Clone BS15841 Report

Search the DGRC for BS15841

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptvsg-RA
Protein status:BS15841.pep: full length peptide match
Sequenced Size:581

Clone Sequence Records

BS15841.complete Sequence

581 bp assembled on 2010-02-09

GenBank Submission: KX803940

> BS15841.complete
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTTGAAAGCTTTCTAGACCAT

BS15841.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 789 CG16707-PE 1..549 17..565 2745 100 Plus
vsg-RB 549 CG16707-PB 1..549 17..565 2745 100 Plus
vsg-RA 549 CG16707-PA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 2164 CG16707-RE 122..670 17..565 2745 100 Plus
vsg-RB 2164 CG16707-RB 122..670 17..565 2745 100 Plus
vsg-RA 2270 CG16707-RA 228..776 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9715745..9716222 88..565 2390 100 Plus
3L 28110227 3L 9714551..9714623 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:33:34 has no hits.

BS15841.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:15 Download gff for BS15841.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RB 111..658 17..564 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:49 Download gff for BS15841.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..775 17..564 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:23 Download gff for BS15841.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 232..779 17..564 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:36 Download gff for BS15841.complete
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..775 17..564 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:36 Download gff for BS15841.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9714551..9714623 17..89 100 -> Plus
3L 9715747..9716221 90..564 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:49 Download gff for BS15841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9707651..9707723 17..89 100 -> Plus
arm_3L 9708847..9709321 90..564 100   Plus

BS15841.3prime Sequence

579 bp (579 high quality bases) assembled on 2007-04-16

> BS15841.3prime
ATGGTCTAGAAAGCTTTCAAAGGGTGTGGTAGTTGCGCTCGTTGCGGGCC
TTGTAGAACTTGTAGGCCACTAAGCCGATAGCGAGCAGGCCCAGAGTCAG
CACAATGCCGCCAATGAACGAGGATCCATCGAAATGACCGCACGGCACGG
GCTTCGGCGCCGGAGTGGTTGATGTGTGTGGCGGCGGCGTAGTTGTGGTC
GAGTTCGGAGACGGAGTGGTCGTAGATGTAGTTCCAGGCGTGGTGGTGGT
CGTTGCCGGAGTGGTGCTGCTGGTGGTGCTGGCCGGAGTGGTGCTGCTGG
TGGTGCTGGCTGGAGTAGTGGAAGTTGTGGTCTTCTCAGTCGATGTGGTA
ATTGGTGGCGTCGTCGTGGTCTTTTCAGTTGTGGTGCTCGTGGTTGAGGT
CGACGGTGGCGTCACAGTAGTGGTGGTGTCCGGCGGAGTGGTGGTGTTCT
TGGATTCCTGGGTGGTGGTGTCCGCTGGAGCCGGTGTGGTCACTTCTTCG
CACAAATTCGCGGAGAAGAGGCCCACAAAGAGGCACAAGATTAGGAATTT
CGCCTGCCGATTCATGTCGACTGATAACT

BS15841.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16707-PA 549 vsg-RA 1..549 565..17 2745 100 Minus
CG16707-PB 549 vsg-RB 1..549 565..17 2745 100 Minus
CG16707-PD 552 vsg-RD 1..552 565..17 2690 99.4 Minus
CG16707-PC 552 vsg-RC 1..552 565..17 2690 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 2164 CG16707-RE 122..670 565..17 2745 100 Minus
vsg-RB 2164 CG16707-RB 122..670 565..17 2745 100 Minus
vsg-RA 2270 CG16707-RA 228..776 565..17 2745 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9715745..9716222 494..17 2390 100 Minus
3L 28110227 3L 9714551..9714623 565..493 365 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:48:53 has no hits.

BS15841.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:30 Download gff for BS15841.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16707-PB 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:12 Download gff for BS15841.3prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 13..565 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:40:50 Download gff for BS15841.3prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 13..565 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:40:50 Download gff for BS15841.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9714551..9714623 493..565 100 -> Minus
3L 9715747..9716224 13..492 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:12 Download gff for BS15841.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9707651..9707723 493..565 100 -> Minus
arm_3L 9708847..9709324 13..492 99   Minus

BS15841.5prime Sequence

579 bp (579 high quality bases) assembled on 2007-04-17

> BS15841.5prime
GAAGTTATCAGTCGACATGAATCGGCAGGCGAAATTCCTAATCTTGTGCC
TCTTTGTGGGCCTCTTCTCCGCGAATTTGTGCGAAGAAGTGACCACACCG
GCTCCAGCGGACACCACCACCCAGGAATCCAAGAACACCACCACTCCGCC
GGACACCACCACTACTGTGACGCCACCGTCGACCTCAACCACGAGCACCA
CAACTGAAAAGACCACGACGACGCCACCAATTACCACATCGACTGAGAAG
ACCACAACTTCCACTACTCCAGCCAGCACCACCAGCAGCACCACTCCGGC
CAGCACCACCAGCAGCACCACTCCGGCAACGACCACCACCACGCCTGGAA
CTACATCTACGACCACTCCGTCTCCGAACTCGACCACAACTACGCCGCCG
CCACACACATCAACCACTCCGGCGCCGAAGCCCGTGCCGTGCGGTCATTT
CGATGGATCCTCGTTCATTGGCGGCATTGTGCTGACTCTGGGCCTGCTCG
CTATCGGCTTAGTGGCCTACAAGTTCTACAAGGCCCGCAACGAGCGCAAC
TACCACACCCTTTGAAAGCTTTCTAGACC

BS15841.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16707-PA 549 vsg-RA 1..549 17..565 2745 100 Plus
CG16707-PB 549 vsg-RB 1..549 17..565 2745 100 Plus
CG16707-PD 552 vsg-RD 1..552 17..565 2690 99.4 Plus
CG16707-PC 552 vsg-RC 1..552 17..565 2690 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-RE 2164 CG16707-RE 122..670 17..565 2745 100 Plus
vsg-RB 2164 CG16707-RB 122..670 17..565 2745 100 Plus
vsg-RA 2270 CG16707-RA 228..776 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9715745..9716222 88..565 2390 100 Plus
3L 28110227 3L 9714551..9714623 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:04:29 has no hits.

BS15841.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:30 Download gff for BS15841.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16707-PB 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:52:53 Download gff for BS15841.5prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 17..569 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:37:35 Download gff for BS15841.5prime
Subject Subject Range Query Range Percent Splice Strand
vsg-RA 228..778 17..569 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:37:35 Download gff for BS15841.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9714551..9714623 17..89 100 -> Plus
3L 9715747..9716224 90..569 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:52:53 Download gff for BS15841.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9707651..9707723 17..89 100 -> Plus
arm_3L 9708847..9709324 90..569 99   Plus

BS15841.pep Sequence

Translation from 16 to 564

> BS15841.pep
MNRQAKFLILCLFVGLFSANLCEEVTTPAPADTTTQESKNTTTPPDTTTT
VTPPSTSTTSTTTEKTTTTPPITTSTEKTTTSTTPASTTSSTTPASTTSS
TTPATTTTTPGTTSTTTPSPNSTTTTPPPHTSTTPAPKPVPCGHFDGSSF
IGGIVLTLGLLAIGLVAYKFYKARNERNYHTL*

BS15841.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
vsg-PB 182 CG16707-PB 1..182 1..182 950 100 Plus
vsg-PA 182 CG16707-PA 1..182 1..182 950 100 Plus
vsg-PE 262 CG16707-PE 1..182 1..182 950 100 Plus
vsg-PC 183 CG16707-PC 1..183 1..182 938 99.5 Plus
vsg-PD 183 CG16707-PD 1..183 1..182 938 99.5 Plus