Clone Sequence Records
BS15848.3prime Sequence
871 bp (769 high quality bases) assembled on 2007-04-16
> BS15848.3prime
TCCCTTTAAGGGCGCGCCAAANGAATGGNCTAGAAAGCTTTCACCCTTAT
GCCTCGCCCAGCACAGCTGACGTCGTTGAGGGCGGTCCCAAAGGCGCCTG
CTGCTGGGCAGCCAGGTTACCGTCGTAGTTCATTTGCTGCTCCAACGGAG
GAGACGCAAAGGCTCCCGCGGACAAATTCATTAGTTCGGGTTGTGGCTGA
GCGGGCTTGGTTTGATCCTGCATCTCTTGGCGCATTTGTTGTGGCGATTT
CACATAACTAATTGGAATGATGCCGGAGGTCTGTCCGTTGGTGGTGGCTA
GAGCCCAGCCGGTGTTCAGCAGATTGAGCGTCTGCTGGATGTCGCGGGGA
GCCACATGTAGCATTTGGCCGGCGCGCAGCGAAAGCTCGCTCGGGCTGCG
AGCCACGAATTCGTAAACGGCCTGAGTCTGAATCGGCGCAGTCCACTTGG
CCGGATTACGGGCTTCCTCCTGGGCGGTGTTCGTCACGGTTCCCAGCAGC
TTCATGATCAAGTAGGGAGCAGTAAAGATGAAGCTGATAAAGGCCAGCAC
CGGCCAGGGTGAGTTGCCCTTTCGCGGCACATTAGGTGCTCCTCTCGCCT
GGCCGTTGTTTTCGTTCAGTGCCTCGGCAAAGGCCTTCTTAAAGGCTGCC
GATGAAGGGTCCAGGTTCGATAGGCGCAGCCAATAGAGAATCTTTCTGTA
CATCCAGTTTAGACCGCGGAATATGGCAAACGTGGTCCAAAAACTGGGCA
AACACACTTCGCAGCCGTACAAAGTTCGTGGCCACGCCGAGAATGGCCCG
AAACGAGCTGGTCAGCGCGAAGAATGTGAAGTCCAGCATAGAGGCGATGT
TGCCGATGGCCGACACCAGAA
BS15848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4663-PA | 1323 | CG4663-RA | 495..1312 | 870..52 | 3980 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex13-RA | 1768 | CG4663-RA | 771..1588 | 870..52 | 4025 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13228456..13228868 | 52..464 | 2035 | 99.5 | Plus |
| 2R | 25286936 | 2R | 13229003..13229232 | 463..692 | 1150 | 100 | Plus |
| 2R | 25286936 | 2R | 13229287..13229464 | 692..870 | 830 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:49:15 has no hits.
BS15848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:35 Download gff for
BS15848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4663-PA | 496..1315 | 49..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:18 Download gff for
BS15848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 769..1591 | 49..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:00 Download gff for
BS15848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 769..1591 | 49..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:00 Download gff for
BS15848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13229288..13229464 | 693..871 | 98 | | Plus |
| 2R | 13228453..13228866 | 49..462 | 99 | <- | Plus |
| 2R | 13229003..13229232 | 463..692 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:18 Download gff for
BS15848.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9115958..9116371 | 49..462 | 99 | <- | Plus |
| arm_2R | 9116508..9116737 | 463..692 | 100 | <- | Plus |
| arm_2R | 9116793..9116969 | 693..871 | 98 | | Plus |
BS15848.5prime Sequence
876 bp (740 high quality bases) assembled on 2007-04-17
> BS15848.5prime
GAAGTTATCACTCGACATGGTCGACAACAATAACCTACGCAGTGCGGTGA
TCAGCGATGCCCCGCTACTGCCGCCCTCGAGCAGCATCGGAGTGGGCGTT
TCAAGCGGCGGAGGATATCCGCCGGAAGCGGTGCTGCGTACTCCGTATGG
CAATGTTAGGGCTCTGCCCGGACCGGCGCAGCCCCCTCCTCTGCCGCAAT
CCCCATTCCAGCAGACACAACAGTACGGTGGTTTCGGCAGCGGGTACGGC
GGAAACAACTACGGACTCGGGGGTTATGGTGGTTTCAACAGTGGCGCCTT
TGGATATGGTGGACTGGGTGGATTTGGAAGTGGACTTGGAAGTGGATTTG
GAAGTGGATACGGGTATGGAGGTGGCTATGGCGGAGGCTATGGTGGAGGC
TTCGGCGGTGGGTACAACAGATTTGGAGCAATGGGTGAAAACGATGCGGA
GCAGCGGTTCATTTATATGGCAGAGTCCAGCTCGCGCCCGGCCTTTCAGA
GCATCGAATCTCTGGTGTCGGCCATCGGCAACATCGCCTCTATGCTGGAC
TCCACATTCTTCGCGCTGACCAGCTCGTTTCGGGCCATTCTCGGCGTGGC
CACGAACTTTGTACGGCTGCGAAGTGTGTTTGCCCAGTTTTGGACCACGT
TTGCCATATTCCGCGGTCTAAACTGGATGTACAGAAAGATTCTCTATTGG
CTGCGCCTATCGAACCTGGACCCTTCATCGGCAGCCTTTAAGAAGGCCTT
TGCCGAGGCACTGAACGAAAACAACGGCCAGGCGAGAGGAGCACCTAATG
TGCCGCGAAAGGGCAACTCACCCTGGCCGGTGCTGGCCTTTATCAACTTC
ATCCTTTCTGCTCCCTACTTGATCAT
BS15848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4663-PA | 1323 | CG4663-RA | 1..860 | 17..876 | 4225 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex13-RA | 1768 | CG4663-RA | 276..1136 | 16..876 | 4260 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13229287..13229959 | 688..16 | 3365 | 100 | Minus |
| 2R | 25286936 | 2R | 13229044..13229232 | 876..688 | 900 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:52:43 has no hits.
BS15848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:35 Download gff for
BS15848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4663-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:42:46 Download gff for
BS15848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 272..1136 | 8..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:32:09 Download gff for
BS15848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 272..1136 | 8..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:32:09 Download gff for
BS15848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13229044..13229232 | 688..876 | 98 | <- | Minus |
| 2R | 13229288..13229963 | 8..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:42:46 Download gff for
BS15848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9116549..9116737 | 688..876 | 98 | <- | Minus |
| arm_2R | 9116793..9117468 | 8..687 | 99 | | Minus |
BS15848.complete Sequence
1350 bp assembled on 2009-08-24
GenBank Submission: KX801458
> BS15848.complete
GAAGTTATCAGTCGACATGGTCGACAACAATAACCTACGCAGTGCGGTGA
TCAGCGATGCCCCGCTACTGCCGCCCTCGAGCAGCATCGGAGTGGGCGTT
TCAAGCGGCGGAGGATATCCGCCGGAAGCGGTGCTGCGTACTCCGTATGG
CAATGTTAGGGCTCTGCCCGGACCGGCGCAGCCCCCTCCTCTGCCGCAAT
CCCCATTCCAGCAGACACAACAGTACGGTGGTTTCGGCAGCGGGTACGGC
GGAAACAACTACGGACTCGGGGGTTATGGTGGTTTCAACAGTGGCGCCTT
TGGATATGGTGGACTGGGTGGATTTGGAAGTGGACTTGGAAGTGGATTTG
GAAGTGGATACGGGTATGGAGGTGGCTATGGCGGAGGCTATGGTGGAGGC
TTCGGCGGTGGGTACAACAGATTTGGAGCAATGGGTGAAAACGATGCGGA
GCAGCGGTTCATTTATATGGCAGAGTCCAGCTCGCGCCCGGCCTTTCAGA
GCATCGAATCTCTGGTGTCGGCCATCGGCAACATCGCCTCTATGCTGGAC
TCCACATTCTTCGCGCTGACCAGCTCGTTTCGGGCCATTCTCGGCGTGGC
CACGAACTTTGTACGGCTGCGAAGTGTGTTTGCCCAGTTTTGGACCACGT
TTGCCATATTCCGCGGTCTAAACTGGATGTACAGAAAGATTCTCTATTGG
CTGCGCCTATCGAACCTGGACCCTTCATCGGCAGCCTTTAAGAAGGCCTT
TGCCGAGGCACTGAACGAAAACAACGGCCAGGCGAGAGGAGCACCTAATG
TGCCGCGAAAGGGCAACTCACCCTGGCCGGTGCTGGCCTTTATCAGCTTC
ATCTTTACTGCTCCCTACTTGATCATGAAGCTGCTGGGAACCGTGACGAA
CACCGCCCAGGAGGAAGCCCGTAATCCGGCCAAGTGGACTGCGCCGATTC
AGACTCAGGCCGTTTACGAATTCGTGGCTCGCAGCCCGAGCGAGCTTTCG
CTGCGCGCCGGCCAAATGCTACATGTGGCTCCCCGCGACATCCAGCAGAC
GCTCAATCTGCTGAACACCGGCTGGGCTCTAGCCACCACCAACGGACAGA
CCTCCGGCATCATTCCAATTAGTTATGTGAAATCGCCACAACAAATGCGC
CAAGAGATGCAGGATCAAACCAAGCCCGCTCAGCCACAACCCGAACTAAT
GAATTTGTCCGCGGGAGCCTTTGCGTCTCCTCCGTTGGAGCAGCAAATGA
ACTACGACTTTAACCTGGCTGCCCAGCAGCAGGCGCCTTTGGGACCGCCC
TCAACGACGTCAGCTGTGCTGGGCGAGGGATTCGCCTGAAAGCTTTCTAG
BS15848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex13-RA | 1323 | CG4663-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex13-RA | 1768 | CG4663-RA | 276..1599 | 16..1339 | 6620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13229287..13229959 | 688..16 | 3365 | 100 | Minus |
| 2R | 25286936 | 2R | 13228445..13228868 | 1339..916 | 2120 | 100 | Minus |
| 2R | 25286936 | 2R | 13229003..13229232 | 917..688 | 1150 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:32:09 has no hits.
BS15848.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:43 Download gff for
BS15848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4663-RA | 271..1588 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:25 Download gff for
BS15848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 277..1594 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:55 Download gff for
BS15848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex13-RA | 277..1594 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:55 Download gff for
BS15848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13228450..13228866 | 918..1334 | 100 | <- | Minus |
| 2R | 13229003..13229232 | 688..917 | 100 | <- | Minus |
| 2R | 13229288..13229958 | 17..687 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:25 Download gff for
BS15848.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9115955..9116371 | 918..1334 | 100 | <- | Minus |
| arm_2R | 9116508..9116737 | 688..917 | 100 | <- | Minus |
| arm_2R | 9116793..9117463 | 17..687 | 100 | | Minus |
BS15848.pep Sequence
Translation from 16 to 1338
> BS15848.pep
MVDNNNLRSAVISDAPLLPPSSSIGVGVSSGGGYPPEAVLRTPYGNVRAL
PGPAQPPPLPQSPFQQTQQYGGFGSGYGGNNYGLGGYGGFNSGAFGYGGL
GGFGSGLGSGFGSGYGYGGGYGGGYGGGFGGGYNRFGAMGENDAEQRFIY
MAESSSRPAFQSIESLVSAIGNIASMLDSTFFALTSSFRAILGVATNFVR
LRSVFAQFWTTFAIFRGLNWMYRKILYWLRLSNLDPSSAAFKKAFAEALN
ENNGQARGAPNVPRKGNSPWPVLAFISFIFTAPYLIMKLLGTVTNTAQEE
ARNPAKWTAPIQTQAVYEFVARSPSELSLRAGQMLHVAPRDIQQTLNLLN
TGWALATTNGQTSGIIPISYVKSPQQMRQEMQDQTKPAQPQPELMNLSAG
AFASPPLEQQMNYDFNLAAQQQAPLGPPSTTSAVLGEGFA*
BS15848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex13-PA | 440 | CG4663-PA | 1..440 | 1..440 | 2310 | 100 | Plus |
| CG14191-PA | 193 | CG14191-PA | 40..109 | 71..133 | 189 | 55.6 | Plus |
| CG9269-PA | 146 | CG9269-PA | 49..134 | 70..140 | 186 | 50 | Plus |
| CG14191-PA | 193 | CG14191-PA | 51..132 | 72..140 | 185 | 49.4 | Plus |
| CG15597-PB | 149 | CG15597-PB | 28..98 | 74..133 | 184 | 54.2 | Plus |
| TwdlT-PA | 286 | CG5812-PA | 62..137 | 71..151 | 183 | 53.7 | Plus |
| CG14191-PA | 193 | CG14191-PA | 91..174 | 71..138 | 177 | 43.3 | Plus |
| CG15597-PB | 149 | CG15597-PB | 38..132 | 71..140 | 177 | 46.4 | Plus |
| CG14191-PA | 193 | CG14191-PA | 103..181 | 71..140 | 168 | 51.9 | Plus |
| CG15597-PB | 149 | CG15597-PB | 42..139 | 71..133 | 153 | 36.7 | Plus |
