Clone Sequence Records
BS15836.complete Sequence
626 bp assembled on 2010-02-09
GenBank Submission: KX802027
> BS15836.complete
GAAGTTATCAGTCGACATGGCCGCCTACGCTGCTTTCAAACACGTTGAGC
TTTACAATGTTGGCAAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGC
GGATCGAGCGACATCTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGT
GAAGAATCGCATGGCGTCCAACATATTCGCTGCCGAGAAAGATAATGGAG
TGAAAAACAACGGTGATGCACCACGTCGCGGCCAGAAGACCGTCGACTCC
CACTCTCGGCTGTTTGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAA
CCACATGAAGAGCAGCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCG
CCCAGAAGCTGCTGACCACCAATGGCCACTACAACGGCAAGAGCGGATCG
GTGTCCTCGGCCTCGTCTTCGGTGTCGTCCTCCACCGAGAACCTCAAGAT
GAACAGTGGCTCGAGATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGTAAAAGCTTTCTAGACCAT
BS15836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RC | 594 | CG31363-PC | 1..594 | 17..610 | 2970 | 100 | Plus |
| Jupiter-RD | 576 | CG31363-PD | 45..576 | 79..610 | 2660 | 100 | Plus |
| Jupiter-RA | 594 | CG31363-PA | 45..594 | 79..610 | 2445 | 96.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RC | 1581 | CG31363-RC | 206..799 | 17..610 | 2970 | 100 | Plus |
| Jupiter-RD | 1517 | CG31363-RD | 204..735 | 79..610 | 2660 | 100 | Plus |
| Jupiter-RA | 1535 | CG31363-RA | 204..753 | 79..610 | 2445 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11592367..11592625 | 470..212 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 11591168..11591310 | 610..468 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 11593631..11593768 | 214..77 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 11604141..11604203 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:09:57 has no hits.
BS15836.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:39 Download gff for
BS15836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 203..794 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:00 Download gff for
BS15836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 206..797 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:09 Download gff for
BS15836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 203..794 | 17..608 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:40:14 Download gff for
BS15836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 206..797 | 17..608 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:40:14 Download gff for
BS15836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11591170..11591307 | 471..608 | 100 | <- | Minus |
| 3R | 11592367..11592624 | 213..470 | 100 | <- | Minus |
| 3R | 11593633..11593766 | 79..212 | 100 | <- | Minus |
| 3R | 11604142..11604203 | 17..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:00 Download gff for
BS15836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7416892..7417029 | 471..608 | 100 | <- | Minus |
| arm_3R | 7418089..7418346 | 213..470 | 100 | <- | Minus |
| arm_3R | 7419355..7419488 | 79..212 | 100 | <- | Minus |
| arm_3R | 7429864..7429925 | 17..78 | 100 | | Minus |
BS15836.5prime Sequence
624 bp (624 high quality bases) assembled on 2007-04-17
> BS15836.5prime
GAAGTTATCAGTCGACATGGCCGCCTACGCTGCTTTCAAACACGTTGAGC
TTTACAATGTTGGCAAAGCAAAGAAGAGGGTGCTGAGGCCCCCGGGCGGC
GGATCGAGCGACATCTTTGGATCGGAGATGCCGCAGACCCCCAGGAACGT
GAAGAATCGCATGGCGTCCAACATATTCGCTGCCGAGAAAGATAATGGAG
TGAAAAACAACGGTGATGCACCACGTCGCGGCCAGAAGACCGTCGACTCC
CACTCTCGGCTGTTTGGGGAGCCCACCCGCCCGATCACCCCCGGCAAGAA
CCACATGAAGAGCAGCATTCCCTTTGGTCAGAACACAGAGGCCGTTGCCG
CCCAGAAGCTGCTGACCACCAATGGCCACTACAACGGCAAGAGCGGATCG
GTGTCCTCGGCCTCGTCTTCGGTGTCGTCCTCCACCGAGAACCTCAAGAT
GAACAGTGGCTCGAGATCAGAGGGCAACCCCGTCACAGGCGAGGGCTACA
AGGTCGTAGCCAACGAGTATTCCCAGCGCCAGGAGTCGTCCAATGGCGGC
ACTCCGGTGATCAACAAGAACCGCATTCCCCCAGGCGGCTACTCGTCGGG
CCTGTGGTAAAAGCTTTCTAGACC
BS15836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31363-PC | 594 | Jupiter-RC | 1..594 | 17..610 | 2970 | 100 | Plus |
| CG31363-PD | 576 | Jupiter-RD | 45..576 | 79..610 | 2660 | 100 | Plus |
| CG31363-PE | 627 | Jupiter-RE | 229..627 | 212..610 | 1995 | 100 | Plus |
| CG31363-PH | 609 | Jupiter-RH | 211..609 | 212..610 | 1995 | 100 | Plus |
| CG31363-PA | 594 | Jupiter-RA | 45..436 | 79..470 | 1960 | 100 | Plus |
| CG31363-PE | 627 | Jupiter-RE | 1..196 | 17..212 | 980 | 100 | Plus |
| CG31363-PB | 558 | Jupiter-RB | 417..558 | 469..610 | 710 | 100 | Plus |
| CG31363-PA | 594 | Jupiter-RA | 455..594 | 471..610 | 700 | 100 | Plus |
| CG31363-PH | 609 | Jupiter-RH | 45..178 | 79..212 | 670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RC | 1581 | CG31363-RC | 206..799 | 17..610 | 2970 | 100 | Plus |
| Jupiter-RD | 1517 | CG31363-RD | 204..735 | 79..610 | 2660 | 100 | Plus |
| Jupiter-RA | 1535 | CG31363-RA | 204..753 | 79..610 | 2470 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11592367..11592625 | 470..212 | 1295 | 100 | Minus |
| 3R | 32079331 | 3R | 11591168..11591310 | 610..468 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 11593631..11593768 | 214..77 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 11604141..11604203 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:11:25 has no hits.
BS15836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:27 Download gff for
BS15836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31363-PC | 1..594 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:17 Download gff for
BS15836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 201..799 | 9..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:18 Download gff for
BS15836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 201..799 | 9..610 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:18 Download gff for
BS15836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11591168..11591307 | 471..610 | 100 | <- | Minus |
| 3R | 11592367..11592624 | 213..470 | 100 | <- | Minus |
| 3R | 11593633..11593766 | 79..212 | 100 | <- | Minus |
| 3R | 11604142..11604208 | 9..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:17 Download gff for
BS15836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7416890..7417029 | 471..610 | 100 | <- | Minus |
| arm_3R | 7418089..7418346 | 213..470 | 100 | <- | Minus |
| arm_3R | 7419355..7419488 | 79..212 | 100 | <- | Minus |
| arm_3R | 7429864..7429930 | 9..78 | 94 | | Minus |
BS15836.3prime Sequence
624 bp (624 high quality bases) assembled on 2007-04-16
> BS15836.3prime
ATGGTCTAGAAAGCTTTTACCACAGGCCCGACGAGTAGCCGCCTGGGGGA
ATGCGGTTCTTGTTGATCACCGGAGTGCCGCCATTGGACGACTCCTGGCG
CTGGGAATACTCGTTGGCTACGACCTTGTAGCCCTCGCCTGTGACGGGGT
TGCCCTCTGATCTCGAGCCACTGTTCATCTTGAGGTTCTCGGTGGAGGAC
GACACCGAAGACGAGGCCGAGGACACCGATCCGCTCTTGCCGTTGTAGTG
GCCATTGGTGGTCAGCAGCTTCTGGGCGGCAACGGCCTCTGTGTTCTGAC
CAAAGGGAATGCTGCTCTTCATGTGGTTCTTGCCGGGGGTGATCGGGCGG
GTGGGCTCCCCAAACAGCCGAGAGTGGGAGTCGACGGTCTTCTGGCCGCG
ACGTGGTGCATCACCGTTGTTTTTCACTCCATTATCTTTCTCGGCAGCGA
ATATGTTGGACGCCATGCGATTCTTCACGTTCCTGGGGGTCTGCGGCATC
TCCGATCCAAAGATGTCGCTCGATCCGCCGCCCGGGGGCCTCAGCACCCT
CTTCTTTGCTTTGCCAACATTGTAAAGCTCAACGTGTTTGAAAGCAGCGT
AGGCGGCCATGTCGACTGATAACT
BS15836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31363-PC | 594 | Jupiter-RC | 1..594 | 610..17 | 2970 | 100 | Minus |
| CG31363-PD | 576 | Jupiter-RD | 45..576 | 548..17 | 2660 | 100 | Minus |
| CG31363-PE | 627 | Jupiter-RE | 229..627 | 415..17 | 1995 | 100 | Minus |
| CG31363-PH | 609 | Jupiter-RH | 211..609 | 415..17 | 1995 | 100 | Minus |
| CG31363-PA | 594 | Jupiter-RA | 45..436 | 548..157 | 1960 | 100 | Minus |
| CG31363-PE | 627 | Jupiter-RE | 1..196 | 610..415 | 980 | 100 | Minus |
| CG31363-PB | 558 | Jupiter-RB | 417..558 | 158..17 | 710 | 100 | Minus |
| CG31363-PA | 594 | Jupiter-RA | 455..594 | 156..17 | 700 | 100 | Minus |
| CG31363-PH | 609 | Jupiter-RH | 45..178 | 548..415 | 670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-RC | 1581 | CG31363-RC | 206..799 | 610..17 | 2970 | 100 | Minus |
| Jupiter-RD | 1517 | CG31363-RD | 204..735 | 548..17 | 2660 | 100 | Minus |
| Jupiter-RA | 1535 | CG31363-RA | 204..753 | 548..17 | 2470 | 96.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11592367..11592625 | 157..415 | 1295 | 100 | Plus |
| 3R | 32079331 | 3R | 11591168..11591310 | 17..159 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 11593631..11593768 | 413..550 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 11604141..11604203 | 548..610 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:34:33 has no hits.
BS15836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:27 Download gff for
BS15836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31363-PC | 1..594 | 17..610 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:54:54 Download gff for
BS15836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 201..799 | 17..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:56 Download gff for
BS15836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jupiter-RC | 201..799 | 17..618 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:56 Download gff for
BS15836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11591168..11591307 | 17..156 | 100 | <- | Plus |
| 3R | 11592367..11592624 | 157..414 | 100 | <- | Plus |
| 3R | 11593633..11593766 | 415..548 | 100 | <- | Plus |
| 3R | 11604142..11604208 | 549..618 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:54:54 Download gff for
BS15836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7416890..7417029 | 17..156 | 100 | <- | Plus |
| arm_3R | 7418089..7418346 | 157..414 | 100 | <- | Plus |
| arm_3R | 7419355..7419488 | 415..548 | 100 | <- | Plus |
| arm_3R | 7429864..7429930 | 549..618 | 94 | | Plus |
BS15836.pep Sequence
Translation from 16 to 609
> BS15836.pep
MAAYAAFKHVELYNVGKAKKRVLRPPGGGSSDIFGSEMPQTPRNVKNRMA
SNIFAAEKDNGVKNNGDAPRRGQKTVDSHSRLFGEPTRPITPGKNHMKSS
IPFGQNTEAVAAQKLLTTNGHYNGKSGSVSSASSSVSSSTENLKMNSGSR
SEGNPVTGEGYKVVANEYSQRQESSNGGTPVINKNRIPPGGYSSGLW*
BS15836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jupiter-PC | 197 | CG31363-PC | 1..197 | 1..197 | 1025 | 100 | Plus |
| Jupiter-PE | 208 | CG31363-PE | 1..208 | 1..197 | 1003 | 94.7 | Plus |
| Jupiter-PD | 191 | CG31363-PD | 11..191 | 17..197 | 925 | 97.8 | Plus |
| Jupiter-PA | 197 | CG31363-PA | 11..197 | 17..197 | 904 | 94.1 | Plus |
| Jupiter-PH | 202 | CG31363-PH | 11..202 | 17..197 | 903 | 92.2 | Plus |
