Clone BS15883 Report

Search the DGRC for BS15883

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:158
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG8360-RA
Protein status:BS15883.pep: full length peptide match
Sequenced Size:509

Clone Sequence Records

BS15883.complete Sequence

509 bp assembled on 2010-02-09

GenBank Submission: KX800662

> BS15883.complete
GAAGTTATCAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACG
ATCTCAATGTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATC
ATCCTGGCAGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAA
CTTTGCCGTAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCG
GTTGCAACATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGC
ACTGCAGCCGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTG
TGCAGTGGTGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCT
GCCGGCAGTTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTAC
GCCGCCAAGCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCT
CCAACTGCTGCCCAACGGCTTTAGCTTCGCCAACGGAAAATAGAAGCTTT
CTAGACCAT

BS15883.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-RC 477 CG8360-PC 1..477 17..493 2385 100 Plus
CG8360-RA 477 CG8360-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-RC 787 CG8360-RC 175..654 16..495 2400 100 Plus
CG8360-RA 714 CG8360-RA 102..581 16..495 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8213778..8214002 271..495 1125 100 Plus
2L 23513712 2L 8213336..8213529 80..273 970 100 Plus
2L 23513712 2L 8213218..8213282 16..80 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:33:38 has no hits.

BS15883.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:16 Download gff for BS15883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 41..510 17..486 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:52 Download gff for BS15883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 103..572 17..486 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:17 Download gff for BS15883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 41..510 17..486 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:31:38 Download gff for BS15883.complete
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 103..572 17..486 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:31:38 Download gff for BS15883.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8213219..8213282 17..80 100 -> Plus
2L 8213337..8213529 81..273 100 -> Plus
2L 8213781..8213993 274..486 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:52 Download gff for BS15883.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8213219..8213282 17..80 100 -> Plus
arm_2L 8213337..8213529 81..273 100 -> Plus
arm_2L 8213781..8213993 274..486 100   Plus

BS15883.3prime Sequence

507 bp (507 high quality bases) assembled on 2007-04-16

> BS15883.3prime
ATGGTCTAGAAAGCTTCTATCTTCCGTTGGCGAAGCTAAAGCCGTTGGGC
AGCAGTTGGAGAACGCTGGTGCAGAGCACCCTCAATGGAAGATTGGTCGG
CTTGGCGGCGTACAGGGGGATGTCCTTGCCGTTGACGAACTCCGAGAGGA
ACTGCCGGCAGACGCCACAAGGCGTGGTGAAGCCATTATCCTGCTGGGCC
ACCACTGCACAAGCCACAAAGTCGCGTTTGCCTTCACTGATGGCCTTGAC
GGCTGCAGTGCGCTCTGCACAAATGCAGGTGGCATACGCCCCGTTTTCGA
TGTTGCAACCGGAGTATATGGTGCCATCGCTGGTCCTCAGGGCGGCTCCT
ACGGCAAAGTTACTGTACGGACAATAAGCCTGTTTTCTGGCTTCCGTGGC
TGCCAGGATGATCTCTTGAATCGAAGGATCCAGGCTCTGGAATTCCCGTA
CATTGAGATCGTCTCTGGCACCATTGATAAACACCTGTGTCATGTCGACT
GATAACT

BS15883.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-PA 477 CG8360-RA 1..472 493..22 2360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-RC 787 CG8360-RC 175..654 494..15 2385 99.8 Minus
CG8360-RA 714 CG8360-RA 102..581 494..15 2385 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8213778..8214002 239..15 1110 99.6 Minus
2L 23513712 2L 8213336..8213529 430..237 970 100 Minus
2L 23513712 2L 8213218..8213282 494..430 325 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:59:25 has no hits.

BS15883.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:57 Download gff for BS15883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8360-PA 1..477 17..493 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:28 Download gff for BS15883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 102..581 15..494 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:52 Download gff for BS15883.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 102..581 15..494 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:52 Download gff for BS15883.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8213218..8213282 430..494 100 -> Minus
2L 8213337..8213529 237..429 100 -> Minus
2L 8213781..8214002 15..236 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:28 Download gff for BS15883.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8213218..8213282 430..494 100 -> Minus
arm_2L 8213337..8213529 237..429 100 -> Minus
arm_2L 8213781..8214002 15..236 99   Minus

BS15883.5prime Sequence

507 bp (507 high quality bases) assembled on 2007-04-17

> BS15883.5prime
GAAGTTATCAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACG
ATCTCAATGTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATC
ATCCTGGCAGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAA
CTTTGCCGTAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCG
GTTGCAACATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGC
ACTGCAGCCGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTG
TGCAGTGGTGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCT
GCCGGCAGTTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTAC
GCCGCCAAGCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCT
CCAACTGCTGCCCAACGGCTTTAGCTTCGCCAACGGAAAATAGAAGCTTT
CTAGACC

BS15883.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-PA 477 CG8360-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-RC 787 CG8360-RC 175..654 16..495 2400 100 Plus
CG8360-RA 714 CG8360-RA 102..581 16..495 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8213778..8214002 271..495 1125 100 Plus
2L 23513712 2L 8213336..8213529 80..273 970 100 Plus
2L 23513712 2L 8213218..8213282 16..80 325 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:56:00 has no hits.

BS15883.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:59:58 Download gff for BS15883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8360-PA 1..477 17..493 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:23:56 Download gff for BS15883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 102..581 16..495 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:26:58 Download gff for BS15883.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8360-RA 102..581 16..495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:26:58 Download gff for BS15883.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8213337..8213529 81..273 100 -> Plus
2L 8213781..8214002 274..495 100   Plus
2L 8213218..8213282 16..80 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:23:56 Download gff for BS15883.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8213218..8213282 16..80 100 -> Plus
arm_2L 8213337..8213529 81..273 100 -> Plus
arm_2L 8213781..8214002 274..495 100   Plus

BS15883.pep Sequence

Translation from 16 to 492

> BS15883.pep
MTQVFINGARDDLNVREFQSLDPSIQEIILAATEARKQAYCPYSNFAVGA
ALRTSDGTIYSGCNIENGAYATCICAERTAAVKAISEGKRDFVACAVVAQ
QDNGFTTPCGVCRQFLSEFVNGKDIPLYAAKPTNLPLRVLCTSVLQLLPN
GFSFANGK*

BS15883.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG8360-PC 158 CG8360-PC 1..158 1..158 822 100 Plus
CG8360-PA 158 CG8360-PA 1..158 1..158 822 100 Plus
CG8353-PB 170 CG8353-PB 1..165 1..152 379 49.4 Plus
CG8353-PA 170 CG8353-PA 1..165 1..152 379 49.4 Plus
CG8349-PA 264 CG8349-PA 124..261 26..153 317 50.4 Plus