Clone Sequence Records
BS15893.complete Sequence
1178 bp assembled on 2009-07-30
GenBank Submission: KX803964
> BS15893.complete
GAAGTTATCAGTCGACATGGAGGCAAATGGCGATACCAGCGCCTGCAATG
GGTATTCGGACAAGCAGCGGAAGGATGTGCGCGTCTGGTGCGATGGATGC
TATGATATGGTACACTTCGGACATGCCAATTCTCTGCGACAAGCCAAGGC
TCTTGGCGATAAGGTAATTGTGGGCATTCACACCGACGAGGAGATCACCA
AGCACAAGGGACCACCGGTCTTCACCGAGGAGGAGCGCGTCAAGATGGTC
AAGGGCATCAAATGGGTGGATGAGGTGGTGCTCGGTGCTCCGTATGTGAC
CACACTGGATGTGCTCGACCAGAACAACTGTGATTTCTGTGTGCATGGAG
ATGACATTACAATGACAGCCGAAGGAGTGGACACATATCATTTGGTCAAA
TCAGCCAATCGCTACAAGGAAGTGAAACGCACAGCTGGAGTCTCGACCAC
TGACCTTGTGGGCCGCATGTTGCTCCTGACACGCAACCACTTCCGTCAAG
GATCCGCGGAATATGATATCGAGAAAGAAGGTTCTTCGAACATGGGTCAA
GATTCGGCAGCCAAAAGTCCGTGGACCGGTTGTAGTCAGTTCTTGCCGAC
TACCCAAAAGATCATACAGTTCAGTGATGGAAAGTCACCGAATCCCGGCG
ATAAGATTGTTTATGTGGCTGGCGCCTTCGATCTCTTCCATGTGGGTCAC
CTGGACTTTCTGGAAAAGGCTAAGAAACTGGGTGACTATCTGATTGTTGG
CCTGCACACAGATCCCGTGGTGAACTCCTACAAGGGCAGCAACTATCCCA
TTATGAATCTGCACGAGCGCGTGCTCAGTGTTTTGGCCTGCAAGTTTGTC
AATGAGGTAGTAATCGGAGCTCCCTACTGTGTCACTGAAGAGCTGCTTGA
GCACTTCAAAATCGATGTTGTCTGTCATGGACGCACACCCATTGCGCTTG
AGAATGGCAAGATCGATCCATATGCCGTTCCCAAGACGCGAGCCATCTTT
GAGCTGATCGATTCCGGCAACGAGATGACCACGGAGCGCATCGTGGAGCG
CATCATCTCGCACCGACTGGAATATGAGCGTCGCAATCAGGCCAAAGAAA
AGAAGGAAATCGAAGCCTTTGAGGCACTTCAACGCCAAAAACAGACCCAA
AAGGCCGGCTAGAAGCTTTCTAGACCAT
BS15893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 1146 | CG5547-PD | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| Pect-RC | 1125 | CG5547-PC | 1..1125 | 17..1162 | 5380 | 98.2 | Plus |
| Pect-RB | 1182 | CG5547-PB | 549..1182 | 529..1162 | 3170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 429..1574 | 17..1162 | 5730 | 100 | Plus |
| Pect-RC | 2153 | CG5547-RC | 429..1553 | 17..1162 | 5380 | 98.2 | Plus |
| Pect-RB | 2210 | CG5547-RB | 977..1610 | 529..1162 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13209909..13210228 | 843..1162 | 1600 | 100 | Plus |
| 2L | 23513712 | 2L | 13208109..13208360 | 99..350 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 659..844 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 13209470..13209601 | 529..660 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 13208665..13208779 | 418..532 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 349..418 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:22 has no hits.
BS15893.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-31 08:53:25 Download gff for
BS15893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 423..1568 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:34 Download gff for
BS15893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 429..1574 | 17..1162 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:35 Download gff for
BS15893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 429..1574 | 17..1162 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:35 Download gff for
BS15893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13204190..13204272 | 17..99 | 100 | -> | Plus |
| 2L | 13208110..13208360 | 100..350 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 351..417 | 100 | -> | Plus |
| 2L | 13208665..13208777 | 418..530 | 100 | -> | Plus |
| 2L | 13209472..13209599 | 531..658 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 659..844 | 100 | -> | Plus |
| 2L | 13209911..13210228 | 845..1162 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:34 Download gff for
BS15893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13204190..13204272 | 17..99 | 100 | -> | Plus |
| arm_2L | 13208110..13208360 | 100..350 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 351..417 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 418..530 | 100 | -> | Plus |
| arm_2L | 13209472..13209599 | 531..658 | 100 | -> | Plus |
| arm_2L | 13209660..13209845 | 659..844 | 100 | -> | Plus |
| arm_2L | 13209911..13210228 | 845..1162 | 100 | | Plus |
BS15893.3prime Sequence
910 bp (797 high quality bases) assembled on 2007-04-16
> BS15893.3prime
ATGGTCTAGAAAGCTTCTAGCCGGCCTTTTGGGTCTGTTTTTGGCGTTGA
AGTGCCTCAAAGGCTTCGATTTCCTTCTTTTCTTTGGCCTGATTGCGACG
CTCATATTCCAGTCGGTGCGAGATGATGCGCTCCACGATGCGCTCCGTGG
TCATCTCGTTGCCGGAATCGATCAGCTCAAAGATGGCTCGCGTCTTGGGA
ACGGCATATGGATCGATCTTGCCATTCTCAAGCGCAATGGGTGTGCGTCC
ATGACAGACAACATCGATTTTGAAGTGCTCAAGCAGCTCTTCAGTGACAC
AGTAGGGAGCTCCGATTACTACCTCATTGACAAACTTGCAGGCCAAAACA
CTGAGCACGCGCTCGTGCAGATTCATAATGGGATAGTTGCTGCCCTTGTA
GGAGTTCACCACGGGATCTGTGTGCAGGCCAACAATCAGATAGTCACCCA
GTTTCTTAGCCTTTTCCAGAAAGTCCAGGTGACCCACATGGAAGAGATCG
AAGGCGCCAGCCACATAAACAATCTTATCGCCGGGATTCGGTGACTTTCC
ATCACTGAACTGTATGATCTTTTGGGTAGTCGGCAAGAACTGACTACAAC
CGGTCCACGGACTTTTGGCTGCCGAATCTTGACCCATGTTCGAAGAACCT
TCTTTCTCGATATCATATTCCGCGGATCCTTGACGGAAGTGGTTGCGTGT
CAGGAGCAACATGCGGCCCACAAGGTCAGTGGTCGAGACTCCAGCTGTGC
GTTTCACTTCCTTGTAGCGATTGGCTGATTTGACCAAATGATATGTGTCC
ACTCCTTCGGCTGTCATTGTAATGTCATCTCCATGCACACAGAAATCACA
GTTGGTTCTGGTCGAGCACATCCAAGTGTGGTCACATACCGAGCACCGAG
CACCACCTCA
BS15893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5547-PD | 1146 | Pect-RD | 255..1146 | 910..17 | 4365 | 99.6 | Minus |
| CG5547-PB | 1182 | Pect-RB | 549..1182 | 650..17 | 3170 | 100 | Minus |
| CG5547-PA | 621 | Pect-RA | 1..621 | 637..17 | 3105 | 100 | Minus |
| CG5547-PC | 1125 | Pect-RC | 512..1125 | 630..17 | 3070 | 100 | Minus |
| CG5547-PB | 1182 | Pect-RB | 255..514 | 910..649 | 1205 | 98.8 | Minus |
| CG5547-PC | 1125 | Pect-RC | 255..514 | 910..649 | 1205 | 98.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 683..1574 | 910..17 | 4405 | 99.7 | Minus |
| Pect-RC | 2153 | CG5547-RC | 683..1553 | 910..17 | 4080 | 97.3 | Minus |
| Pect-RB | 2210 | CG5547-RB | 977..1610 | 650..17 | 3170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13209909..13210228 | 336..17 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 13209660..13209845 | 520..335 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 13209470..13209601 | 650..519 | 660 | 100 | Minus |
| 2L | 23513712 | 2L | 13208665..13208779 | 761..647 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 13208419..13208488 | 830..761 | 350 | 100 | Minus |
| 2L | 23513712 | 2L | 13208281..13208360 | 910..829 | 295 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:08:29 has no hits.
BS15893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:05 Download gff for
BS15893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5547-PD | 256..1146 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:23 Download gff for
BS15893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 684..1574 | 17..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:06 Download gff for
BS15893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 684..1574 | 17..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:06 Download gff for
BS15893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13208282..13208360 | 829..909 | 96 | -> | Minus |
| 2L | 13208421..13208487 | 762..828 | 100 | -> | Minus |
| 2L | 13208665..13208777 | 649..761 | 100 | -> | Minus |
| 2L | 13209472..13209599 | 521..648 | 100 | -> | Minus |
| 2L | 13209660..13209845 | 335..520 | 100 | -> | Minus |
| 2L | 13209911..13210228 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:23 Download gff for
BS15893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13208282..13208360 | 829..909 | 96 | -> | Minus |
| arm_2L | 13208421..13208487 | 762..828 | 100 | -> | Minus |
| arm_2L | 13208665..13208777 | 649..761 | 100 | -> | Minus |
| arm_2L | 13209472..13209599 | 521..648 | 100 | -> | Minus |
| arm_2L | 13209660..13209845 | 335..520 | 100 | -> | Minus |
| arm_2L | 13209911..13210228 | 17..334 | 100 | | Minus |
BS15893.5prime Sequence
853 bp (710 high quality bases) assembled on 2007-04-17
> BS15893.5prime
GAAGTTATCAGTCGACATGGAGGCAAATGGCGATACCAGCGCCTGCAATG
GGTATTCGGACAAGCAGCGGAAGGATGTGCGCGTCTGGTGCGATGGATGC
TATGATATGGTACACTTCGGACATGCCAATTCTCTGCGACAAGCCAAGGC
TCTTGGCGATAAGGTAATTGTGGGCATTCACACCGACGAGGAGATCACCA
AGCACAAGGGACCACCGGTCTTCACCGAGGAGGAGCGCGTCAAGATGGTC
AAGGGCATCAAATGGGTGGATGAGGTGGTGCTCGGTGCTCCGTATGTGAC
CACACTGGATGTGCTCGACCAGAACAACTGTGATTTCTGTGTGCATGGAG
ATGACATTACAATGACAGCCGAAGGAGTGGACACATATCATTTGGTCAAA
TCAGCCAATCGCTACAAGGAAGTGAAACGCACAGCTGGAGTCTCGACCAC
TGACCTTGTGGGCCGCATGTTGCTCCTGACACGCAACCACTTCCGTCAAG
GATCCGCGGAATATGATATCGAGAAAGAAGGTTCTTCGAACATGGGTCAA
GATTCGGCAGCCAAAAGTCCGTGGACCGGTTGTAGTCAGTTCTTGCCGAC
TACCCAAAAGATCATACAGTTCAGTGATGGAAAGTCACCGAATCCCGGCG
ATAAGATTGTTTATGTGGCTGGCGCCTTCGATCTCTTCCATGTGGGTCAC
CTGGACTTTCTGGAAAAGGCTAAGAAACTGGGTGACTATCTGATTGTTGG
CCTGCACACAGATCCCGTGGTGAACTCCTACAAGGGCAGCAACTATCCCA
TTATGAATCTGCACGAGCGCGTGCTCAGTGTTTTGGCCTGCAAGTTTGTC
AAT
BS15893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5547-PD | 1146 | Pect-RD | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG5547-PB | 1182 | Pect-RB | 1..514 | 17..530 | 2570 | 100 | Plus |
| CG5547-PC | 1125 | Pect-RC | 1..514 | 17..530 | 2570 | 100 | Plus |
| CG5547-PB | 1182 | Pect-RB | 549..873 | 529..853 | 1625 | 100 | Plus |
| CG5547-PA | 621 | Pect-RA | 1..312 | 542..853 | 1560 | 100 | Plus |
| CG5547-PC | 1125 | Pect-RC | 512..816 | 549..853 | 1525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-RD | 2174 | CG5547-RD | 429..1265 | 17..853 | 4185 | 100 | Plus |
| Pect-RC | 2153 | CG5547-RC | 429..1244 | 17..853 | 3860 | 97.5 | Plus |
| Pect-RE | 2144 | CG5547-RE | 429..942 | 17..530 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13208109..13208360 | 99..350 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 13209660..13209845 | 659..844 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 13209470..13209601 | 529..660 | 660 | 100 | Plus |
| 2L | 23513712 | 2L | 13208665..13208779 | 418..532 | 575 | 100 | Plus |
| 2L | 23513712 | 2L | 13204190..13204272 | 17..99 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 13208419..13208488 | 349..418 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:05:54 has no hits.
BS15893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:05 Download gff for
BS15893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5547-PD | 1..837 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:26 Download gff for
BS15893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 418..1265 | 7..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:24:20 Download gff for
BS15893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pect-RD | 418..1265 | 7..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:24:20 Download gff for
BS15893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13204179..13204272 | 7..99 | 96 | -> | Plus |
| 2L | 13208110..13208360 | 100..350 | 100 | -> | Plus |
| 2L | 13208421..13208487 | 351..417 | 100 | -> | Plus |
| 2L | 13208665..13208777 | 418..530 | 100 | -> | Plus |
| 2L | 13209472..13209599 | 531..658 | 100 | -> | Plus |
| 2L | 13209660..13209845 | 659..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:26 Download gff for
BS15893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13204179..13204272 | 7..99 | 96 | -> | Plus |
| arm_2L | 13208110..13208360 | 100..350 | 100 | -> | Plus |
| arm_2L | 13208421..13208487 | 351..417 | 100 | -> | Plus |
| arm_2L | 13208665..13208777 | 418..530 | 100 | -> | Plus |
| arm_2L | 13209472..13209599 | 531..658 | 100 | -> | Plus |
| arm_2L | 13209660..13209845 | 659..844 | 100 | | Plus |
BS15893.pep Sequence
Translation from 16 to 1161
> BS15893.pep
MEANGDTSACNGYSDKQRKDVRVWCDGCYDMVHFGHANSLRQAKALGDKV
IVGIHTDEEITKHKGPPVFTEEERVKMVKGIKWVDEVVLGAPYVTTLDVL
DQNNCDFCVHGDDITMTAEGVDTYHLVKSANRYKEVKRTAGVSTTDLVGR
MLLLTRNHFRQGSAEYDIEKEGSSNMGQDSAAKSPWTGCSQFLPTTQKII
QFSDGKSPNPGDKIVYVAGAFDLFHVGHLDFLEKAKKLGDYLIVGLHTDP
VVNSYKGSNYPIMNLHERVLSVLACKFVNEVVIGAPYCVTEELLEHFKID
VVCHGRTPIALENGKIDPYAVPKTRAIFELIDSGNEMTTERIVERIISHR
LEYERRNQAKEKKEIEAFEALQRQKQTQKAG*
BS15893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pect-PD | 381 | CG5547-PD | 1..381 | 1..381 | 2013 | 100 | Plus |
| Pect-PB | 393 | CG5547-PB | 1..393 | 1..381 | 1990 | 96.9 | Plus |
| Pect-PC | 374 | CG5547-PC | 1..374 | 1..381 | 1959 | 98.2 | Plus |
| Pect-PE | 371 | CG5547-PE | 1..371 | 1..381 | 1942 | 97.4 | Plus |
| Cct2-PA | 381 | CG18330-PA | 74..212 | 16..152 | 227 | 39.3 | Plus |
