Clone Sequence Records
BS15839.3prime Sequence
871 bp (812 high quality bases) assembled on 2007-04-16
> BS15839.3prime
ATGGTCTAGAAAGCTTCTATATCGCACATCCCTTGCGCATGCCATACATT
ATTTTGAGTTCTGGATAGATGATCTTCCGTATCAGCTGGTTTGTCTTGCC
GGACAACATCGCTCGTCGGTTGTCCTTTTTCAGCACCTTGATGCCCGGCT
TGTGCACCAGGAATGCGTTGTCCAATATGTGGAACTCGTAGTCCATTACG
CAAAGCGCATAGCCCTGAGGCATCTTGTCGCTTTTACCCTCCCAGCTGAG
CCGTTCATCGTAATGGGGATCGGCATGAGTTCCAATATATATGGGCTCCC
AGTGCACATAGTAACCCGTTCGTTTTCCTATGTGAAACACACTTAGTTCA
TCTGTCTCGTTGGCGGACATCCACTCCTTGGACTTGGGCACCCCGTGGCA
GCTGGCGCACACTCGTTTGTGGAATGGTATGGCTTTGCCCGTGCGAAGGA
ACTCCTGTAGCTCTGTCTTGTCGTGTGGCACTGGGGAGTTCTCTTCCACC
TCGAAGATGGCCAATGGAAATACTCTGGGTGCCTTGCGTCTCAAGTACTG
TTCGTTGCGAGCAATCATCTCGAGAAACTTCTTGACCAGACCCGGGTTCG
GATACAGCTCGATGTCTGAAGCCAGAATAAAGTGGGTGAGTGCCGAGTCG
CGGGCAATGTTACGACCAACGTTCACCGGATACAGCAACTTCTTTTGCGC
CTTGTACAGGTGCCCGGAGCTGACGTTGAAGTACGGAGGTGGAAGTGTGC
AGTTGTATCCCGTCTTGAAGACTTCGTGAGGCTTGGGCACAGACTTAGGA
ATGTGCTTGGTTCCGAAGTAGATGTGGAAGGTGTATAGGCGCGCACCAGG
TGACTGCCGGGCAGACACTCT
BS15839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-PA | 1634 | CG9171-RA | 780..1634 | 871..18 | 4235 | 99.8 | Minus |
| CG9171-PB | 1634 | CG9171-RB | 780..1634 | 871..18 | 4235 | 99.8 | Minus |
| CG31912-PA | 765 | CG31912-RA | 24..187 | 709..871 | 780 | 99.3 | Plus |
| CG31912-PA | 765 | CG31912-RA | 1..27 | 612..638 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 3950 | CG9171-RG | 1371..2226 | 871..17 | 4255 | 99.9 | Minus |
| CG9171-RF | 3736 | CG9171-RF | 1157..2012 | 871..17 | 4255 | 99.9 | Minus |
| CG9171-RE | 3129 | CG9171-RE | 1211..2066 | 871..17 | 4255 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5770014..5770361 | 525..871 | 1690 | 99.7 | Plus |
| 2L | 23513712 | 2L | 5769316..5769516 | 17..217 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 5769747..5769947 | 327..527 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 5769573..5769688 | 214..329 | 580 | 100 | Plus |
| 2L | 23513712 | 2L | 12760577..12760683 | 138..244 | 250 | 82.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:36:40 has no hits.
BS15839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:28 Download gff for
BS15839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-PB | 780..1634 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:48 Download gff for
BS15839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 1211..2071 | 12..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:39:58 Download gff for
BS15839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 1211..2071 | 12..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:39:58 Download gff for
BS15839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5769317..5769513 | 18..214 | 100 | <- | Plus |
| 2L | 5769574..5769686 | 215..327 | 100 | <- | Plus |
| 2L | 5769748..5769944 | 328..524 | 100 | <- | Plus |
| 2L | 5770014..5770361 | 525..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:48 Download gff for
BS15839.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5769317..5769513 | 18..214 | 100 | <- | Plus |
| arm_2L | 5769574..5769686 | 215..327 | 100 | <- | Plus |
| arm_2L | 5769748..5769944 | 328..524 | 100 | <- | Plus |
| arm_2L | 5770014..5770361 | 525..871 | 99 | | Plus |
BS15839.5prime Sequence
889 bp (852 high quality bases) assembled on 2007-04-17
> BS15839.5prime
GAAGTTATCAGTCGACATGCGTTTTGAGCCTCTGGGCCAGAAAATGTTCA
CCCGCCGCAATTGGTTGTTGCGCTGCAGCATCCTTATCAATGTGGCGGTG
ATCCTGTACATTGGCAGTCAATTGATGATCGGCGGCGGCAACAACTTCTC
GAACGGCGGTGGCTTCCTGCTGCAGGAGCAGCAACAGGTGTCAATGATGC
AAGTGGGCTCCGCCTCATCAGCGGCCCAGGTGCAGCAGCAACAGCAGCCC
ACTCCCAAGAACCAGAACCAGGTGGCCGAGATCTTCGAGTCCGAGGAAAA
GCAGCTGGTCAATGCCAACGCAGATCCTCCAGCAGCAGCGGCTCAGGTGG
CTGATGGCGGTGCTGGAGCCCCGCAGTTGGCGAACGATAGTGGTGCCGGG
GCGGCTGCTCTGGGCGATCCCTCCCAGGTGATAGGAAACATTGGGCCCGG
CGGTGTCGCCGAGGTGAACAATAGCCAGTCTGACGGCGGCTACATAGTCA
CAGGCGATGAGAAGGAGCTGGAGGAGCGTGTGCGATCGTTGATCAACTGC
TTCGACCACGACTACCACCAACAGACCTTGCAGCGTGGCGACTTCTGGGT
GCTGCAGAACTACGTGCGGGCGGAGCATGGCGACATCAAGTGCCATGAGT
CGATCACCTACACCACGCACGCGGACTACACGTTCCTGGACAACCTGGTG
CCGCTGTTGGAGCGCTGGAACGCCCCGGTGAGCATTGCCATGCACGCGCC
CGGCACGGACTTCCAGCCCACTCTGGACTCGATCCGGTATCTGCGAGAGT
GTCTGCCCGGCAGTCACCTGGTGCGCGCCTATACCACCTTCCACATCTAC
TTCGGAAACCAGCACATTCCTAAGTCTGTGCCCAAGCCT
BS15839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-PA | 1634 | CG9171-RA | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG9171-PB | 1634 | CG9171-RB | 1..873 | 17..889 | 4315 | 99.7 | Plus |
| CG31912-PA | 765 | CG31912-RA | 94..714 | 889..269 | 3055 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 3950 | CG9171-RG | 590..1464 | 15..889 | 4345 | 99.8 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 376..1250 | 15..889 | 4345 | 99.8 | Plus |
| CG9171-RE | 3129 | CG9171-RE | 430..1304 | 15..889 | 4345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5770268..5770888 | 889..269 | 3075 | 99.7 | Minus |
| 2L | 23513712 | 2L | 5770951..5771204 | 268..15 | 1270 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:36:28 has no hits.
BS15839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:29 Download gff for
BS15839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-PB | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:51 Download gff for
BS15839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 423..1304 | 7..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:20:20 Download gff for
BS15839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 423..1304 | 7..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:20:20 Download gff for
BS15839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5770268..5770888 | 269..889 | 99 | <- | Minus |
| 2L | 5770951..5771212 | 9..268 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:51 Download gff for
BS15839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5770268..5770888 | 269..889 | 99 | <- | Minus |
| arm_2L | 5770951..5771212 | 9..268 | 98 | | Minus |
BS15839.complete Sequence
1667 bp assembled on 2007-05-07
GenBank Submission: FJ637973
> BS15839.complete
GAAGTTATCAGTCGACATGCGTTTTGAGCCTCTGGGCCAGAAAATGTTCA
CCCGCCGCAATTGGTTGTTGCGCTGCAGCATCCTTATCAATGTGGCGGTG
ATCCTGTACATTGGCAGTCAATTGATGATCGGCGGCGGCAACAACTTCTC
GAACGGCGGTGGCTTCCTGCTGCAGGAGCAGCAACAGGTGTCAATGATGC
AAGTGGGCTCCGCCTCATCAGCGGCCCAGGTGCAGCAGCAACAGCAGCCC
ACTCCCAAGAACCAGAACCAGGTGGCCGAGATCTTCGAGTCCGAGGAAAA
GCAGCTGGTCAATGCCAACGCAGATCCTCCAGCAGCAGCGGCTCAGGTGG
CTGATGGCGGTGCTGGAGCCCCGCAGTTGGCGAACGATAGTGGTGCCGGG
GCGGCTGCTCTGGGCGATCCCTCCCAGGTGATAGGAAACATTGGGCCCGG
CGGTGTCGCCGAGGTGAACAATAGCCAGTCTGACGGCGGCTACATAGTCA
CAGGCGATGAGAAGGAGCTGGAGGAGCGTGTGCGATCGTTGATCAACTGC
TTCGACCACGACTACCACCAACAGACCTTGCAGCGTGGCGACTTCTGGGT
GCTGCAGAACTACGTGCGGGCGGAGCATGGCGACATCAAGTGCCATGAGT
CGATCACCTACACCACGCACGCGGACTACACGTTCCTGGACAACCTGGTG
CCGCTGTTGGAGCGCTGGAACGCCCCGGTGAGCATTGCCATGCACGCGCC
CGGCACGGACTTCCAGCCCACTCTGGACTCGATCCGGTATCTGCGAGAGT
GTCTGCCCGGCAGTCACCTGGTGCGCGCCTATACCACCTTCCACATCTAC
TTCGGAACCAAGCACATTCCTAAGTCTGTGCCCAAGCCTCACGAAGTCTT
CAAGACGGGATACAACTGCACACTTCCACCTCCGTACTTCAACGTCAGCT
CCGGGCACCTGTACAAGGCGCAAAAGAAGTTGCTGTATCCGGTGAACGTT
GGTCGTAACATTGCCCGCGACTCGGCACTCACCCACTTTATTCTGGCTTC
AGACATCGAGCTGTATCCGAACCCGGGTCTGGTCAAGAAGTTTCTCGAGA
TGATTGCTCGCAACGAACAGTACTTGAGACGCAAGGCACCCAGAGTATTT
CCATTGGCCATCTTCGAGGTGGAAGAGAACTCCCCAGTGCCACACGACAA
GACAGAGCTACAGGAGTTCCTTCGCACGGGCAAAGCCATACCATTCCACA
AACGAGTGTGCGCCAGCTGCCACGGGGTGCCCAAGTCCAAGGAGTGGATG
TCCGCCAACGAGACAGATGAACTAAGTGTGTTTCACATAGGAAAACGAAC
GGGTTACTATGTGCACTGGGAGCCCATATATATTGGAACTCATGCCGATC
CCCATTACGATGAACGGCTCAGCTGGGAGGGTAAAAGCGACAAGATGCCT
CAGGGCTATGCGCTTTGCGTAATGGACTACGAGTTCCACATATTGGACAA
CGCATTCCTGGTGCACAAGCCGGGCATCAAGGTGCTGAAAAAGGACAACC
GACGAGCGATGTTGTCCGGCAAGACAAACCAGCTGATACGGAAGATCATC
TATCCAGAACTCAAAATAATGTATGGCATGCGCAAGGGATGTGCGATATA
GAAGCTTTCTAGACCAT
BS15839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 1635 | CG9171-PG | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| CG9171-RF | 1635 | CG9171-PF | 1..1635 | 17..1651 | 8175 | 100 | Plus |
| CG9171-RE | 1635 | CG9171-PE | 1..1635 | 17..1651 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 3950 | CG9171-RG | 590..2226 | 15..1651 | 8185 | 100 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 376..2012 | 15..1651 | 8185 | 100 | Plus |
| CG9171-RE | 3129 | CG9171-RE | 430..2066 | 15..1651 | 8185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5770014..5770888 | 1143..269 | 4375 | 100 | Minus |
| 2L | 23513712 | 2L | 5770951..5771204 | 268..15 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 5769316..5769516 | 1651..1451 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 5769747..5769947 | 1341..1141 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 5769573..5769688 | 1454..1339 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 12760577..12760683 | 1530..1424 | 250 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:36:25 has no hits.
BS15839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:01 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 1..1634 | 17..1650 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:08 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 320..1964 | 7..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:03:25 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 432..2066 | 17..1651 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:01 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 320..1964 | 7..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:34 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 432..2066 | 17..1651 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:34 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5769316..5769513 | 1454..1651 | 100 | <- | Minus |
| 2L | 5769574..5769686 | 1341..1453 | 100 | <- | Minus |
| 2L | 5769748..5769944 | 1144..1340 | 100 | <- | Minus |
| 2L | 5770014..5770888 | 269..1143 | 100 | <- | Minus |
| 2L | 5770951..5771202 | 17..268 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:03:25 Download gff for
BS15839.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5770951..5771202 | 17..268 | 100 | | Minus |
| arm_2L | 5769316..5769513 | 1454..1651 | 100 | <- | Minus |
| arm_2L | 5769574..5769686 | 1341..1453 | 100 | <- | Minus |
| arm_2L | 5769748..5769944 | 1144..1340 | 100 | <- | Minus |
| arm_2L | 5770014..5770888 | 269..1143 | 100 | <- | Minus |
BS15839.pep Sequence
Translation from 16 to 1650
> BS15839.pep
MRFEPLGQKMFTRRNWLLRCSILINVAVILYIGSQLMIGGGNNFSNGGGF
LLQEQQQVSMMQVGSASSAAQVQQQQQPTPKNQNQVAEIFESEEKQLVNA
NADPPAAAAQVADGGAGAPQLANDSGAGAAALGDPSQVIGNIGPGGVAEV
NNSQSDGGYIVTGDEKELEERVRSLINCFDHDYHQQTLQRGDFWVLQNYV
RAEHGDIKCHESITYTTHADYTFLDNLVPLLERWNAPVSIAMHAPGTDFQ
PTLDSIRYLRECLPGSHLVRAYTTFHIYFGTKHIPKSVPKPHEVFKTGYN
CTLPPPYFNVSSGHLYKAQKKLLYPVNVGRNIARDSALTHFILASDIELY
PNPGLVKKFLEMIARNEQYLRRKAPRVFPLAIFEVEENSPVPHDKTELQE
FLRTGKAIPFHKRVCASCHGVPKSKEWMSANETDELSVFHIGKRTGYYVH
WEPIYIGTHADPHYDERLSWEGKSDKMPQGYALCVMDYEFHILDNAFLVH
KPGIKVLKKDNRRAMLSGKTNQLIRKIIYPELKIMYGMRKGCAI*
BS15839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:42:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-PG | 544 | CG9171-PG | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PF | 544 | CG9171-PF | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PE | 544 | CG9171-PE | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PD | 544 | CG9171-PD | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PC | 544 | CG9171-PC | 1..544 | 1..544 | 2901 | 100 | Plus |
