCGGGAGCGGCCATCAATCACAATACCAAGGCGCAGTCGTCGCCGCTG
AGAGCGGCCTGCTATGAGGGTCGATTGGACATCGTTGAATTCCTAATTGA
CAATGGCGCTGATGTGAATGCCACGAATTTGTTCAACAACAACACGCTTA
TGATTGCCGCCTACAAGGGTCACCACCTGGTGGTAAAGACTCTACTTCAG
AATGGATCAAGGGCCAATGATCAGGCGCTGTGCGGCGCCACTGCCTTGCA
CTATGCGGCCGAAAGCGGTCACCTGGATGTGGTGGTAGCCCTGCTTGACC
ATGGCGCCACTCTGAAGAAGAATGAGCTGGGAATTACGCCCGCCTTGCAG
GCTGCCGAACGTCTCCATGAGGATGTCCTTGAAGCGTTCATCGAACGACC
AGAACTGATGAGCTTGGAGGAGCAGATCACAGCATTGGAGCTTCTGGGAG
CCACTTATGCGAATGACAAAATCAAATACGACGTGAATAAGGCCTATGGC
TATCTGCTGAGAGCCATG

BS15835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9025-PB 1953 CG9025-RB 1..852 17..868 4260 100 Plus
CG9025-PA 2109 CG9025-RA 277..1008 137..868 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Fem-1-RB 2486 CG9025-RB 75..927 16..868 4265 100 Plus
Fem-1-RA 2679 CG9025-RA 389..1120 137..868 3660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20664229..20664678 868..419 2250 100 Minus
2R 25286936 2R 20664784..20665069 421..136 1430 100 Minus
2R 25286936 2R 20665364..20665464 136..36 505 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:11:15 has no hits.

BS15835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:26 Download gff for BS15835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9025-PB 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:14 Download gff for BS15835.5prime
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 75..927 16..868 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:00 Download gff for BS15835.5prime
Subject Subject Range Query Range Percent Splice Strand
Fem-1-RB 75..927 16..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:00 Download gff for BS15835.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20664229..20664677 420..868 100 <- Minus
2R 20664786..20665068 137..419 100 <- Minus
2R 20665364..20665463 37..136 100 <- Minus
2R 20665545..20665565 16..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:14 Download gff for BS15835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16551734..16552182 420..868 100 <- Minus
arm_2R 16552291..16552573 137..419 100 <- Minus
arm_2R 16552869..16552968 37..136 100 <- Minus
arm_2R 16553050..16553070 16..36 100   Minus

BS15835.pep Sequence

Translation from 16 to 1968

> BS15835.pep
MHAELYRTRKRWYESAWPGAGFWRGANDTLPVTNYITYPANFDQPDGQSL
TPLTMAAMMGNVKFVKTLLSHYDVDLDRECNVIYDGMVVYGATALWVAAG
MGHLQIVKMLVQAGAAINHNTKAQSSPLRAACYEGRLDIVEFLIDNGADV
NATNLFNNNTLMIAAYKGHHLVVKTLLQNGSRANDQALCGATALHYAAES
GHLDVVVALLDHGATLKKNELGITPALQAAERLHEDVLEAFIERPELMSL
EEQITALELLGATYANDKIKYDVNKAYGYLLRAMQLRYSNPRGVIRKRVQ
PTVPAYDNWLETENLPELYAIKLNHHSIHMESLAIRERILGRNNPELPQA
IIYRGAVMADQGRFYQCQVLWNYAIDLRMRNNVSVDRDLLRFAQLFAQIL
RVENHNLTLDHVLPVLAKCQQEIENNKFKIKEAKPNACPSLWQDQNNQNC
ITALYLIKIVTHLARRKKDQNIDEEHIQQLFLVVRKFIQNDTRLQDGQTL
LHIAVNGVMPVDEFYTNEMCRFPCYATALVLVHCGASVVAVDSDRNTPLH
ILVTKVNTTQDRQAEMARILELFVEAGAHLDAVNAAGQTAATACKLPILA
NRLHAHQNAHTSLKCLAARSIATNRLNFKGLIPTQLEAFIQMHSVRKVLP
*

BS15835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fem-1-PB 650 CG9025-PB 1..650 1..650 3381 100 Plus
Fem-1-PA 702 CG9025-PA 93..702 41..650 3149 100 Plus
CG6966-PC 664 CG6966-PC 43..664 51..643 701 32.1 Plus
CG6966-PB 664 CG6966-PB 43..664 51..643 701 32.1 Plus
m-cup-PA 702 CG11896-PA 105..700 52..643 383 23.9 Plus