Clone BS15860 Report

Search the DGRC for BS15860

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG12207-RA
Protein status:BS15860.pep: full length peptide match
Sequenced Size:1064

Clone Sequence Records

BS15860.3prime Sequence

856 bp (723 high quality bases) assembled on 2007-04-16

> BS15860.3prime
ATGGTCTAGAAAGCTTCTACCATTCAGAGAAGTCGTCCTGCTGCTTCTCC
AGCCGCTTCAGCGAATTCTGGACTCGTCGCGTCTGCGTCGTGTTCAGCAG
GTGCGCCGTATCCGAGGAGTTCCCGCTGCCCGTCGAGCTGTGGCGCTGAT
ACTGTGACGGACGGTCGTTGTTGTTGGTCTTGTAGGAGTTGTTCAGCGGA
TGGCGGCGCTGCGGGAAAACGTCGGCGGTGGCACTGATGCAGATGTCCGC
ATCACTCTGACTGCTGACCAGGTCCTTAGAGCGCTCCACATATTTGCGCG
ACTCAGAAATGGTGTTGTCTATCTTGTTAAGGAAGTCGTTCATGCATTTC
CTGTTCTCCTCCTCGGGCGTCATTGCGGCCACCGAGTCCAGGCTCTTGCT
CTGCTTGCCGCTGCAACCACCGTGGCCGTGCATCATCGATGGATCCTCGT
CGCCGGCCTGCACCACCAGCAGCTCCCCGGCAATGGAGTAGGGACGTTGT
GGGGGCTGTTGCTGCTGCTGCTGTTGGTTGCCGCCGGAACGCGATCCTCC
GGAAATGGGGCCGGTGCCACTTGTGTTGCAGCTGCTGCTGCTCCCACTGC
TGCTGCTGCTACTGCTGCTGCTGATGTCGTTGCTCTTCATGAAGCTCTTG
TTGCTCTGGCTCAGATTATTGGCATTGTTGTGCGCCTCCCGCTGTCCATT
GGCATCCGGAGTGCCCGGTGGCGTGGCCAGCACGGCGTCGAAAGCGGCTA
TCGAATCGCCAGGCACCTGGGGATAGTACGGTGAGTTCTTCTCCACTGGA
ACGAGGAGAAACTGACGCAGGAACAGGCTGTCCGAGGCGAAAAGGCGGTG
GGCCCG

BS15860.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PB 1101 CG12207-RB 262..1090 856..28 4070 99.6 Minus
CG12207-PC 1101 CG12207-RC 262..1090 856..28 4070 99.6 Minus
CG12207-PA 1032 CG12207-RA 193..1021 856..28 4070 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 903..1742 856..17 4110 99.3 Minus
CG12207-RF 2113 CG12207-RF 481..1320 856..17 4110 99.3 Minus
CG12207-RE 1927 CG12207-RE 295..1134 856..17 4110 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300435..14301018 856..273 2890 99.7 Minus
3R 32079331 3R 14301228..14301483 272..17 1220 98.4 Minus
Blast to na_te.dros performed 2015-02-12 10:09:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 661..496 319 68.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 659..496 275 66.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 681..514 220 61.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 639..484 216 63.7 Minus
roo 9092 roo DM_ROO 9092bp 1062..1157 592..493 165 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 611..496 161 64.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 646..496 149 58.2 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 662..496 146 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 695..493 138 56.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 591..496 130 64.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 536..496 120 79.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 536..496 120 79.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2842 582..489 115 59.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 533..493 111 76.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 528..496 111 81.8 Minus

BS15860.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:42 Download gff for BS15860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-PA 193..1032 17..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:42:19 Download gff for BS15860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RD 426..1265 17..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:16 Download gff for BS15860.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RE 295..1134 17..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:16 Download gff for BS15860.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14301228..14301483 17..272 98   Minus
3R 14300435..14301018 273..856 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:42:19 Download gff for BS15860.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10126157..10126740 273..856 99 -> Minus
arm_3R 10126950..10127205 17..272 98   Minus

BS15860.5prime Sequence

882 bp (741 high quality bases) assembled on 2007-04-17

> BS15860.5prime
GAAGTTATCAGTCGACATGGATGACTCGGAATTCATGTTCAACGAGAAGC
AATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAGCACCTGC
TGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCGTCGAGAA
GACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACGACGGAGC
AAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTTCCTGCGT
CAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATCCCCAGGT
GCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACGCCACCGG
GCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGCCAATAAT
CTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCAGCAGCAG
CAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACAAGTGGCA
CCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACAGCAGCAG
CAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGCTGCTGGT
GGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCACGGTGGTT
GCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAATGACGCCC
GAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGATAGACAA
CACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGACCTGGTCA
GCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGACGTTTTC
CCGCAGCGCCGCCATCCGCTGAACAACTCCTA

BS15860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PB 1101 CG12207-RB 66..935 13..882 4350 100 Plus
CG12207-PC 1101 CG12207-RC 66..935 13..882 4350 100 Plus
CG12207-PA 1032 CG12207-RA 1..866 17..882 4330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 707..1576 13..882 4350 100 Plus
CG12207-RF 2113 CG12207-RF 285..1154 13..882 4350 100 Plus
CG12207-RE 1927 CG12207-RE 99..968 13..882 4350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300419..14301018 193..792 3000 100 Plus
3R 32079331 3R 14298807..14298987 13..193 905 100 Plus
3R 32079331 3R 14301228..14301317 793..882 450 100 Plus
Blast to na_te.dros performed 2015-02-13 01:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 404..569 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 406..569 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 384..551 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 426..581 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 473..572 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 454..569 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 419..569 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 403..569 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 370..572 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 474..569 130 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 529..569 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 529..569 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2842 483..576 115 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 532..572 111 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 537..569 111 81.8 Plus

BS15860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:43 Download gff for BS15860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-PC 62..934 8..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:56 Download gff for BS15860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RD 226..1098 8..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:58 Download gff for BS15860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12207-RE 95..967 8..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:58 Download gff for BS15860.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14298803..14298987 8..193 98 -> Plus
3R 14300420..14301018 194..792 100 -> Plus
3R 14301228..14301316 793..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:56 Download gff for BS15860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10124525..10124709 8..193 98 -> Plus
arm_3R 10126142..10126740 194..792 100 -> Plus
arm_3R 10126950..10127038 793..881 100   Plus

BS15860.complete Sequence

1064 bp assembled on 2009-08-24

GenBank Submission: KX803476

> BS15860.complete
GAAGTTATCAGTCGACATGGATGACTCGGAATTCATGTTCAACGAGAAGC
AATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAGCACCTGC
TGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCGTCGAGAA
GACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACGACGGAGC
AAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTTCCTGCGT
CAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATCCCCAGGT
GCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACGCCACCGG
GCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGCCAATAAT
CTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCAGCAGCAG
CAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACAAGTGGCA
CCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACAGCAGCAG
CAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGCTGCTGGT
GGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCACGGTGGTT
GCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAATGACGCCC
GAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGATAGACAA
CACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGACCTGGTCA
GCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGACGTTTTC
CCGCAGCGCCGCCATCCGCTGAACAACTCCTACAAGACCAACAACAACGA
CCGTCCGTCACAGTATCAGCGCCACAGCTCGACGGGCAGCGGGAACTCCT
CGGATACGGCGCACCTGCTGAACACGACGCAGACGCGACGAGTCCAGAAT
TCGCTGAAGCGGCTGGAGAAGCAGCAGGACGACTTCTTTGAGTTGTAGAA
GCTTTCTAGACCAT

BS15860.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 1101 CG12207-PG 66..1101 13..1048 5165 99.9 Plus
CG12207-RF 1101 CG12207-PF 66..1101 13..1048 5165 99.9 Plus
CG12207-RC 1101 CG12207-PC 66..1101 13..1048 5165 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 707..1742 13..1048 5165 99.9 Plus
CG12207-RF 2113 CG12207-RF 285..1320 13..1048 5165 99.9 Plus
CG12207-RE 1927 CG12207-RE 99..1134 13..1048 5165 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300419..14301018 193..792 3000 100 Plus
3R 32079331 3R 14301228..14301483 793..1048 1265 99.6 Plus
3R 32079331 3R 14298807..14298987 13..193 905 100 Plus
Blast to na_te.dros performed 2014-11-28 01:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 404..569 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 406..569 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 384..551 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 426..581 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 473..572 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 454..569 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 419..569 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 403..569 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 370..572 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 474..569 130 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 529..569 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 529..569 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 532..572 111 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 537..569 111 81.8 Plus

BS15860.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:34 Download gff for BS15860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 329..1360 17..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:10 Download gff for BS15860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RD 234..1265 17..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:42 Download gff for BS15860.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RE 103..1134 17..1048 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:42 Download gff for BS15860.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14298811..14298987 17..193 100 -> Plus
3R 14300420..14301018 194..792 100 -> Plus
3R 14301228..14301483 793..1048 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:10 Download gff for BS15860.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10124533..10124709 17..193 100 -> Plus
arm_3R 10126142..10126740 194..792 100 -> Plus
arm_3R 10126950..10127205 793..1048 99   Plus

BS15860.pep Sequence

Translation from 16 to 1047

> BS15860.pep
MDDSEFMFNEKQSIRDSGRTLKRYGSTCCNSLRNNETLIRHIVEKTDTLQ
GIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPVEKNSPYYPQVPGDSI
AAFDAVLATPPGTPDANGQREAHNNANNLSQSNKSFMKSNDISSSSSSSS
SGSSSSCNTSGTGPISGGSRSGGNQQQQQQQPPQRPYSIAGELLVVQAGD
EDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISES
RKYVERSKDLVSSQSDADICISATADVFPQRRHPLNNSYKTNNNDRPSQY
QRHSSTGSGNSSDTAHLLNTTQTRRVQNSLKRLEKQQDDFFEL*

BS15860.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PE 343 CG12207-PE 1..343 1..343 1777 100 Plus
CG12207-PD 343 CG12207-PD 1..343 1..343 1777 100 Plus
CG12207-PA 343 CG12207-PA 1..343 1..343 1777 100 Plus
CG12207-PG 366 CG12207-PG 24..366 1..343 1777 100 Plus
CG12207-PF 366 CG12207-PF 24..366 1..343 1777 100 Plus