Clone Sequence Records
BS15860.3prime Sequence
856 bp (723 high quality bases) assembled on 2007-04-16
> BS15860.3prime
ATGGTCTAGAAAGCTTCTACCATTCAGAGAAGTCGTCCTGCTGCTTCTCC
AGCCGCTTCAGCGAATTCTGGACTCGTCGCGTCTGCGTCGTGTTCAGCAG
GTGCGCCGTATCCGAGGAGTTCCCGCTGCCCGTCGAGCTGTGGCGCTGAT
ACTGTGACGGACGGTCGTTGTTGTTGGTCTTGTAGGAGTTGTTCAGCGGA
TGGCGGCGCTGCGGGAAAACGTCGGCGGTGGCACTGATGCAGATGTCCGC
ATCACTCTGACTGCTGACCAGGTCCTTAGAGCGCTCCACATATTTGCGCG
ACTCAGAAATGGTGTTGTCTATCTTGTTAAGGAAGTCGTTCATGCATTTC
CTGTTCTCCTCCTCGGGCGTCATTGCGGCCACCGAGTCCAGGCTCTTGCT
CTGCTTGCCGCTGCAACCACCGTGGCCGTGCATCATCGATGGATCCTCGT
CGCCGGCCTGCACCACCAGCAGCTCCCCGGCAATGGAGTAGGGACGTTGT
GGGGGCTGTTGCTGCTGCTGCTGTTGGTTGCCGCCGGAACGCGATCCTCC
GGAAATGGGGCCGGTGCCACTTGTGTTGCAGCTGCTGCTGCTCCCACTGC
TGCTGCTGCTACTGCTGCTGCTGATGTCGTTGCTCTTCATGAAGCTCTTG
TTGCTCTGGCTCAGATTATTGGCATTGTTGTGCGCCTCCCGCTGTCCATT
GGCATCCGGAGTGCCCGGTGGCGTGGCCAGCACGGCGTCGAAAGCGGCTA
TCGAATCGCCAGGCACCTGGGGATAGTACGGTGAGTTCTTCTCCACTGGA
ACGAGGAGAAACTGACGCAGGAACAGGCTGTCCGAGGCGAAAAGGCGGTG
GGCCCG
BS15860.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-PB | 1101 | CG12207-RB | 262..1090 | 856..28 | 4070 | 99.6 | Minus |
CG12207-PC | 1101 | CG12207-RC | 262..1090 | 856..28 | 4070 | 99.6 | Minus |
CG12207-PA | 1032 | CG12207-RA | 193..1021 | 856..28 | 4070 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-RG | 2535 | CG12207-RG | 903..1742 | 856..17 | 4110 | 99.3 | Minus |
CG12207-RF | 2113 | CG12207-RF | 481..1320 | 856..17 | 4110 | 99.3 | Minus |
CG12207-RE | 1927 | CG12207-RE | 295..1134 | 856..17 | 4110 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14300435..14301018 | 856..273 | 2890 | 99.7 | Minus |
3R | 32079331 | 3R | 14301228..14301483 | 272..17 | 1220 | 98.4 | Minus |
Blast to na_te.dros performed 2015-02-12 10:09:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 661..496 | 319 | 68.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6893 | 659..496 | 275 | 66.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6956 | 681..514 | 220 | 61.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2449 | 639..484 | 216 | 63.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1157 | 592..493 | 165 | 67 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6824 | 611..496 | 161 | 64.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..6563 | 646..496 | 149 | 58.2 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 849..1005 | 662..496 | 146 | 58.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2661 | 695..493 | 138 | 56.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 591..496 | 130 | 64.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 536..496 | 120 | 79.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6800 | 536..496 | 120 | 79.1 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2842 | 582..489 | 115 | 59.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2376 | 533..493 | 111 | 76.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6758 | 528..496 | 111 | 81.8 | Minus |
BS15860.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:42 Download gff for
BS15860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-PA | 193..1032 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:42:19 Download gff for
BS15860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RD | 426..1265 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:10:16 Download gff for
BS15860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RE | 295..1134 | 17..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:10:16 Download gff for
BS15860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14301228..14301483 | 17..272 | 98 | | Minus |
3R | 14300435..14301018 | 273..856 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:42:19 Download gff for
BS15860.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10126157..10126740 | 273..856 | 99 | -> | Minus |
arm_3R | 10126950..10127205 | 17..272 | 98 | | Minus |
BS15860.5prime Sequence
882 bp (741 high quality bases) assembled on 2007-04-17
> BS15860.5prime
GAAGTTATCAGTCGACATGGATGACTCGGAATTCATGTTCAACGAGAAGC
AATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAGCACCTGC
TGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCGTCGAGAA
GACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACGACGGAGC
AAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTTCCTGCGT
CAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATCCCCAGGT
GCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACGCCACCGG
GCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGCCAATAAT
CTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCAGCAGCAG
CAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACAAGTGGCA
CCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACAGCAGCAG
CAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGCTGCTGGT
GGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCACGGTGGTT
GCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAATGACGCCC
GAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGATAGACAA
CACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGACCTGGTCA
GCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGACGTTTTC
CCGCAGCGCCGCCATCCGCTGAACAACTCCTA
BS15860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-PB | 1101 | CG12207-RB | 66..935 | 13..882 | 4350 | 100 | Plus |
CG12207-PC | 1101 | CG12207-RC | 66..935 | 13..882 | 4350 | 100 | Plus |
CG12207-PA | 1032 | CG12207-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-RG | 2535 | CG12207-RG | 707..1576 | 13..882 | 4350 | 100 | Plus |
CG12207-RF | 2113 | CG12207-RF | 285..1154 | 13..882 | 4350 | 100 | Plus |
CG12207-RE | 1927 | CG12207-RE | 99..968 | 13..882 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14300419..14301018 | 193..792 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 14298807..14298987 | 13..193 | 905 | 100 | Plus |
3R | 32079331 | 3R | 14301228..14301317 | 793..882 | 450 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 01:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 404..569 | 319 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6893 | 406..569 | 275 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6956 | 384..551 | 220 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2449 | 426..581 | 216 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1157 | 473..572 | 165 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6824 | 454..569 | 161 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..6563 | 419..569 | 149 | 58.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 849..1005 | 403..569 | 146 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2661 | 370..572 | 138 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 474..569 | 130 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 529..569 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6800 | 529..569 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2842 | 483..576 | 115 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2376 | 532..572 | 111 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6758 | 537..569 | 111 | 81.8 | Plus |
BS15860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:43 Download gff for
BS15860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-PC | 62..934 | 8..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:56 Download gff for
BS15860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RD | 226..1098 | 8..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:21:58 Download gff for
BS15860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RE | 95..967 | 8..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:21:58 Download gff for
BS15860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14298803..14298987 | 8..193 | 98 | -> | Plus |
3R | 14300420..14301018 | 194..792 | 100 | -> | Plus |
3R | 14301228..14301316 | 793..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:56 Download gff for
BS15860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10124525..10124709 | 8..193 | 98 | -> | Plus |
arm_3R | 10126142..10126740 | 194..792 | 100 | -> | Plus |
arm_3R | 10126950..10127038 | 793..881 | 100 | | Plus |
BS15860.complete Sequence
1064 bp assembled on 2009-08-24
GenBank Submission: KX803476
> BS15860.complete
GAAGTTATCAGTCGACATGGATGACTCGGAATTCATGTTCAACGAGAAGC
AATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAGCACCTGC
TGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCGTCGAGAA
GACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACGACGGAGC
AAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTTCCTGCGT
CAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATCCCCAGGT
GCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACGCCACCGG
GCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGCCAATAAT
CTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCAGCAGCAG
CAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACAAGTGGCA
CCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACAGCAGCAG
CAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGCTGCTGGT
GGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCACGGTGGTT
GCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAATGACGCCC
GAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGATAGACAA
CACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGACCTGGTCA
GCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGACGTTTTC
CCGCAGCGCCGCCATCCGCTGAACAACTCCTACAAGACCAACAACAACGA
CCGTCCGTCACAGTATCAGCGCCACAGCTCGACGGGCAGCGGGAACTCCT
CGGATACGGCGCACCTGCTGAACACGACGCAGACGCGACGAGTCCAGAAT
TCGCTGAAGCGGCTGGAGAAGCAGCAGGACGACTTCTTTGAGTTGTAGAA
GCTTTCTAGACCAT
BS15860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-RG | 1101 | CG12207-PG | 66..1101 | 13..1048 | 5165 | 99.9 | Plus |
CG12207-RF | 1101 | CG12207-PF | 66..1101 | 13..1048 | 5165 | 99.9 | Plus |
CG12207-RC | 1101 | CG12207-PC | 66..1101 | 13..1048 | 5165 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-RG | 2535 | CG12207-RG | 707..1742 | 13..1048 | 5165 | 99.9 | Plus |
CG12207-RF | 2113 | CG12207-RF | 285..1320 | 13..1048 | 5165 | 99.9 | Plus |
CG12207-RE | 1927 | CG12207-RE | 99..1134 | 13..1048 | 5165 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14300419..14301018 | 193..792 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 14301228..14301483 | 793..1048 | 1265 | 99.6 | Plus |
3R | 32079331 | 3R | 14298807..14298987 | 13..193 | 905 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 404..569 | 319 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6893 | 406..569 | 275 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6956 | 384..551 | 220 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2449 | 426..581 | 216 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1157 | 473..572 | 165 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6824 | 454..569 | 161 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..6563 | 419..569 | 149 | 58.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 849..1005 | 403..569 | 146 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2661 | 370..572 | 138 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 474..569 | 130 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 529..569 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6800 | 529..569 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2376 | 532..572 | 111 | 76.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6758 | 537..569 | 111 | 81.8 | Plus |
BS15860.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:34 Download gff for
BS15860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RA | 329..1360 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:10 Download gff for
BS15860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RD | 234..1265 | 17..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:50:42 Download gff for
BS15860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12207-RE | 103..1134 | 17..1048 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:50:42 Download gff for
BS15860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14298811..14298987 | 17..193 | 100 | -> | Plus |
3R | 14300420..14301018 | 194..792 | 100 | -> | Plus |
3R | 14301228..14301483 | 793..1048 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:10 Download gff for
BS15860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10124533..10124709 | 17..193 | 100 | -> | Plus |
arm_3R | 10126142..10126740 | 194..792 | 100 | -> | Plus |
arm_3R | 10126950..10127205 | 793..1048 | 99 | | Plus |
BS15860.pep Sequence
Translation from 16 to 1047
> BS15860.pep
MDDSEFMFNEKQSIRDSGRTLKRYGSTCCNSLRNNETLIRHIVEKTDTLQ
GIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPVEKNSPYYPQVPGDSI
AAFDAVLATPPGTPDANGQREAHNNANNLSQSNKSFMKSNDISSSSSSSS
SGSSSSCNTSGTGPISGGSRSGGNQQQQQQQPPQRPYSIAGELLVVQAGD
EDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISES
RKYVERSKDLVSSQSDADICISATADVFPQRRHPLNNSYKTNNNDRPSQY
QRHSSTGSGNSSDTAHLLNTTQTRRVQNSLKRLEKQQDDFFEL*
BS15860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12207-PE | 343 | CG12207-PE | 1..343 | 1..343 | 1777 | 100 | Plus |
CG12207-PD | 343 | CG12207-PD | 1..343 | 1..343 | 1777 | 100 | Plus |
CG12207-PA | 343 | CG12207-PA | 1..343 | 1..343 | 1777 | 100 | Plus |
CG12207-PG | 366 | CG12207-PG | 24..366 | 1..343 | 1777 | 100 | Plus |
CG12207-PF | 366 | CG12207-PF | 24..366 | 1..343 | 1777 | 100 | Plus |