Clone Sequence Records
BS15841.complete Sequence
581 bp assembled on 2010-02-09
GenBank Submission: KX803940
> BS15841.complete
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTTGAAAGCTTTCTAGACCAT
BS15841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 789 | CG16707-PE | 1..549 | 17..565 | 2745 | 100 | Plus |
vsg-RB | 549 | CG16707-PB | 1..549 | 17..565 | 2745 | 100 | Plus |
vsg-RA | 549 | CG16707-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 2164 | CG16707-RE | 122..670 | 17..565 | 2745 | 100 | Plus |
vsg-RB | 2164 | CG16707-RB | 122..670 | 17..565 | 2745 | 100 | Plus |
vsg-RA | 2270 | CG16707-RA | 228..776 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9715745..9716222 | 88..565 | 2390 | 100 | Plus |
3L | 28110227 | 3L | 9714551..9714623 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:33:34 has no hits.
BS15841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:15 Download gff for
BS15841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RB | 111..658 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:49 Download gff for
BS15841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..775 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:23 Download gff for
BS15841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 232..779 | 17..564 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:36 Download gff for
BS15841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..775 | 17..564 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:36 Download gff for
BS15841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9714551..9714623 | 17..89 | 100 | -> | Plus |
3L | 9715747..9716221 | 90..564 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:49 Download gff for
BS15841.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9707651..9707723 | 17..89 | 100 | -> | Plus |
arm_3L | 9708847..9709321 | 90..564 | 100 | | Plus |
BS15841.3prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-16
> BS15841.3prime
ATGGTCTAGAAAGCTTTCAAAGGGTGTGGTAGTTGCGCTCGTTGCGGGCC
TTGTAGAACTTGTAGGCCACTAAGCCGATAGCGAGCAGGCCCAGAGTCAG
CACAATGCCGCCAATGAACGAGGATCCATCGAAATGACCGCACGGCACGG
GCTTCGGCGCCGGAGTGGTTGATGTGTGTGGCGGCGGCGTAGTTGTGGTC
GAGTTCGGAGACGGAGTGGTCGTAGATGTAGTTCCAGGCGTGGTGGTGGT
CGTTGCCGGAGTGGTGCTGCTGGTGGTGCTGGCCGGAGTGGTGCTGCTGG
TGGTGCTGGCTGGAGTAGTGGAAGTTGTGGTCTTCTCAGTCGATGTGGTA
ATTGGTGGCGTCGTCGTGGTCTTTTCAGTTGTGGTGCTCGTGGTTGAGGT
CGACGGTGGCGTCACAGTAGTGGTGGTGTCCGGCGGAGTGGTGGTGTTCT
TGGATTCCTGGGTGGTGGTGTCCGCTGGAGCCGGTGTGGTCACTTCTTCG
CACAAATTCGCGGAGAAGAGGCCCACAAAGAGGCACAAGATTAGGAATTT
CGCCTGCCGATTCATGTCGACTGATAACT
BS15841.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16707-PA | 549 | vsg-RA | 1..549 | 565..17 | 2745 | 100 | Minus |
CG16707-PB | 549 | vsg-RB | 1..549 | 565..17 | 2745 | 100 | Minus |
CG16707-PD | 552 | vsg-RD | 1..552 | 565..17 | 2690 | 99.4 | Minus |
CG16707-PC | 552 | vsg-RC | 1..552 | 565..17 | 2690 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 2164 | CG16707-RE | 122..670 | 565..17 | 2745 | 100 | Minus |
vsg-RB | 2164 | CG16707-RB | 122..670 | 565..17 | 2745 | 100 | Minus |
vsg-RA | 2270 | CG16707-RA | 228..776 | 565..17 | 2745 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9715745..9716222 | 494..17 | 2390 | 100 | Minus |
3L | 28110227 | 3L | 9714551..9714623 | 565..493 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:48:53 has no hits.
BS15841.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:30 Download gff for
BS15841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16707-PB | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:12 Download gff for
BS15841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 13..565 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:40:50 Download gff for
BS15841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 13..565 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:40:50 Download gff for
BS15841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9714551..9714623 | 493..565 | 100 | -> | Minus |
3L | 9715747..9716224 | 13..492 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:12 Download gff for
BS15841.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9707651..9707723 | 493..565 | 100 | -> | Minus |
arm_3L | 9708847..9709324 | 13..492 | 99 | | Minus |
BS15841.5prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-17
> BS15841.5prime
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTTGAAAGCTTTCTAGACC
BS15841.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16707-PA | 549 | vsg-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG16707-PB | 549 | vsg-RB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG16707-PD | 552 | vsg-RD | 1..552 | 17..565 | 2690 | 99.4 | Plus |
CG16707-PC | 552 | vsg-RC | 1..552 | 17..565 | 2690 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-RE | 2164 | CG16707-RE | 122..670 | 17..565 | 2745 | 100 | Plus |
vsg-RB | 2164 | CG16707-RB | 122..670 | 17..565 | 2745 | 100 | Plus |
vsg-RA | 2270 | CG16707-RA | 228..776 | 17..565 | 2745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9715745..9716222 | 88..565 | 2390 | 100 | Plus |
3L | 28110227 | 3L | 9714551..9714623 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:04:29 has no hits.
BS15841.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:30 Download gff for
BS15841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16707-PB | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:53 Download gff for
BS15841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 17..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:35 Download gff for
BS15841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vsg-RA | 228..778 | 17..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:35 Download gff for
BS15841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9714551..9714623 | 17..89 | 100 | -> | Plus |
3L | 9715747..9716224 | 90..569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:53 Download gff for
BS15841.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9707651..9707723 | 17..89 | 100 | -> | Plus |
arm_3L | 9708847..9709324 | 90..569 | 99 | | Plus |
BS15841.pep Sequence
Translation from 16 to 564
> BS15841.pep
MNRQAKFLILCLFVGLFSANLCEEVTTPAPADTTTQESKNTTTPPDTTTT
VTPPSTSTTSTTTEKTTTTPPITTSTEKTTTSTTPASTTSSTTPASTTSS
TTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAPKPVPCGHFDGSSF
IGGIVLTLGLLAIGLVAYKFYKARNERNYHTL*
BS15841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vsg-PB | 182 | CG16707-PB | 1..182 | 1..182 | 950 | 100 | Plus |
vsg-PA | 182 | CG16707-PA | 1..182 | 1..182 | 950 | 100 | Plus |
vsg-PE | 262 | CG16707-PE | 1..182 | 1..182 | 950 | 100 | Plus |
vsg-PC | 183 | CG16707-PC | 1..183 | 1..182 | 938 | 99.5 | Plus |
vsg-PD | 183 | CG16707-PD | 1..183 | 1..182 | 938 | 99.5 | Plus |