Clone Sequence Records
BS15853.complete Sequence
2420 bp assembled on 2009-12-07
GenBank Submission: KX804172
> BS15853.complete
GAAGTTATCAGTCGACATGCCCGATGACACGCAGGATGCCAAGGCGCAGA
AGTTGGCCGCGGCAAGGAAAAAGCTGAAGGAGTACCAGCAGCGCGCCAGC
AACAACAATGGGCAGCCGGGAGCAGAGGAGCCGGTGGCTGCCACCACGCA
ATCGCACTCGTCCACTGTGAGCATATCCAGCAATCTGTCGGAACGGTCAG
ACAGCGAGATAAATGTGAACGGTGGAGGAGCAGGTGGGACGCAGCCGCCG
GAGCAGTCTGCCCTGCCCACAGCCGCTTCTTATTTTGCCCAAAACGAGTC
GGAACACAATGGTGGACTGGCAGATGCCTCTAGCTTGCAGGCCATCCAGG
TGATCATCGCTGAAAAGGCCCAGCTCAATGCGGAGCTGACCAAGGTTCGC
CTGGCTTGCCGGGAGCGTGAGCTAGAGCTGGAGGAGCTTCGCATCCTCAA
GGATCAGAATCAATTGCGTCTGGAGCAGCTACAACAGCACTGCCAGGATC
AACAGTCGACCGGTGAGCAGCAGCGACAGCAGTACGCGCAACTCCAGGCA
CAACTGCTACAATCGCAGGCACAAATCAAGGACCAACAGTCGCATCTCAA
CGAACTAGAGGCCCAGCTAAAGCAGAGCAACCAGCATCAAGAGGAACTGC
AGCAACAGCTTTCCCAAAAATCGAACGAACTCGAGATGGCGCAGCTGAAG
CTGCGGCAGCTCTCAGACGAGTCTAGCGTCACCACAGACAACCGAGTGGA
GTCGCTGGTGCAAACACAATACATGTACGAGCAACAGATACGCGACCTCC
AAGCGATGGTGGGTCAACTAACGCAGGACAAGGAGCAGGCAGCTGGTCAG
TATCAAAACTATGTGCAGCATCAGAGTGGCGAGATCGCCAAGCTCAACGA
ACGAAACACAGAACTCTCAGAGGTACTGAACTCACTGAGGGAGCGAGAAC
GCCAGCTTGTGGAGCACGTGGGCGCCCTGGAGCGGGATATACAAAAGAAC
ATCAGCCTGCAGGCCCAATTTAAAGAGGCCAGTCAAGTGCAGCCATCCAA
GGAAGAAACCAGCGAGCAGAAAGCCTTAAAAGATGAACTGGCTGTCTTGA
AAGAGCAGATCGAAAACTTCGAGTTTGAGCGCCACGAATTCCAGCTGAAG
ATCAAGTCGCAGGACGATCAGCTGCAGTTAAAGAACTCGGCTTTAGACGA
GTTGGAAAAGCAACTCGAACGCTTGCAAGCTGAGCAGCCCGATCAGTCCA
AGCTGTTGGCCACCATGGAGTCAGACAAAGTGGCCGCATCGCGTGCCCTA
ACCCAGAATGTAGAGATGAAAAACCAGTTGGACGAACTGCAGCAGCGATT
TGTTCAGTTGACAAACGACAAAGCCGAGCTGGTCATCCGCTTGGATTCAG
AAGAGTTTGCCAACCGAGAAATCCGCCAGAACTACAACAGCATGGAGCAA
AAGCTTCAAGCAAATGAGGAGCGCTTTAAGTTCAAGGATGAGGAAATGAT
TAGACTATCGCACGAGAACGTGGAACTACAACGTCAGCAGTTAATGTTGC
AACAGCAGCTGGACCGTCTCAGGCATTATGAGGCAAAAGCTTATCACGCC
GGTGAGGAAACCGAAAAAGAGAATGGAGCAGATGCACCGGAAAACGAAGC
AGAGGAAGCGAAGGAAGTTGGTCTTTTGCATAATCATTCGCACGATCACT
CTCATCAGCATTCCGACGGTCATTGTCATGATAATGACCACGATCATTCC
CATGAACATAACCATCATAATGCTGGTGATCATGGTCATCCACATGATCA
TCCGCACGATCACACACATGATCATTCACATAGCCATCCACACGATCATC
AGCATGATCATCCACATGATCACGGCCAGAACCACGCCCACAGACAAGCA
GCTGAAACGCTGCCCACCGCCGAGGCCGTGGAACGCTTGCAATCGCGTTT
CACCACACTGATCAGCCAGGTCGCCGACTTGACGGAGGAGAAGCACAGCC
TGGAGCATCTGGTGCTCCAGCTGCAGAGCGAAACCGAAACGATTGGCGAG
TACATTGCCCTCTATCAAACGCAGAGGCGCATGCTAAAGCAGCGTGAGTA
CGAGAAGGCCGCCCAAATGCGTCTCTTGCAAGCGGAGCGAGAGCAGCTGC
GCGAGAAGATTGAGGCACTAAACAAGCTGGTGGTCAGTTTGGGCGTGGAG
CTACCCGCAGATGCCGCCCAGGCAAAGCAACCAGAAGCGGCCGCAGGTAG
CGAACACACTCCTGGCGAAGGTGAAAACTCGCAACAGATCATCAACAAGA
TACAGGACATTATCAGCGAGATCAAGGAGAACACGGAGCAGCCAAGCCAC
AACCATGCAGGAGACCATCTCAACTGTTGTATGGGCAAGTTCGAGGTAGT
CTAAAAGCTTTCTAGACCAT
BS15853.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-RA | 2388 | CG11061-PA | 1..2388 | 17..2404 | 11940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-RA | 2721 | CG11061-RA | 138..2531 | 14..2407 | 11970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22126209..22127206 | 1069..72 | 4990 | 100 | Minus |
| 2R | 25286936 | 2R | 22124757..22125583 | 2407..1581 | 4135 | 100 | Minus |
| 2R | 25286936 | 2R | 22125640..22126156 | 1583..1067 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 22127306..22127365 | 73..14 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:44:33 has no hits.
BS15853.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:37 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 1..2388 | 17..2404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:57 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 136..2521 | 17..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:27 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 141..2526 | 17..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:35 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 136..2521 | 17..2402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:46 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 141..2526 | 17..2402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:46 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22124762..22125581 | 1583..2402 | 100 | <- | Minus |
| 2R | 22125641..22126153 | 1070..1582 | 100 | <- | Minus |
| 2R | 22126209..22127204 | 74..1069 | 100 | <- | Minus |
| 2R | 22127306..22127362 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:27 Download gff for
BS15853.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18012267..18013086 | 1583..2402 | 100 | <- | Minus |
| arm_2R | 18013146..18013658 | 1070..1582 | 100 | <- | Minus |
| arm_2R | 18013714..18014709 | 74..1069 | 100 | <- | Minus |
| arm_2R | 18014811..18014867 | 17..73 | 100 | | Minus |
BS15853.3prime Sequence
958 bp (886 high quality bases) assembled on 2007-04-16
> BS15853.3prime
ATGGTCTAGAAAGCTTTTAGACTACCTCGAACTTGCCCATACAACAGTTG
AGATGGTCTCCTGCATGGTTGTGGCTTGGCTGCTCCGTGTTCTCCTTGAT
CTCGCTGATAATGTCCTGTATCTTGTTGATGATCTGTTGCGAGTTTTCAC
CTTCGCCAGGAGTGTGTTCGCTACCTGCGGCCGCTTCTGGTTGCTTTGCC
TGGGCGGCATCTGCGGGTAGCTCCACGCCCAAACTGACCACCAGCTTGTT
TAGTGCCTCAATCTTCTCGCGCAGCTGCTCTCGCTCCGCTTGCAAGAGAC
GCATTTGGGCGGCCTTCTCGTACTCACGCTGCTTTAGCATGCGCCTCTGC
GTTTGATAGAGGGCAATGTACTCGCCAATCGTTTCGGTTTCGCTCTGCAG
CTGGAGCACCAGATGCTCCAGGCTGTGCTTCTCCTCCGTCAAGTCGGCGA
CCTGGCTGATCAGTGTGGTGAAACGCGATTGCAAGCGTTCCACGGCCTCG
GCGGTGGGCAGCGTTTCAGCTGCTTGTCTGTGGGCGTGGTTCTGGCCGTG
ATCATGTGGATGATCATGCTGATGATCGTGTGGATGGCTATGTGAATGAT
CATGTGTGTGATCGTGCGGATGATCATGTGGATGACCATGATCACCAGCA
TTATGATGGTTATGTTCATGGGAATGATCGTGGTCATTATCATGACAATG
ACCGTCGGAATGCTGATGAGAGTGATCGTGCGAATGATTATGCAAAAGAC
CAACTTCCTTCGCTTCCTCTGCTTCGTTTTCCGGTGCATCTGCTCCATTC
TCTTTTTCGGTTTCCTCACCGGCGTGATAAGCTTTTGCCTCATAATGCCT
GAGACGGTCCAGCTGCTGTTGCAACATTAACTGCTGACGTTGTAGTTCCA
CGTTCTCGTGCGATAGTCTAATCATTTCCTCATCCTTGAACTTAAACCGC
TCCTCATT
BS15853.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11061-PB | 2268 | GM130-RB | 1327..2268 | 958..17 | 4685 | 99.8 | Minus |
| CG11061-PA | 2388 | GM130-RA | 1447..2388 | 958..17 | 4685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-RA | 2721 | CG11061-RA | 1587..2531 | 958..14 | 4710 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22124757..22125583 | 14..840 | 4135 | 100 | Plus |
| 2R | 25286936 | 2R | 22125640..22125760 | 838..958 | 590 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:21:29 has no hits.
BS15853.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:38 Download gff for
BS15853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11061-PA | 1447..2388 | 17..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:47:29 Download gff for
BS15853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 1587..2531 | 14..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:07 Download gff for
BS15853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 1587..2531 | 14..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:07 Download gff for
BS15853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22124757..22125581 | 14..838 | 100 | <- | Plus |
| 2R | 22125641..22125760 | 839..958 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:47:29 Download gff for
BS15853.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18012262..18013086 | 14..838 | 100 | <- | Plus |
| arm_2R | 18013146..18013265 | 839..958 | 99 | | Plus |
BS15853.5prime Sequence
905 bp (758 high quality bases) assembled on 2007-04-16
> BS15853.5prime
GAAGTTATCAGTCGACATGCCCGATGACACGCAGGATGCCAAGGCGCAGA
AGTTGGCCGCGGCAAGGAAAAAGCTGAAGGAGTACCAGCAGCGCGCCAGC
AACAACAATGGGCAGCCGGGAGCAGAGGAGCCGGTGGCTGCCACCACGCA
ATCGCACTCGTCCACTGTGAGCATATCCAGCAATCTGTCGGAACGGTCAG
ACAGCGAGATAAATGTGAACGGTGGAGGAGCAGGTGGGACGCAGCCGCCG
GAGCAGTCTGCCCTGCCCACAGCCGCTTCTTATTTTGCCCAAAACGAGTC
GGAACACAATGGTGGACTGGCAGATGCCTCTAGCTTGCAGGCCATCCAGG
TGATCATCGCTGAAAAGGCCCAGCTCAATGCGGAGCTGACCAAGGTTCGC
CTGGCTTGCCGGGAGCGTGAGCTAGAGCTGGAGGAGCTTCGCATCCTCAA
GGATCAGAATCAATTGCGTCTGGAGCAGCTACAACAGCACTGCCAGGATC
AACAGTCGACCGGTGAGCAGCAGCGACAGCAGTACGCGCAACTCCAGGCA
CAACTGCTACAATCGCAGGCACAAATCAAGGACCAACAGTCGCATCTCAA
CGAACTAGAGGCCCAGCTAAAGCAGAGCAACCAGCATCAAGAGGAACTGC
AGCAACAGCTTTCCCAAAAATCGAACGAACTCGAGATGGCGCAGCTGAAG
CTGCGGCAGCTCTCAGACGAGTCTAGCGTCACCACAGACAACCGAGTGGA
GTCGCTGGTGCAAACACAATACATGTACGAGCAACAGATACGCGACCTCC
NAGCGATGGTGGGTCAACTAACGCAGGACAAGGAGCAGGCAGCTGGTCAG
TATCAAAACTATGTGCAGCATCAGAGTGGCGAGATCGCCCAGCTCAACGA
ACGAA
BS15853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11061-PA | 2388 | GM130-RA | 1..889 | 17..905 | 4401 | 99.7 | Plus |
| CG11061-PB | 2268 | GM130-RB | 117..769 | 253..905 | 3221 | 99.6 | Plus |
| CG11061-PB | 2268 | GM130-RB | 1..117 | 17..133 | 585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-RA | 2721 | CG11061-RA | 138..1029 | 14..905 | 4434 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22126373..22127206 | 905..72 | 4144 | 99.8 | Minus |
| 2R | 25286936 | 2R | 22127306..22127365 | 73..14 | 300 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2625 | 475..659 | 158 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6894 | 614..786 | 110 | 58 | Plus |
BS15853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:38 Download gff for
BS15853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11061-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:47:34 Download gff for
BS15853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 136..1029 | 10..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:25:26 Download gff for
BS15853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 136..1029 | 10..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:25:26 Download gff for
BS15853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22126373..22127204 | 74..905 | 99 | <- | Minus |
| 2R | 22127306..22127367 | 10..73 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:47:34 Download gff for
BS15853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18013878..18014709 | 74..905 | 99 | <- | Minus |
| arm_2R | 18014811..18014872 | 10..73 | 96 | | Minus |
BS15853.pep Sequence
Translation from 16 to 2403
> BS15853.pep
MPDDTQDAKAQKLAAARKKLKEYQQRASNNNGQPGAEEPVAATTQSHSST
VSISSNLSERSDSEINVNGGGAGGTQPPEQSALPTAASYFAQNESEHNGG
LADASSLQAIQVIIAEKAQLNAELTKVRLACRERELELEELRILKDQNQL
RLEQLQQHCQDQQSTGEQQRQQYAQLQAQLLQSQAQIKDQQSHLNELEAQ
LKQSNQHQEELQQQLSQKSNELEMAQLKLRQLSDESSVTTDNRVESLVQT
QYMYEQQIRDLQAMVGQLTQDKEQAAGQYQNYVQHQSGEIAKLNERNTEL
SEVLNSLRERERQLVEHVGALERDIQKNISLQAQFKEASQVQPSKEETSE
QKALKDELAVLKEQIENFEFERHEFQLKIKSQDDQLQLKNSALDELEKQL
ERLQAEQPDQSKLLATMESDKVAASRALTQNVEMKNQLDELQQRFVQLTN
DKAELVIRLDSEEFANREIRQNYNSMEQKLQANEERFKFKDEEMIRLSHE
NVELQRQQLMLQQQLDRLRHYEAKAYHAGEETEKENGADAPENEAEEAKE
VGLLHNHSHDHSHQHSDGHCHDNDHDHSHEHNHHNAGDHGHPHDHPHDHT
HDHSHSHPHDHQHDHPHDHGQNHAHRQAAETLPTAEAVERLQSRFTTLIS
QVADLTEEKHSLEHLVLQLQSETETIGEYIALYQTQRRMLKQREYEKAAQ
MRLLQAEREQLREKIEALNKLVVSLGVELPADAAQAKQPEAAAGSEHTPG
EGENSQQIINKIQDIISEIKENTEQPSHNHAGDHLNCCMGKFEVV*
BS15853.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-PA | 795 | CG11061-PA | 1..795 | 1..795 | 4062 | 100 | Plus |
| lva-PD | 2779 | CG6450-PD | 830..1465 | 114..783 | 260 | 20.6 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 587..1017 | 116..534 | 239 | 23.7 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 590..1020 | 116..534 | 239 | 23.7 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 612..1042 | 116..534 | 239 | 23.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 976..1669 | 107..718 | 207 | 20.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 1053..1470 | 92..533 | 205 | 21.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 1056..1473 | 92..533 | 205 | 21.9 | Plus |
| lva-PD | 2779 | CG6450-PD | 1961..2370 | 162..551 | 202 | 22.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 665..1209 | 110..537 | 189 | 19.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 668..1212 | 110..537 | 189 | 19.9 | Plus |
| lva-PD | 2779 | CG6450-PD | 1284..1731 | 105..527 | 188 | 22.5 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 259..727 | 101..546 | 183 | 20.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 351..1116 | 87..774 | 178 | 20.9 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 708..1324 | 6..560 | 178 | 19.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 711..1327 | 6..560 | 178 | 19.9 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 234..724 | 101..546 | 176 | 22.7 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 483..980 | 117..553 | 170 | 19.2 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 486..983 | 117..553 | 170 | 19.2 | Plus |
