Clone Sequence Records
BS15866.complete Sequence
1100 bp assembled on 2010-02-09
GenBank Submission: KX805158
> BS15866.complete
GAAGTTATCAGTCGACATGACCACGAACAGCAGCTTCTTCGATGAACACA
TCGCCATGATATACTCCAACCTGATGGACCAGTACATGCCCGAGTACTTC
AAAAGCTTTGAGTACACGCCATGGGTTTTCTCCCTGCTGGGATCGGTGGT
AATTGGACTGAGTGGCATATTCCCGCTGATCATCATTCCCACGGAGGAGA
AAATGGCTAAGGAGGGATACAAAGATCCTGCAGATTCAAAACTCCTGCGA
GTGCTTCTGAGTTTCGCGGTCGGCGGTCTGCTGGGCGATGTGTTCCTTCA
CCTGTTGCCAGAAGCCTGGGAGGGCGATAATCAAGATCCTTCTAGTCACC
CATCCCTGCGCTCGGGCCTTTGGGTACTTTCCGGCATACTGATCTTCACG
ATCGTGGAGAAAATCTTTTCCGGATATGCCAGCGCGGACGAGGAGAACCC
TCAGCCCAAGTGCGTGGAGATAGCCAACTGCCTGTTGCGTCGACATGGCG
GCCAACTACCAGAGGGCGAAACCTCTGAGAGTTGTGGCGGCGCCTGCGAC
ATCGAAGATGTAGGTAAAGTCTGTTTCCTACGCGAGCAGGAACAGAAGTC
AAAGGAAAGGAAGGAACAGCCGAAGAAGGTGGCTGGTTATCTGAACCTCT
TGGCCAACTCAATTGACAATTTCACACACGGTCTAGCCGTGGCTGGATCC
TTTTTGGTGTCCTTCAGACACGGCATTCTAGCCACTTTTGCCATATTGCT
TCATGAAATTCCGCACGAGGTGGGGGATTTCGCAATCCTGCTTCGATCCG
GATTCAGTCGCTGGGACGCCGCGCGTGCGCAACTACTCACGGCGGGAGCT
GGCCTGCTCGGTGCTCTGGTGGCCATCGGAGGCTCCGGCGTAACGTCGGC
CATGGAGGCACGTACTTCGTGGATTATGCCGTTCACCGCCGGCGGCTTTC
TGCACATTGCTCTGGTCACAGTATTACCTGATCTCTTGAAGGAGGAGGAG
CGCAAGGAGTCCATTAAGCAGCTGCTAGCACTGGTATTTGGCATTGCGTT
AATGGCCGTGATGACCATGCTATTCGAACACTAGAAGCTTTCTAGACCAT
BS15866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip99C-RJ | 1068 | CG7816-PJ | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Zip99C-RI | 1068 | CG7816-PI | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Zip99C-RH | 1068 | CG7816-PH | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip99C-RJ | 1638 | CG7816-RJ | 314..1388 | 17..1091 | 5345 | 99.8 | Plus |
Zip99C-RI | 1709 | CG7816-RI | 385..1459 | 17..1091 | 5345 | 99.8 | Plus |
Zip99C-RH | 1476 | CG7816-RH | 152..1226 | 17..1091 | 5345 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29864413..29864829 | 749..333 | 2085 | 100 | Minus |
3R | 32079331 | 3R | 29865057..29865267 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 29863951..29864137 | 1091..905 | 905 | 98.9 | Minus |
3R | 32079331 | 3R | 29864195..29864350 | 905..750 | 780 | 100 | Minus |
3R | 32079331 | 3R | 29864889..29864996 | 335..228 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:39 has no hits.
BS15866.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:42 Download gff for
BS15866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-RD | 168..1235 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:24:49 Download gff for
BS15866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-RH | 152..1219 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:39 Download gff for
BS15866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-RD | 168..1235 | 17..1084 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:33 Download gff for
BS15866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zip99C-RH | 152..1219 | 17..1084 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:33 Download gff for
BS15866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29863958..29864136 | 906..1084 | 100 | <- | Minus |
3R | 29864195..29864350 | 750..905 | 100 | <- | Minus |
3R | 29864413..29864826 | 336..749 | 100 | <- | Minus |
3R | 29864889..29864996 | 228..335 | 100 | <- | Minus |
3R | 29865057..29865267 | 17..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:24:49 Download gff for
BS15866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25689680..25689858 | 906..1084 | 100 | <- | Minus |
arm_3R | 25689917..25690072 | 750..905 | 100 | <- | Minus |
arm_3R | 25690135..25690548 | 336..749 | 100 | <- | Minus |
arm_3R | 25690611..25690718 | 228..335 | 100 | <- | Minus |
arm_3R | 25690779..25690989 | 17..227 | 100 | | Minus |
BS15866.3prime Sequence
909 bp (717 high quality bases) assembled on 2007-04-16
> BS15866.3prime
ATGGTCTAGAAAGCTTCTAGTGTTCGAATAGCATGGTCATCACGGCCATT
AACGCAATGCCAAATACCAGTGCTAGCAGCTGCTTAATGGACTCCTTGCG
CTCCTCCTCCTTCAAGAGATCAGGTAATACTGTGACCAGAGCAATGTGCA
GAAAGCCGCCGGCGGTGAACGGCATAATCCACGAAGTACGTGCCTCCATG
GCCGACGTTACGCCGGAGCCTCCGATGGCCACCAGAGCACCGAGCAGGCC
AGCTCCCGCCGTGAGTAGTTGCGCACGCGCGGCGTCCCAGCGACTGAATC
CGGATCGAAGCAGGATTGCGAAATCCCCCACCTCGTGCGGAATTTCATGA
AGCAATATGGCAAAAGTGGCTAGAATGCCGTGTCTGAAGGACACCAAAAA
GGATCCAGCCACGGCTAGACCGTGTGTGAAATTGTCAATTGAGTTGGCCA
AGAGGTTCAGATAACCAGCCACCTTCTTCGGCTGTTCCTTCCTTTCCTTT
GACTTCTGTTCCTGCTCGCGTAGGAAACAGACTTTACCTACATCTTCGAT
GTCGCAGGCGCCGCCACAACTCTCAGAGGTTTCGCCCTCTGGTAGTTGGC
CGCCATGTCGACGCAACAGGCAGTTGGCTATCTCCACGCACTTGGGCTGA
GGGTTCTCCTCGTCCGCGCTGGCATATCCGGAAAAGATTTTCTCCACGAT
CGTGAAGATCAGTATGCCGGAAAGTACCCAAAGGCCCGAGCGCANGGATG
GGTGACTAGAAGGATCTTGATTATCGCCCTCCCAGGCTTCTGGCAACAGG
TGAAGGAACACATCGCCCAGCAGACCGCCGACCGCGAAACTCAGAAGCAC
TCGCAGGAGTTTTGAATCTGCAGGATCTTTGTATCCCTCCTTACCATTTT
CTCCTCCGT
BS15866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:52:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7816-PG | 1068 | CG7816-RG | 175..1068 | 909..17 | 4411 | 99.7 | Minus |
CG7816-PF | 1068 | CG7816-RF | 175..1068 | 909..17 | 4411 | 99.7 | Minus |
CG7816-PD | 1068 | CG7816-RD | 175..1068 | 909..17 | 4411 | 99.7 | Minus |
CG7816-PA | 1068 | CG7816-RA | 175..1068 | 909..17 | 4411 | 99.7 | Minus |
CG7816-PE | 1068 | CG7816-RE | 175..1068 | 909..17 | 4411 | 99.7 | Minus |
CG7816-PC | 1068 | CG7816-RC | 175..1068 | 909..17 | 4411 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip99C-RJ | 1638 | CG7816-RJ | 488..1388 | 909..10 | 4439 | 99.6 | Minus |
Zip99C-RI | 1709 | CG7816-RI | 559..1459 | 909..10 | 4439 | 99.6 | Minus |
Zip99C-RH | 1476 | CG7816-RH | 326..1226 | 909..10 | 4439 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29864413..29864829 | 352..768 | 2074 | 99.8 | Plus |
3R | 32079331 | 3R | 29863951..29864137 | 10..196 | 905 | 98.9 | Plus |
3R | 32079331 | 3R | 29864195..29864350 | 196..351 | 780 | 100 | Plus |
3R | 32079331 | 3R | 29864889..29864996 | 766..873 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:37:10 has no hits.
BS15866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:47 Download gff for
BS15866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-PC | 175..1068 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:12:58 Download gff for
BS15866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-RH | 326..1228 | 6..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:34 Download gff for
BS15866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zip99C-RH | 326..1228 | 6..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:34 Download gff for
BS15866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29863949..29864136 | 6..195 | 97 | <- | Plus |
3R | 29864195..29864350 | 196..351 | 100 | <- | Plus |
3R | 29864413..29864826 | 352..765 | 99 | <- | Plus |
3R | 29864889..29864996 | 766..873 | 100 | <- | Plus |
3R | 29865057..29865093 | 874..909 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:12:58 Download gff for
BS15866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25689671..25689858 | 6..195 | 97 | <- | Plus |
arm_3R | 25689917..25690072 | 196..351 | 100 | <- | Plus |
arm_3R | 25690135..25690548 | 352..765 | 99 | <- | Plus |
arm_3R | 25690611..25690718 | 766..873 | 100 | <- | Plus |
arm_3R | 25690779..25690815 | 874..909 | 97 | | Plus |
BS15866.5prime Sequence
865 bp (823 high quality bases) assembled on 2007-04-17
> BS15866.5prime
GAAGTTATCAGTCGACATGACCACGAACAGCAGCTTCTTCGATGAACACA
TCGCCATGATATACTCCAACCTGATGGACCAGTACATGCCCGAGTACTTC
AAAAGCTTTGAGTACACGCCATGGGTTTTCTCCCTGCTGGGATCGGTGGT
AATTGGACTGAGTGGCATATTCCCGCTGATCATCATTCCCACGGAGGAGA
AAATGGCTAAGGAGGGATACAAAGATCCTGCAGATTCAAAACTCCTGCGA
GTGCTTCTGAGTTTCGCGGTCGGCGGTCTGCTGGGCGATGTGTTCCTTCA
CCTGTTGCCAGAAGCCTGGGAGGGCGATAATCAAGATCCTTCTAGTCACC
CATCCCTGCGCTCGGGCCTTTGGGTACTTTCCGGCATACTGATCTTCACG
ATCGTGGAGAAAATCTTTTCCGGATATGCCAGCGCGGACGAGGAGAACCC
TCAGCCCAAGTGCGTGGAGATAGCCAACTGCCTGTTGCGTCGACATGGCG
GCCAACTACCAGAGGGCGAAACCTCTGAGAGTTGTGGCGGCGCCTGCGAC
ATCGAAGATGTAGGTAAAGTCTGTTTCCTACGCGAGCAGGAACAGAAGTC
AAAGGAAAGGAAGGAACAGCCGAAGAAGGTGGCTGGTTATCTGAACCTCT
TGGCCAACTCAATTGACAATTTCACACACGGTCTAGCCGTGGCTGGATCC
TTTTTGGTGTCCTTCAGACACGGCATTCTAGCCACTTTTGCCATATTGCT
TCATGAAATTCCGCACGAGGTGGGGGATTTCGCAATCCTGCTTCGATCCG
GATTCAGTCGCTGGGACGCCGCGCGTGCGCAACTACTCACGGCGGGAGCT
GGCCTGCTCGGTGCT
BS15866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7816-PG | 1068 | CG7816-RG | 1..849 | 17..865 | 4245 | 100 | Plus |
CG7816-PF | 1068 | CG7816-RF | 1..849 | 17..865 | 4245 | 100 | Plus |
CG7816-PD | 1068 | CG7816-RD | 1..849 | 17..865 | 4245 | 100 | Plus |
CG7816-PA | 1068 | CG7816-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
CG7816-PE | 1068 | CG7816-RE | 1..849 | 17..865 | 4245 | 100 | Plus |
CG7816-PC | 1068 | CG7816-RC | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip99C-RJ | 1638 | CG7816-RJ | 314..1162 | 17..865 | 4245 | 100 | Plus |
Zip99C-RI | 1709 | CG7816-RI | 385..1233 | 17..865 | 4245 | 100 | Plus |
Zip99C-RH | 1476 | CG7816-RH | 152..1000 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29864413..29864829 | 749..333 | 2085 | 100 | Minus |
3R | 32079331 | 3R | 29865057..29865267 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 29864235..29864350 | 865..750 | 580 | 100 | Minus |
3R | 32079331 | 3R | 29864889..29864996 | 335..228 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:37:23 has no hits.
BS15866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:48 Download gff for
BS15866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-PC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:00 Download gff for
BS15866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7816-RH | 143..1000 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:23:09 Download gff for
BS15866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Zip99C-RH | 143..1000 | 9..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:23:09 Download gff for
BS15866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29864889..29864996 | 228..335 | 100 | <- | Minus |
3R | 29865057..29865273 | 11..227 | 98 | <- | Minus |
3R | 29864235..29864350 | 750..865 | 100 | <- | Minus |
3R | 29864413..29864826 | 336..749 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:00 Download gff for
BS15866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25689957..25690072 | 750..865 | 100 | <- | Minus |
arm_3R | 25690135..25690548 | 336..749 | 100 | <- | Minus |
arm_3R | 25690611..25690718 | 228..335 | 100 | <- | Minus |
arm_3R | 25690779..25690995 | 11..227 | 98 | <- | Minus |
BS15866.pep Sequence
Translation from 16 to 1083
> BS15866.pep
MTTNSSFFDEHIAMIYSNLMDQYMPEYFKSFEYTPWVFSLLGSVVIGLSG
IFPLIIIPTEEKMAKEGYKDPADSKLLRVLLSFAVGGLLGDVFLHLLPEA
WEGDNQDPSSHPSLRSGLWVLSGILIFTIVEKIFSGYASADEENPQPKCV
EIANCLLRRHGGQLPEGETSESCGGACDIEDVGKVCFLREQEQKSKERKE
QPKKVAGYLNLLANSIDNFTHGLAVAGSFLVSFRHGILATFAILLHEIPH
EVGDFAILLRSGFSRWDAARAQLLTAGAGLLGALVAIGGSGVTSAMEART
SWIMPFTAGGFLHIALVTVLPDLLKEEERKESIKQLLALVFGIALMAVMT
MLFEH*
BS15866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Zip99C-PJ | 355 | CG7816-PJ | 1..355 | 1..355 | 1825 | 100 | Plus |
Zip99C-PI | 355 | CG7816-PI | 1..355 | 1..355 | 1825 | 100 | Plus |
Zip99C-PH | 355 | CG7816-PH | 1..355 | 1..355 | 1825 | 100 | Plus |
Zip99C-PC | 355 | CG7816-PC | 1..355 | 1..355 | 1825 | 100 | Plus |
Zip99C-PE | 355 | CG7816-PE | 1..355 | 1..355 | 1825 | 100 | Plus |