Clone BS15901 Report

Search the DGRC for BS15901

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptnemy-RA
Protein status:BS15901.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15901.3prime Sequence

386 bp (370 high quality bases) assembled on 2007-04-16

> BS15901.3prime
ATGGTCTAGAAAGCTTCTAAATGCGCTCCGTGACGTAGACCTTCGCCGAG
GCGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAA
GATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGT
TCTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATC
AGTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAA
GCTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCT
CACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGC
ACGAACATGCCCATTGTCACGAAGCCCAGCCACGAG

BS15901.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-PD 633 CG8776-RD 264..633 386..17 1850 100 Minus
CG8776-PA 873 CG8776-RA 504..873 386..17 1850 100 Minus
CG8776-PE 804 CG8776-RE 435..804 386..17 1850 100 Minus
CG8776-PC 633 CG8776-RC 264..633 386..17 1850 100 Minus
CG8776-PB 804 CG8776-RB 435..804 386..17 1850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RB 1804 CG8776-RB 688..1058 386..16 1855 100 Minus
nemy-RC 1601 CG8776-RC 485..855 386..16 1855 100 Minus
nemy-RA 1994 CG8776-RA 878..1248 386..16 1855 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660457..12660630 159..332 855 99.4 Plus
2R 25286936 2R 12660243..12660387 16..160 725 100 Plus
2R 25286936 2R 12660678..12660740 324..386 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:51:00 has no hits.

BS15901.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:06 Download gff for BS15901.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PB 435..804 17..386 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:26 Download gff for BS15901.3prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 876..1246 16..386 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:08 Download gff for BS15901.3prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 878..1248 16..386 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:08 Download gff for BS15901.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12660243..12660385 16..158 100 <- Plus
2R 12660457..12660621 159..323 100 <- Plus
2R 12660678..12660740 324..386 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:26 Download gff for BS15901.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8547748..8547890 16..158 100 <- Plus
arm_2R 8547962..8548126 159..323 100 <- Plus
arm_2R 8548183..8548245 324..386 100   Plus

BS15901.5prime Sequence

889 bp (830 high quality bases) assembled on 2007-04-16

> BS15901.5prime
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCNATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTTAG

BS15901.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-PA 873 CG8776-RA 1..873 17..889 4346 99.8 Plus
CG8776-PE 804 CG8776-RE 51..804 136..889 3751 99.8 Plus
CG8776-PB 804 CG8776-RB 51..804 136..889 3751 99.8 Plus
CG8776-PD 633 CG8776-RD 1..633 257..889 3146 99.8 Plus
CG8776-PC 633 CG8776-RC 1..633 257..889 3146 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 1994 CG8776-RA 373..1247 15..889 4364 99.9 Plus
nemy-RB 1804 CG8776-RB 304..1057 136..889 3759 99.9 Plus
nemy-RC 1601 CG8776-RC 101..854 136..889 3759 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 359..136 1120 100 Minus
2R 25286936 2R 12660678..12660900 582..360 1115 100 Minus
2R 25286936 2R 12660457..12660630 747..574 855 99.4 Minus
2R 25286936 2R 12660244..12660387 889..746 709 99.3 Minus
2R 25286936 2R 12667834..12667955 136..15 610 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:06:06 has no hits.

BS15901.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:07 Download gff for BS15901.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8776-PA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:31 Download gff for BS15901.5prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 369..1245 12..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:24:49 Download gff for BS15901.5prime
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 371..1247 12..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:24:49 Download gff for BS15901.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12660678..12660900 360..582 100 <- Minus
2R 12660973..12661196 136..359 100 <- Minus
2R 12667835..12667957 12..135 99   Minus
2R 12660244..12660385 748..889 99 <- Minus
2R 12660457..12660621 583..747 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:31 Download gff for BS15901.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8548478..8548701 136..359 100 <- Minus
arm_2R 8555340..8555462 12..135 99   Minus
arm_2R 8547749..8547890 748..889 99 <- Minus
arm_2R 8547962..8548126 583..747 100 <- Minus
arm_2R 8548183..8548405 360..582 100 <- Minus

BS15901.complete Sequence

905 bp assembled on 2007-05-07

GenBank Submission: FJ637977

> BS15901.complete
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCAATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTTAGAAGCTTTCTAG
ACCAT

BS15901.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 873 CG8776-PA 1..873 17..889 4365 100 Plus
nemy-RB 804 CG8776-PB 51..804 136..889 3770 100 Plus
nemy-RG 804 CG8776-PG 51..804 136..889 3770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-RA 1994 CG8776-RA 373..1248 15..890 4380 100 Plus
nemy-RB 1804 CG8776-RB 304..1058 136..890 3775 100 Plus
nemy-RC 1601 CG8776-RC 101..855 136..890 3775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12660973..12661196 359..136 1120 100 Minus
2R 25286936 2R 12660678..12660900 582..360 1115 100 Minus
2R 25286936 2R 12660457..12660630 747..574 855 99.4 Minus
2R 25286936 2R 12660243..12660387 890..746 725 100 Minus
2R 25286936 2R 12667834..12667955 136..15 610 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:45:33 has no hits.

BS15901.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:50 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 1..873 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:53 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 369..1246 12..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:10 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 373..1245 17..889 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:50 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 369..1246 12..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:53 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 375..1247 17..889 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:53 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12660973..12661196 136..359 100 <- Minus
2R 12667835..12667953 17..135 100   Minus
2R 12660244..12660385 748..889 100 <- Minus
2R 12660457..12660621 583..747 100 <- Minus
2R 12660678..12660900 360..582 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:10 Download gff for BS15901.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8548478..8548701 136..359 100 <- Minus
arm_2R 8555340..8555458 17..135 100   Minus
arm_2R 8547749..8547890 748..889 100 <- Minus
arm_2R 8547962..8548126 583..747 100 <- Minus
arm_2R 8548183..8548405 360..582 100 <- Minus

BS15901.pep Sequence

Translation from 16 to 888

> BS15901.pep
MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW
NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH
PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI
SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT
YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV
EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERI*

BS15901.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PA 290 CG8776-PA 1..290 1..290 1526 100 Plus
nemy-PB 267 CG8776-PB 18..267 41..290 1308 100 Plus
nemy-PG 267 CG8776-PG 18..267 41..290 1308 100 Plus
nemy-PE 267 CG8776-PE 18..267 41..290 1308 100 Plus
nemy-PL 256 CG8776-PL 6..256 39..290 1298 99.2 Plus