Clone BS15854 Report

Search the DGRC for BS15854

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptSu(var)2-10-RD
Protein status:BS15854.pep: full length peptide match
Sequenced Size:1838

Clone Sequence Records

BS15854.complete Sequence

1838 bp assembled on 2009-12-07

GenBank Submission: KX805206

> BS15854.complete
GAAGTTATCAGTCGACATGCGAAAGACCCGCTCTCAGACGGCTCGCACGC
AGGCGGAAAATGCCGCAACATCTTCGAGCCCCGGGCACCAGTCGACTTCG
TCAGCGCCAATAGCAGTTAATCCCTTTGATTCCACCAAGTACAAGGAATG
TGAGCAAATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGT
CGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGC
ATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCA
GGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACA
TCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAG
CCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGG
CGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCA
TCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCC
TTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACG
CAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGC
AGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAG
GTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTC
GTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACA
ACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTG
GAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCT
GTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACA
CTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAACA
CAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACAC
GCGAGGCTTAATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAG
CCACCACTATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGCAAGATGAAA
ATGTTGCTGCCTTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGA
TGCCAGTCTCTACCTGCAAATGAATGAGCGTAAGCCCACGTGGAACTGCC
CTGTATGCGACAAGCCGGCCATTTATGACAACCTGGTCATAGATGGCTAC
TTCCAGGAGGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGATACTGAGAT
TCAACTTCATCAGGATGGATCTTGGAGCACACCAGGACTACGGAGCGAGA
CGCAGATCCTTGATACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATA
TCGGATGACATAGAACTTATCTCGGATGACGCCAAGCCAGTAAAGAGGGA
TTTGTCCCCAGCACAGGACGAACAGCCCACATCAACGTCAAACAGTGAAA
CTGTTGACCTAACGTTAAGCGATTCAGACGACGACATGCCGCTGGCTAAG
CGTCGTCCGCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTCGAACGGCAG
CGGTGGCGGCCAACGTGCCTATACCCCGGCACAGCAGCCCCAGCAATCCG
GTGGTAATGTTTTTAAAAAACCTCAGAAAGCGGAGGAGCTTTACAAGCGT
GTTCATTTAGGAGTTTGGCTGCGCCCACGAAAACCCAAGCCAGAGAGCTC
AAGGCGCCCAAACGTCGGCTAAAAGCTTTCTAGACCAT

BS15854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RD 1806 CG8068-PD 1..1806 17..1822 9030 100 Plus
Su(var)2-10-RH 1710 CG8068-PH 1..1686 17..1702 8430 100 Plus
Su(var)2-10-RM 1713 CG8068-PM 1..1685 17..1701 8425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RD 2159 CG8068-RD 202..2007 17..1822 9030 100 Plus
Su(var)2-10-RH 2943 CG8068-RH 202..1887 17..1702 8430 100 Plus
Su(var)2-10-RM 2149 CG8068-RM 202..1886 17..1701 8425 100 Plus
Su(var)2-10-RH 2943 CG8068-RH 2590..2669 1700..1779 400 100 Plus
Su(var)2-10-RH 2943 CG8068-RH 2748..2791 1779..1822 220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117176..9117852 144..820 3385 100 Plus
2R 25286936 2R 9117917..9118157 821..1061 1205 100 Plus
2R 25286936 2R 9118215..9118449 1062..1296 1175 100 Plus
2R 25286936 2R 9118505..9118672 1296..1463 840 100 Plus
2R 25286936 2R 9118900..9119049 1553..1702 750 100 Plus
2R 25286936 2R 9116323..9116457 17..151 660 99.3 Plus
2R 25286936 2R 9118737..9118829 1462..1554 465 100 Plus
2R 25286936 2R 9119752..9119831 1700..1779 400 100 Plus
2R 25286936 2R 9119910..9119953 1779..1822 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:44:00 has no hits.

BS15854.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:38 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 1..1806 17..1822 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:55 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 198..2001 17..1820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:12 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 202..2005 17..1820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:05 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 198..2001 17..1820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:35 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 202..2005 17..1820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:35 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9116323..9116451 17..145 100 -> Plus
2R 9117178..9117852 146..820 100 -> Plus
2R 9117917..9118157 821..1061 100 -> Plus
2R 9118215..9118449 1062..1296 100 -> Plus
2R 9118506..9118672 1297..1463 100 -> Plus
2R 9118739..9118827 1464..1552 100 -> Plus
2R 9118900..9119047 1553..1700 100 -> Plus
2R 9119753..9119831 1701..1779 100 -> Plus
2R 9119911..9119951 1780..1820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:12 Download gff for BS15854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5003828..5003956 17..145 100 -> Plus
arm_2R 5004683..5005357 146..820 100 -> Plus
arm_2R 5005422..5005662 821..1061 100 -> Plus
arm_2R 5005720..5005954 1062..1296 100 -> Plus
arm_2R 5006011..5006177 1297..1463 100 -> Plus
arm_2R 5006244..5006332 1464..1552 100 -> Plus
arm_2R 5006405..5006552 1553..1700 100 -> Plus
arm_2R 5007258..5007336 1701..1779 100 -> Plus
arm_2R 5007416..5007456 1780..1820 100   Plus

BS15854.3prime Sequence

876 bp (732 high quality bases) assembled on 2007-04-16

> BS15854.3prime
ATGGTCTAGAAAGCTTTTAGCCGACGTTTGGGCGCCTTGAGCTCTCTGGC
TTGGGTTTTCGTGGGCGCAGCCAAACTCCTAAATGAACACGCTTGTAAAG
CTCCTCCGCTTTCTGAGGTTTTTTAAAAACATTACCACCGGATTGCTGGG
GCTGCTGTGCCGGGGTATAGGCACGTTGGCCGCCACCGCTGCCGTTCGAC
GTGGAACTGGCGACGGCTTGCTTGGCGGGCGGACGACGCTTAGCCAGCGG
CATGTCGTCGTCTGAATCGCTTAACGTTAGGTCAACAGTTTCACTGTTTG
ACGTTGATGTGGGCTGTTCGTCCTGTGCTGGGGACAAATCCCTCTTTACT
GGCTTGGCGTCATCCGAGATAAGTTCTATGTCATCCGATATAACCTCAAC
CTTTTGGGCGGGCTTTGAAGGCGTATCAAGGATCTGCGTCTCGCTCCGTA
GTCCTGGTGTGCTCCAAGATCCATCCTGATGAAGTTGAATCTCAGTATCA
TCACTCTTTAGAAGCGACGAGCCCAACACCTCCTGGAAGTAGCCATCTAT
GACCAGGTTGTCATAAATGGCCGGCTTGTCGCATACAGGGCAGTTCCACG
TGGGCTTACGCTCATTCATTTGCAGGTAGAGACTGGCATCGAAGCATTGC
AGATGCGAGCAGGTTGATGCTCGACAAGGCAGCAACATTTTCATCTTGCC
CAACGGGCAGTTAAGGGAAACCTTCAGCATAGTGGTGGCTATTTCGCAGT
CAGCATCCTCAGTCAGCTTCTCTTTGATTAAGCCTCGCGTGTAGTCCGCT
GGTTTTACGCCCTTCGTCTTCATTCGCTGCAAAAGCTGTGTTGAGGTGAG
CTTCTTTACCAGGTATACGGCCAGAC

BS15854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PD 1806 Su(var)2-10-RD 947..1806 876..17 4300 100 Minus
CG8068-PC 1698 Su(var)2-10-RC 839..1698 876..17 4300 100 Minus
CG8068-PA 1665 Su(var)2-10-RA 806..1665 876..17 4300 100 Minus
CG8068-PH 1710 Su(var)2-10-RH 947..1686 876..137 3700 100 Minus
CG8068-PF 1602 Su(var)2-10-RF 839..1578 876..137 3700 100 Minus
CG8068-PE 1569 Su(var)2-10-RE 806..1545 876..137 3700 100 Minus
CG8068-PG 1815 Su(var)2-10-RG 839..1576 876..139 3690 100 Minus
CG8068-PB 1782 Su(var)2-10-RB 806..1543 876..139 3690 100 Minus
CG8068-PI 1923 Su(var)2-10-RI 947..1684 876..139 3690 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RA 2063 CG8068-RA 1052..1911 876..17 4300 100 Minus
Su(var)2-10-RC 2389 CG8068-RC 1378..2237 876..17 4300 100 Minus
Su(var)2-10-RD 2159 CG8068-RD 1148..2007 876..17 4300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9118215..9118449 777..543 1175 100 Minus
2R 25286936 2R 9118505..9118672 543..376 840 100 Minus
2R 25286936 2R 9118900..9119049 286..137 750 100 Minus
2R 25286936 2R 9118059..9118157 876..778 495 100 Minus
2R 25286936 2R 9118737..9118829 377..285 465 100 Minus
2R 25286936 2R 9119752..9119831 139..60 400 100 Minus
2R 25286936 2R 9119910..9119953 60..17 220 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:55:22 has no hits.

BS15854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:39 Download gff for BS15854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PD 947..1806 17..876 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:43 Download gff for BS15854.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 1148..2009 13..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:25:37 Download gff for BS15854.3prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RD 1148..2009 13..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:25:37 Download gff for BS15854.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9119753..9119831 60..138 100 -> Minus
2R 9119911..9119955 13..59 95   Minus
2R 9118059..9118157 778..876 100 -> Minus
2R 9118215..9118449 543..777 100 -> Minus
2R 9118506..9118672 376..542 100 -> Minus
2R 9118739..9118827 287..375 100 -> Minus
2R 9118900..9119047 139..286 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:43 Download gff for BS15854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5007258..5007336 60..138 100 -> Minus
arm_2R 5007416..5007460 13..59 95   Minus
arm_2R 5005564..5005662 778..876 100 -> Minus
arm_2R 5005720..5005954 543..777 100 -> Minus
arm_2R 5006011..5006177 376..542 100 -> Minus
arm_2R 5006244..5006332 287..375 100 -> Minus
arm_2R 5006405..5006552 139..286 100 -> Minus

BS15854.5prime Sequence

888 bp (799 high quality bases) assembled on 2007-04-17

> BS15854.5prime
GAAGTTATCAGTCGACATGCGAAAGACCCGCTCTCAGACGGCTCGCACGC
AGGCGGAAAATGCCGCAACATCTTCGAGCCCCGGGCACCAGTCGACTTCG
TCAGCGCCAATAGCAGTTAATCCCTTTGATTCCACCAAGTACAAGGAATG
TGAGCAAATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGT
CGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGC
ATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCA
GGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACA
TCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAG
CCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGG
CGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCA
TCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCC
TTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACG
CAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGC
AGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAG
GTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTC
GTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACA
ACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTG
GAGCCCCAGCGTCCGCCGCGACCCGTTTATGTCACGTC

BS15854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG8068-PH 1710 Su(var)2-10-RH 1..872 17..888 4310 99.7 Plus
CG8068-PD 1806 Su(var)2-10-RD 1..872 17..888 4310 99.7 Plus
CG8068-PI 1923 Su(var)2-10-RI 1..872 17..888 4310 99.7 Plus
CG8068-PC 1698 Su(var)2-10-RC 20..764 144..888 3675 99.7 Plus
CG8068-PF 1602 Su(var)2-10-RF 20..764 144..888 3675 99.7 Plus
CG8068-PG 1815 Su(var)2-10-RG 20..764 144..888 3675 99.7 Plus
CG8068-PE 1569 Su(var)2-10-RE 1..731 158..888 3605 99.7 Plus
CG8068-PB 1782 Su(var)2-10-RB 1..731 158..888 3605 99.7 Plus
CG8068-PA 1665 Su(var)2-10-RA 1..731 158..888 3605 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-RM 2149 CG8068-RM 202..1073 17..888 4330 99.8 Plus
Su(var)2-10-RN 2414 CG8068-RN 202..1073 17..888 4330 99.8 Plus
Su(var)2-10-RL 2150 CG8068-RL 202..1073 17..888 4330 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9117176..9117852 144..820 3385 100 Plus
2R 25286936 2R 9116323..9116457 17..151 660 99.3 Plus
2R 25286936 2R 9117917..9117984 821..888 310 97.1 Plus
Blast to na_te.dros performed 2015-02-10 23:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 6610..6641 859..828 115 84.4 Minus

BS15854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:39 Download gff for BS15854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8068-PH 1..872 17..888 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:15 Download gff for BS15854.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RI 196..1073 7..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:49:41 Download gff for BS15854.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-10-RL 196..1073 7..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:49:41 Download gff for BS15854.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9116317..9116451 7..145 97 -> Plus
2R 9117178..9117852 146..820 100 -> Plus
2R 9117917..9117984 821..888 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:15 Download gff for BS15854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5003822..5003956 7..145 97 -> Plus
arm_2R 5004683..5005357 146..820 100 -> Plus
arm_2R 5005422..5005489 821..888 97   Plus

BS15854.pep Sequence

Translation from 16 to 1821

> BS15854.pep
MRKTRSQTARTQAENAATSSSPGHQSTSSAPIAVNPFDSTKYKECEQMVQ
MLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNLELLAPKVQEVYAQ
SVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVGSGQGVQVPGGQMNV
VGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNTQRV
QEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQLRFCLVETSCDQED
CFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVKLSPTVT
NTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRGLIK
EKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDASLYL
QMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQLHQD
GSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDAKPVKRDLSPAQ
DEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQAVASSTSNGSGGGQR
AYTPAQQPQQSGGNVFKKPQKAEELYKRVHLGVWLRPRKPKPESSRRPNV
G*

BS15854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-10-PD 601 CG8068-PD 1..601 1..601 3130 100 Plus
Su(var)2-10-PM 570 CG8068-PM 1..562 1..562 2918 100 Plus
Su(var)2-10-PL 584 CG8068-PL 1..574 1..574 2918 98.4 Plus
Su(var)2-10-PC 565 CG8068-PC 2..565 36..601 2918 99.1 Plus
Su(var)2-10-PH 569 CG8068-PH 1..562 1..562 2918 100 Plus