Clone Sequence Records
BS15858.complete Sequence
806 bp assembled on 2010-02-09
GenBank Submission: KX805824
> BS15858.complete
GAAGTTATCAGTCGACATGGTGAACAACACTGTTGATACTGAAGCCACAG
AGATTCGCTGCCAGGAGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATC
CTGGCCGAACCGGCACCCAATGTGGCCGTTCCAAAACGACCGGTCACCCC
TGGCAAGAACGTTAGCGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCG
AGGAACGTCGCATTTCTCTAGAAGCCAAGAAGATGGCTGACATCTCCACT
AAGCTGGCTAAAGTCGAGGAGGCGACTCGCAAAAAGGATGAGATCACCAA
TGAGTTTATTACTCAGACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGC
ATGTGGAGAAGCGAGAGGCCATCATCAGTGACATGAAGGAGAAGCTAAAG
ATCCATGCCCAGGATATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAA
GGCCAACGAGCAGAAGGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTC
TTCGCGATGAGAATATCAAGAAAATGTTGGATCGCCTAAAGGAGCATAAC
ACAATCAAAATTGCCGAAATCAAATCGCAGAACGATCAATTGGAATGTCA
AAAGATCGAGGAGAAAGCGCGCATTTATGAGAACAAATTGTTCGCCGCCG
AGCAGAAACGCGAAAAGGAATTGCAAAAAAAAATTGAAAAAGTTCAAAAA
CTCGAACGTCGCGCTGAGCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGA
TTTGGATGGTCAGCAGAGCGCCATTGCCTCCTCAGGCTAAAAGCTTTCTA
GACCAT
BS15858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 774 | CG31641-PC | 1..774 | 17..790 | 3870 | 100 | Plus |
stai-RD | 1146 | CG31641-PD | 400..1146 | 44..790 | 3735 | 100 | Plus |
stai-RE | 909 | CG31641-PE | 164..909 | 45..790 | 3730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1024 | 17..790 | 3870 | 100 | Plus |
stai-RD | 2872 | CG31641-RD | 537..1283 | 44..790 | 3735 | 100 | Plus |
stai-RE | 2395 | CG31641-RE | 815..1560 | 45..790 | 3730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 215..400 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 43..214 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 548..709 | 795 | 99.4 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 397..547 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123064 | 704..790 | 435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:57:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 368..452 | 110 | 58.8 | Plus |
BS15858.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:48 Download gff for
BS15858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 250..1021 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:46 Download gff for
BS15858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1022 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:52 Download gff for
BS15858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 250..1021 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:04 Download gff for
BS15858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1022 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:04 Download gff for
BS15858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
2L | 6122978..6123062 | 704..788 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:46 Download gff for
BS15858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
arm_2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
arm_2L | 6122978..6123062 | 704..788 | 100 | | Plus |
BS15858.3prime Sequence
804 bp (804 high quality bases) assembled on 2007-04-16
> BS15858.3prime
ATGGTCTAGAAAGCTTTTAGCCTGAGGAGGCAATGGCGCTCTGCTGACCA
TCCAAATCCTGGGCCTGGGCCTTGTTCTGGCGCACGAGCTCAGCGCGACG
TTCGAGTTTTTGAACTTTTTCAATTTTTTTTTGCAATTCCTTTTCGCGTT
TCTGCTCGGCGGCGAACAATTTGTTCTCATAAATGCGCGCTTTCTCCTCG
ATCTTTTGACATTCCAATTGATCGTTCTGCGATTTGATTTCGGCAATTTT
GATTGTGTTATGCTCCTTTAGGCGATCCAACATTTTCTTGATATTCTCAT
CGCGAAGAGACTGAGCAATCTTCAACTTTTCCTCGATTGCCTTCTGCTCG
TTGGCCTTCTGCTGCTCAAGAGTCTCACGCGTCTTTTCGATATCCTGGGC
ATGGATCTTTAGCTTCTCCTTCATGTCACTGATGATGGCCTCTCGCTTCT
CCACATGCAGCTCCATTTTCGACTCCAGCTGCTCCTTGGTCTGAGTAATA
AACTCATTGGTGATCTCATCCTTTTTGCGAGTCGCCTCCTCGACTTTAGC
CAGCTTAGTGGAGATGTCAGCCATCTTCTTGGCTTCTAGAGAAATGCGAC
GTTCCTCGGCCGCCTTAAGTTTCTGCTCAATCTCCTCGACGCTAACGTTC
TTGCCAGGGGTGACCGGTCGTTTTGGAACGGCCACATTGGGTGCCGGTTC
GGCCAGGATGACCTCATAGCTCAATCCCCCGCGGGACTTCTCCTGGCAGC
GAATCTCTGTGGCTTCAGTATCAACAGTGTTGTTCACCATGTCGACTGAT
AACT
BS15858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31641-PC | 774 | stai-RC | 1..774 | 790..17 | 3870 | 100 | Minus |
CG31641-PB | 909 | stai-RB | 164..909 | 762..17 | 3730 | 100 | Minus |
CG31641-PA | 753 | stai-RA | 164..666 | 762..260 | 2515 | 100 | Minus |
CG31641-PA | 753 | stai-RA | 667..753 | 103..17 | 435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1024 | 790..17 | 3870 | 100 | Minus |
stai-RD | 2872 | CG31641-RD | 537..1283 | 763..17 | 3735 | 100 | Minus |
stai-RE | 2395 | CG31641-RE | 815..1560 | 762..17 | 3730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 592..407 | 930 | 100 | Minus |
2L | 23513712 | 2L | 6121772..6121943 | 764..593 | 860 | 100 | Minus |
2L | 23513712 | 2L | 6122698..6122859 | 259..98 | 795 | 99.4 | Minus |
2L | 23513712 | 2L | 6122260..6122410 | 410..260 | 755 | 100 | Minus |
2L | 23513712 | 2L | 6122978..6123064 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 07:50:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 439..355 | 110 | 58.8 | Minus |
BS15858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:42 Download gff for
BS15858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31641-PC | 1..774 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:22 Download gff for
BS15858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1024 | 17..790 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:46:26 Download gff for
BS15858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1024 | 17..790 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:46:26 Download gff for
BS15858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6101771..6101798 | 763..790 | 100 | -> | Minus |
2L | 6121774..6121943 | 593..762 | 100 | -> | Minus |
2L | 6122005..6122190 | 407..592 | 100 | -> | Minus |
2L | 6122264..6122410 | 260..406 | 100 | -> | Minus |
2L | 6122698..6122853 | 104..259 | 100 | -> | Minus |
2L | 6122978..6123064 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:22 Download gff for
BS15858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6101771..6101798 | 763..790 | 100 | -> | Minus |
arm_2L | 6121774..6121943 | 593..762 | 100 | -> | Minus |
arm_2L | 6122005..6122190 | 407..592 | 100 | -> | Minus |
arm_2L | 6122264..6122410 | 260..406 | 100 | -> | Minus |
arm_2L | 6122698..6122853 | 104..259 | 100 | -> | Minus |
arm_2L | 6122978..6123064 | 17..103 | 100 | | Minus |
BS15858.5prime Sequence
804 bp (728 high quality bases) assembled on 2007-04-17
> BS15858.5prime
GAAGTTATCAGTCGACATGGTGAACAACACTGTTGATACTGAAGCCACAG
AGATTCGCTGCCAGGAGAAGTCCCGCGGGGGATTGAGCTATGAGGTCATC
CTGGCCGAACCGGCACCCAATGTGGCCGTTCCAAAACGACCGGTCACCCC
TGGCAAGAACGTTAGCGTCGAGGAGATTGAGCAGAAACTTAAGGCGGCCG
AGGAACGTCGCATTTCTCTAGAAGCCAAGAAGATGGCTGACATCTCCACT
AAGCTGGCTAAAGTCGAGGAGGCGACTCGCAAAAAGGATGAGATCACCAA
TGAGTTTATTACTCAGACCAAGGAGCAGCTGGAGTCGAAAATGGAGCTGC
ATGTGGAGAAGCGAGAGGCCATCATCAGTGACATGAAGGAGAAGCTAAAG
ATCCATGCCCAGGATATCGAAAAGACGCGTGAGACTCTTGAGCAGCAGAA
GGCCAACGAGCAGAAGGCAATCGAGGAAAAGTTGAAGATTGCTCAGTCTC
TTCGCGATGAGAATATCAAGAAAATGTTGGATCGCCTAAAGGAGCATAAC
ACAATCAAAATTGCCGAAATCAAATCGCAGAACGATCAATTGGAATGTCA
AAAGATCGAGGAGAAAGCGCGCATTTATGAGAACAAATTGTTCGCCGCCG
AGCAGAAACGCGAAAAGGAATTGCAAAAAAAAATTGAAAAAGTTCAAAAA
CTCGAACGTCGCGCTGAGCTCGTGCGCCAGAACAAGGCCCAGGCCCAGGA
TTTGGATGGTCAGCAGAGCGCCATTGCCTCCTCANGCTAAAAGCTTTCTA
GACC
BS15858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31641-PC | 774 | stai-RC | 1..774 | 17..790 | 3851 | 99.8 | Plus |
CG31641-PB | 909 | stai-RB | 164..909 | 45..790 | 3711 | 99.8 | Plus |
CG31641-PA | 753 | stai-RA | 164..666 | 45..547 | 2515 | 100 | Plus |
CG31641-PA | 753 | stai-RA | 667..753 | 704..790 | 416 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-RC | 1859 | CG31641-RC | 251..1024 | 17..790 | 3859 | 99.9 | Plus |
stai-RD | 2872 | CG31641-RD | 537..1283 | 44..790 | 3724 | 99.9 | Plus |
stai-RE | 2395 | CG31641-RE | 815..1560 | 45..790 | 3719 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6122005..6122190 | 215..400 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6121772..6121943 | 43..214 | 860 | 100 | Plus |
2L | 23513712 | 2L | 6122698..6122859 | 548..709 | 795 | 99.4 | Plus |
2L | 23513712 | 2L | 6122260..6122410 | 397..547 | 755 | 100 | Plus |
2L | 23513712 | 2L | 6122978..6123064 | 704..790 | 424 | 98.9 | Plus |
Blast to na_te.dros performed 2015-02-10 23:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 368..452 | 110 | 58.8 | Plus |
BS15858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:42 Download gff for
BS15858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31641-PC | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:18 Download gff for
BS15858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1024 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:50:10 Download gff for
BS15858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stai-RC | 251..1024 | 17..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:50:10 Download gff for
BS15858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
2L | 6122978..6123064 | 704..790 | 98 | | Plus |
2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:18 Download gff for
BS15858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6122978..6123064 | 704..790 | 98 | | Plus |
arm_2L | 6101771..6101798 | 17..44 | 100 | -> | Plus |
arm_2L | 6121774..6121943 | 45..214 | 100 | -> | Plus |
arm_2L | 6122005..6122190 | 215..400 | 100 | -> | Plus |
arm_2L | 6122264..6122410 | 401..547 | 100 | -> | Plus |
arm_2L | 6122698..6122853 | 548..703 | 100 | -> | Plus |
BS15858.pep Sequence
Translation from 16 to 789
> BS15858.pep
MVNNTVDTEATEIRCQEKSRGGLSYEVILAEPAPNVAVPKRPVTPGKNVS
VEEIEQKLKAAEERRISLEAKKMADISTKLAKVEEATRKKDEITNEFITQ
TKEQLESKMELHVEKREAIISDMKEKLKIHAQDIEKTRETLEQQKANEQK
AIEEKLKIAQSLRDENIKKMLDRLKEHNTIKIAEIKSQNDQLECQKIEEK
ARIYENKLFAAEQKREKELQKKIEKVQKLERRAELVRQNKAQAQDLDGQQ
SAIASSG*
BS15858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stai-PC | 257 | CG31641-PC | 1..257 | 1..257 | 1256 | 100 | Plus |
stai-PD | 381 | CG31641-PD | 134..381 | 10..257 | 1210 | 100 | Plus |
stai-PE | 302 | CG31641-PE | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PB | 302 | CG31641-PB | 56..302 | 11..257 | 1206 | 100 | Plus |
stai-PA | 250 | CG31641-PA | 56..250 | 11..257 | 850 | 76.5 | Plus |