Clone Sequence Records
BS15883.complete Sequence
509 bp assembled on 2010-02-09
GenBank Submission: KX800662
> BS15883.complete
GAAGTTATCAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACG
ATCTCAATGTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATC
ATCCTGGCAGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAA
CTTTGCCGTAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCG
GTTGCAACATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGC
ACTGCAGCCGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTG
TGCAGTGGTGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCT
GCCGGCAGTTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTAC
GCCGCCAAGCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCT
CCAACTGCTGCCCAACGGCTTTAGCTTCGCCAACGGAAAATAGAAGCTTT
CTAGACCAT
BS15883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 477 | CG8360-PC | 1..477 | 17..493 | 2385 | 100 | Plus |
CG8360-RA | 477 | CG8360-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 787 | CG8360-RC | 175..654 | 16..495 | 2400 | 100 | Plus |
CG8360-RA | 714 | CG8360-RA | 102..581 | 16..495 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8213778..8214002 | 271..495 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 8213336..8213529 | 80..273 | 970 | 100 | Plus |
2L | 23513712 | 2L | 8213218..8213282 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:33:38 has no hits.
BS15883.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:16 Download gff for
BS15883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 41..510 | 17..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:52 Download gff for
BS15883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 103..572 | 17..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:17 Download gff for
BS15883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 41..510 | 17..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:38 Download gff for
BS15883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 103..572 | 17..486 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:38 Download gff for
BS15883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8213219..8213282 | 17..80 | 100 | -> | Plus |
2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
2L | 8213781..8213993 | 274..486 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:52 Download gff for
BS15883.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8213219..8213282 | 17..80 | 100 | -> | Plus |
arm_2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
arm_2L | 8213781..8213993 | 274..486 | 100 | | Plus |
BS15883.3prime Sequence
507 bp (507 high quality bases) assembled on 2007-04-16
> BS15883.3prime
ATGGTCTAGAAAGCTTCTATCTTCCGTTGGCGAAGCTAAAGCCGTTGGGC
AGCAGTTGGAGAACGCTGGTGCAGAGCACCCTCAATGGAAGATTGGTCGG
CTTGGCGGCGTACAGGGGGATGTCCTTGCCGTTGACGAACTCCGAGAGGA
ACTGCCGGCAGACGCCACAAGGCGTGGTGAAGCCATTATCCTGCTGGGCC
ACCACTGCACAAGCCACAAAGTCGCGTTTGCCTTCACTGATGGCCTTGAC
GGCTGCAGTGCGCTCTGCACAAATGCAGGTGGCATACGCCCCGTTTTCGA
TGTTGCAACCGGAGTATATGGTGCCATCGCTGGTCCTCAGGGCGGCTCCT
ACGGCAAAGTTACTGTACGGACAATAAGCCTGTTTTCTGGCTTCCGTGGC
TGCCAGGATGATCTCTTGAATCGAAGGATCCAGGCTCTGGAATTCCCGTA
CATTGAGATCGTCTCTGGCACCATTGATAAACACCTGTGTCATGTCGACT
GATAACT
BS15883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-PA | 477 | CG8360-RA | 1..472 | 493..22 | 2360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 787 | CG8360-RC | 175..654 | 494..15 | 2385 | 99.8 | Minus |
CG8360-RA | 714 | CG8360-RA | 102..581 | 494..15 | 2385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8213778..8214002 | 239..15 | 1110 | 99.6 | Minus |
2L | 23513712 | 2L | 8213336..8213529 | 430..237 | 970 | 100 | Minus |
2L | 23513712 | 2L | 8213218..8213282 | 494..430 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:59:25 has no hits.
BS15883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:57 Download gff for
BS15883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-PA | 1..477 | 17..493 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:28 Download gff for
BS15883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..581 | 15..494 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:52 Download gff for
BS15883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..581 | 15..494 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:52 Download gff for
BS15883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8213218..8213282 | 430..494 | 100 | -> | Minus |
2L | 8213337..8213529 | 237..429 | 100 | -> | Minus |
2L | 8213781..8214002 | 15..236 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:28 Download gff for
BS15883.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8213218..8213282 | 430..494 | 100 | -> | Minus |
arm_2L | 8213337..8213529 | 237..429 | 100 | -> | Minus |
arm_2L | 8213781..8214002 | 15..236 | 99 | | Minus |
BS15883.5prime Sequence
507 bp (507 high quality bases) assembled on 2007-04-17
> BS15883.5prime
GAAGTTATCAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACG
ATCTCAATGTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATC
ATCCTGGCAGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAA
CTTTGCCGTAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCG
GTTGCAACATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGC
ACTGCAGCCGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTG
TGCAGTGGTGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCT
GCCGGCAGTTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTAC
GCCGCCAAGCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCT
CCAACTGCTGCCCAACGGCTTTAGCTTCGCCAACGGAAAATAGAAGCTTT
CTAGACC
BS15883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-PA | 477 | CG8360-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 787 | CG8360-RC | 175..654 | 16..495 | 2400 | 100 | Plus |
CG8360-RA | 714 | CG8360-RA | 102..581 | 16..495 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8213778..8214002 | 271..495 | 1125 | 100 | Plus |
2L | 23513712 | 2L | 8213336..8213529 | 80..273 | 970 | 100 | Plus |
2L | 23513712 | 2L | 8213218..8213282 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:56:00 has no hits.
BS15883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:58 Download gff for
BS15883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-PA | 1..477 | 17..493 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:56 Download gff for
BS15883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..581 | 16..495 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:58 Download gff for
BS15883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..581 | 16..495 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:58 Download gff for
BS15883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
2L | 8213781..8214002 | 274..495 | 100 | | Plus |
2L | 8213218..8213282 | 16..80 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:56 Download gff for
BS15883.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8213218..8213282 | 16..80 | 100 | -> | Plus |
arm_2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
arm_2L | 8213781..8214002 | 274..495 | 100 | | Plus |
BS15883.pep Sequence
Translation from 16 to 492
> BS15883.pep
MTQVFINGARDDLNVREFQSLDPSIQEIILAATEARKQAYCPYSNFAVGA
ALRTSDGTIYSGCNIENGAYATCICAERTAAVKAISEGKRDFVACAVVAQ
QDNGFTTPCGVCRQFLSEFVNGKDIPLYAAKPTNLPLRVLCTSVLQLLPN
GFSFANGK*
BS15883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-PC | 158 | CG8360-PC | 1..158 | 1..158 | 822 | 100 | Plus |
CG8360-PA | 158 | CG8360-PA | 1..158 | 1..158 | 822 | 100 | Plus |
CG8353-PB | 170 | CG8353-PB | 1..165 | 1..152 | 379 | 49.4 | Plus |
CG8353-PA | 170 | CG8353-PA | 1..165 | 1..152 | 379 | 49.4 | Plus |
CG8349-PA | 264 | CG8349-PA | 124..261 | 26..153 | 317 | 50.4 | Plus |