Clone Sequence Records
BS15840.3prime Sequence
351 bp (351 high quality bases) assembled on 2007-04-16
> BS15840.3prime
ATGGTCTAGAAAGCTTCTAGCAAATATTGAGCCTTTCCATATCCCGGATT
TCCATGATATCCGTCTTCAGTCGCTGCTTAACGATCTCCCGCCAAATGGC
TTCCCGATCCCGGTTGTCCGTCACGCCCATTCTTTGCAGTGAGGAGTCTG
TGATCCGGAGTAGAGCCCTTCCGGTTATATCGTGCTGGGCGAAGAGCTGC
TCATACTGGGTGTATTCACCGCAGTGGCGGCGATACCACTTGAGCACATC
GCTAACTGTCCACAGGTACACTGCCTTCGGTCGCGTAGTTTTCGTTCTGG
TTTTGTTTTGCGTTGAGTTAATAGTTTCTTCACCCATGTCGACTGATAAC
T
BS15840.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30476-PA | 321 | CG30476-RA | 1..316 | 337..22 | 1580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 546 | CG30476-RA | 70..390 | 337..17 | 1590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14752943..14753113 | 187..17 | 840 | 99.4 | Minus |
2R | 25286936 | 2R | 14752590..14752742 | 337..185 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:11:35 has no hits.
BS15840.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:29 Download gff for
BS15840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30476-PA | 1..321 | 17..337 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:19 Download gff for
BS15840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 58..390 | 17..350 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:26:18 Download gff for
BS15840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 58..390 | 17..350 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:26:18 Download gff for
BS15840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14752578..14752742 | 185..350 | 96 | -> | Minus |
2R | 14752946..14753113 | 17..184 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:19 Download gff for
BS15840.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10640083..10640247 | 185..350 | 96 | -> | Minus |
arm_2R | 10640451..10640618 | 17..184 | 99 | | Minus |
BS15840.5prime Sequence
351 bp (351 high quality bases) assembled on 2007-04-17
> BS15840.5prime
GAAGTTATCACTCGACATGGGTGAAGAAACTATTAACTCAACGCAAAACA
AAACCAGAACGAAAACTACGCGACCGAAGGCAGTGTACCTGTGGACAGTT
AGCGATGTGCTCAAGTGGTATCGCCGCCACTGCGGTGAATACACCCAGTA
TGAGCAGCTCTTCGCCCAGCACGATATAACCGGAAGGGCTCTACTCCGGA
TCACAGACTCCTCACTGCAAAGAATGGGCGTGACGGACAACCGGGATCGG
GAAGCCATTTGGCGGGAGATCGTTAAGCAGCGACTGAAGACGGATATCAT
GGAAATCCGGGATATGGAAAGGCTCAATATTTACTAGAAGCTTTCTAGAC
C
BS15840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30476-PA | 321 | CG30476-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 546 | CG30476-RA | 70..390 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14752943..14753113 | 167..337 | 855 | 100 | Plus |
2R | 25286936 | 2R | 14752590..14752742 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:02:56 has no hits.
BS15840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:30 Download gff for
BS15840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30476-PA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:11 Download gff for
BS15840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 67..390 | 14..337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:43:14 Download gff for
BS15840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 67..390 | 14..337 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:43:14 Download gff for
BS15840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14752587..14752742 | 14..169 | 99 | -> | Plus |
2R | 14752946..14753113 | 170..337 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:11 Download gff for
BS15840.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10640092..10640247 | 14..169 | 99 | -> | Plus |
arm_2R | 10640451..10640618 | 170..337 | 100 | | Plus |
BS15840.complete Sequence
353 bp assembled on 2007-05-07
GenBank Submission: FJ637974
> BS15840.complete
GAAGTTATCAGTCGACATGGGTGAAGAAACTATTAACTCAACGCAAAACA
AAACCAGAACGAAAACTACGCGACCGAAGGCAGTGTACCTGTGGACAGTT
AGCGATGTGCTCAAGTGGTATCGCCGCCACTGCGGTGAATACACCCAGTA
TGAGCAGCTCTTCGCCCAGCACGATATAACCGGAAGGGCTCTACTCCGGA
TCACAGACTCCTCACTGCAAAGAATGGGCGTGACGGACAACCGGGATCGG
GAAGCCATTTGGCGGGAGATCGTTAAGCAGCGACTGAAGACGGATATCAT
GGAAATCCGGGATATGGAAAGGCTCAATATTTACTAGAAGCTTTCTAGAC
CAT
BS15840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 321 | CG30476-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-RA | 546 | CG30476-RA | 70..390 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14752943..14753113 | 167..337 | 855 | 100 | Plus |
2R | 25286936 | 2R | 14752590..14752742 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:39:01 has no hits.
BS15840.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:04 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 1..321 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:10 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 53..385 | 4..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:10 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 70..390 | 17..337 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:04 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 53..385 | 4..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:56 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ave-RA | 70..390 | 17..337 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:56 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14752590..14752742 | 17..169 | 100 | -> | Plus |
2R | 14752946..14753113 | 170..337 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:10 Download gff for
BS15840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10640095..10640247 | 17..169 | 100 | -> | Plus |
arm_2R | 10640451..10640618 | 170..337 | 100 | | Plus |
BS15840.pep Sequence
Translation from 16 to 336
> BS15840.pep
MGEETINSTQNKTRTKTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFA
QHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTDIMEIRDM
ERLNIY*
BS15840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ave-PA | 106 | CG30476-PA | 1..106 | 1..106 | 557 | 100 | Plus |