Clone Sequence Records
BS15864.3prime Sequence
895 bp (732 high quality bases) assembled on 2007-04-16
> BS15864.3prime
ATGGTCTAGAAAGCTTTTAAATGTAGCTAGCAATGCAGAGGGAGGCATTG
GTTCCTCCAAAGCCGAAGGAATTCTTGAGGGCAACACGCCGCTTTTGGTC
CGCCGACCAATCAGTAGCTTTCGTGACCACATTGACGTCCACATCGAGGT
GCTCAATGTTGATGGAGGGCGGCAGCTTGTTATTCGCGCAGGCGAGCACC
ACAAAGAGCGCTTCCAGGTTGCCAGAGGAGCCCAGCAGGTGGCCATGTGC
TCCCTTGGTGGAGGAGACCCTCACCTGCGGAGTGTGCGCCCCGAAAACAC
GACCTATAGCGTGTGACTCAATGCGATCCCCGGTGGGCGTGGAGGTTGCG
TGGGCATTTACATACGTAACATCCTCTGGTGCAATCCCAGCATCTTGTAT
GGCCCGCTTCATGGCAAGAGTGGCTCCGGCGCCGTCATCGCTGGGCGACG
TTATGTGATAGGCATCGCCGGACAAGCCGTAGCCCAGAATCTCAGCTAGA
ATGGGAGCTCCCCGAGCGCGGGCGTGCTCCAGTTCTTCCAGCAAGAGCAC
AGCTGCGCCCTCGCCCATCACGAAGCCATCCCGGGACTTGTCAAACGGTC
TGGACGCAACCGCCGGATTATCGTTGAATGCGGTGCTCAGAGCCCGCAGT
CTGCAAAATCCAGCGATGGAGAGCGGATCTATGCAGGCCTCACCACTCCC
CGCCAGCATCAAGTCGGCATCTCCGCTGCGAATGAAGCGCATGGCATCGC
CCAGGGCATGGGCACCTGTGGCGCANGCCGTGGACACCGAGTGGTTAGGT
CCTCTTAAGCCATGTCGCATGCTTATGTGACCACACGCCATACTGGGCAG
CAGCCTGGGCACGAAAAAGGGGCTTACTCTGTTGTTACCTCGTTG
BS15864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-PA | 1317 | CG12170-RA | 439..1317 | 895..17 | 4351 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-RA | 1424 | CG12170-RA | 471..1349 | 895..17 | 4369 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5637704..5638582 | 895..17 | 4369 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:37:07 has no hits.
BS15864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:45 Download gff for
BS15864.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-PA | 439..1317 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:57 Download gff for
BS15864.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 471..1352 | 14..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:43:56 Download gff for
BS15864.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 471..1352 | 14..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:43:56 Download gff for
BS15864.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5637704..5638585 | 14..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:57 Download gff for
BS15864.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1463426..1464307 | 14..895 | 99 | | Minus |
BS15864.5prime Sequence
864 bp (826 high quality bases) assembled on 2007-04-17
> BS15864.5prime
GAAGTTATCAGTCGACATGCGAGTTTTAGGAAAGTGCACTGTTTTGGTCA
GGCAAACCCGCAGCTTATCCACGCCATCTGGGCGCCGCAGAGTGGTGGTC
ACGGGAAGTGGCGCAGTCACTCCGCTGGGCAACAATGGACCGGATTCTTG
GCGACGCATCCTGGCCGGCGAGTCGGCAATTTCTCGGCTGAGTGCGGAGT
TTAAGGGCTTGCCCTGCCAGGTTGCGGCTCAAATCCCGAGGGAAAACCTA
CAGCTGGATCAACACCTGACCAAGTCGGACATTAAGCTGATGAGCCCCGC
CACGCAGCTTGCCGTATTGGCGGCTGAGGAGGCCTTGTCAACCGGAAAGC
TGTGCCCCAAGCAATTGAGCGAGGAGGAGCTTGAGCGGTTCGGAGTGTGC
GTGGGCATGGGCATGTTCGACCTTGCAGAGGTCTATGGCGCCTGGAACCA
GCTGCAACGAGGTTACAACAGAGTAAGCCCCTTTTTCGTGCCCAGGCTGC
TGCCCAGTATGGCGTGTGGTCACATAAGCATGCGACATGGCTTAAGAGGA
CCTAACCACTCGGTGTCCACGGCCTGCGCCACAGGTGCCCATGCCCTGGG
CGATGCCATGCGCTTCATTCGCAGCGGAGATGCCGACTTGATGCTGGCGG
GGAGTGGTGAGGCCTGCATAGATCCGCTCTCCATCGCTGGATTTTGCAGA
CTGCGGGCTCTGAGCACCGCATTCAACGATAATCCGGCGGTTGCGTCCAG
ACCGTTTGACAAGTCCCGGGATGGCTTCGTGATGGGCGAGGGCGCAGCTG
TGCTCTTGCTGGAAGAACTGGAGCACGCCCGCGCTCGGGGAGCTCCATTC
TAGCTGAAATCTGG
BS15864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-PA | 1317 | CG12170-RA | 1..842 | 17..857 | 4170 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-RA | 1424 | CG12170-RA | 29..874 | 13..857 | 4190 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5637262..5638107 | 13..857 | 4165 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:37:12 has no hits.
BS15864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:46 Download gff for
BS15864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-PA | 1..850 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:10:58 Download gff for
BS15864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 29..882 | 13..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:44:22 Download gff for
BS15864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 29..882 | 13..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:44:22 Download gff for
BS15864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5637262..5638103 | 13..853 | 99 | -- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:10:58 Download gff for
BS15864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1462984..1463825 | 13..853 | 99 | -- | Plus |
BS15864.complete Sequence
1349 bp assembled on 2007-05-07
GenBank Submission: FJ637975
> BS15864.complete
GAAGTTATCAGTCGACATGCGAGTTTTAGGAAAGTGCACTGTTTTGGTCA
GGCAAACCCGCAGCTTATCCACGCCATCTGGGCGCCGCAGAGTGGTGGTC
ACGGGAAGTGGCGCAGTCACTCCGCTGGGCAACAATGGACCGGATTCTTG
GCGACGCATCCTGGCCGGCGAGTCGGCAATTTCTCGGCTGAGTGCGGAGT
TTAAGGGCTTGCCCTGCCAGGTTGCGGCTCAAATCCCGAGGGAAAACCTA
CAGCTGGATCAACACCTGACCAAGTCGGACATTAAGCTGATGAGCCCCGC
CACGCAGCTTGCCGTATTGGCGGCTGAGGAGGCCTTGTCAACCGGAAAGC
TGTGCCCCAAGCAATTGAGCGAGGAGGAGCTTGAGCGGTTCGGAGTGTGC
GTGGGCATGGGCATGTTCGACCTTGCAGAGGTCTATGGCGCCTGGAACCA
GCTGCAACGAGGTTACAACAGAGTAAGCCCCTTTTTCGTGCCCAGGCTGC
TGCCCAGTATGGCGTGTGGTCACATAAGCATGCGACATGGCTTAAGAGGA
CCTAACCACTCGGTGTCCACGGCCTGCGCCACAGGTGCCCATGCCCTGGG
CGATGCCATGCGCTTCATTCGCAGCGGAGATGCCGACTTGATGCTGGCGG
GGAGTGGTGAGGCCTGCATAGATCCGCTCTCCATCGCTGGATTTTGCAGA
CTGCGGGCTCTGAGCACCGCATTCAACGATAATCCGGCGGTTGCGTCCAG
ACCGTTTGACAAGTCCCGGGATGGCTTCGTGATGGGCGAGGGCGCAGCTG
TGCTCTTGCTGGAAGAACTGGAGCACGCCCGCGCTCGGGGAGCTCCCATT
CTAGCTGAGATTCTGGGCTACGGCTTGTCCGGCGATGCCTATCACATAAC
GTCGCCCAGCGATGACGGCGCCGGAGCCACTCTTGCCATGAAGCGGGCCA
TACAAGATGCTGGGATTGCACCAGAGGATGTTACGTATGTAAATGCCCAC
GCAACCTCCACGCCCACCGGGGATCGCATTGAGTCACACGCTATAGGTCG
TGTTTTCGGGGCGCACACTCCGCAGGTGAGGGTCTCCTCCACCAAGGGAG
CACATGGCCACCTGCTGGGCTCCTCTGGCAACCTGGAAGCGCTCTTTGTG
GTGCTCGCCTGCGCGAATAACAAGCTGCCGCCCTCCATCAACATTGAGCA
CCTCGATGTGGACGTCAATGTGGTCACGAAAGCTACTGATTGGTCGGCGG
ACCAAAAGCGGCGTGTTGCCCTCAAGAATTCCTTCGGCTTTGGAGGAACC
AATGCCTCCCTCTGCATTGCTAGCTACATTTAAAAGCTTTCTAGACCAT
BS15864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-RA | 1317 | CG12170-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-RA | 1424 | CG12170-RA | 29..1349 | 13..1333 | 6590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5637262..5638582 | 13..1333 | 6590 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:42:59 has no hits.
BS15864.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:05 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:11 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 26..1349 | 13..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:23 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 33..1347 | 17..1331 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:05 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 26..1349 | 13..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:55 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12170-RA | 33..1347 | 17..1331 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:55 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5637266..5638580 | 17..1331 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:23 Download gff for
BS15864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1462988..1464302 | 17..1331 | 100 | | Plus |
BS15864.pep Sequence
Translation from 16 to 1332
> BS15864.pep
MRVLGKCTVLVRQTRSLSTPSGRRRVVVTGSGAVTPLGNNGPDSWRRILA
GESAISRLSAEFKGLPCQVAAQIPRENLQLDQHLTKSDIKLMSPATQLAV
LAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYGAWNQLQRGY
NRVSPFFVPRLLPSMACGHISMRHGLRGPNHSVSTACATGAHALGDAMRF
IRSGDADLMLAGSGEACIDPLSIAGFCRLRALSTAFNDNPAVASRPFDKS
RDGFVMGEGAAVLLLEELEHARARGAPILAEILGYGLSGDAYHITSPSDD
GAGATLAMKRAIQDAGIAPEDVTYVNAHATSTPTGDRIESHAIGRVFGAH
TPQVRVSSTKGAHGHLLGSSGNLEALFVVLACANNKLPPSINIEHLDVDV
NVVTKATDWSADQKRRVALKNSFGFGGTNASLCIASYI*
BS15864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12170-PA | 438 | CG12170-PA | 1..438 | 1..438 | 2251 | 100 | Plus |
| CG3523-PA | 2438 | CG3523-PA | 82..444 | 64..436 | 266 | 25.8 | Plus |
| CG3523-PC | 2540 | CG3523-PC | 184..546 | 64..436 | 266 | 25.8 | Plus |
| CG17374-PC | 2394 | CG17374-PC | 92..424 | 92..437 | 254 | 27.7 | Plus |
| v(2)k05816-PA | 2409 | CG3524-PA | 19..426 | 26..437 | 251 | 22.7 | Plus |
