Clone Sequence Records
BS15901.3prime Sequence
386 bp (370 high quality bases) assembled on 2007-04-16
> BS15901.3prime
ATGGTCTAGAAAGCTTCTAAATGCGCTCCGTGACGTAGACCTTCGCCGAG
GCGGGCGCATTGGAACGCCGCACCGCGAAGGTGACGATGATGCCAATGAA
GATCAGGGTCACGCCGATGGCACTGGTGATGTAGTGCTCCACCAGCTTGT
TCTCACTGCTCACGCCCGCCTCGTTGACGGTTTCGCGCTCCTTCTCGATC
AGTCCCGTGACGGATGTGGCAATGGCCAGCCAGAAGTTGGCCAGTCCCAA
GCTGGCGTGGATGGGCACCATGGCCGAGCGGCAGCTGTAGGTCTTGTTCT
CACAGCACAGCATTACCAGAAAGCTGAAGAAGCCGATCACAAACTGGAGC
ACGAACATGCCCATTGTCACGAAGCCCAGCCACGAG
BS15901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:58:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8776-PD | 633 | CG8776-RD | 264..633 | 386..17 | 1850 | 100 | Minus |
CG8776-PA | 873 | CG8776-RA | 504..873 | 386..17 | 1850 | 100 | Minus |
CG8776-PE | 804 | CG8776-RE | 435..804 | 386..17 | 1850 | 100 | Minus |
CG8776-PC | 633 | CG8776-RC | 264..633 | 386..17 | 1850 | 100 | Minus |
CG8776-PB | 804 | CG8776-RB | 435..804 | 386..17 | 1850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RB | 1804 | CG8776-RB | 688..1058 | 386..16 | 1855 | 100 | Minus |
nemy-RC | 1601 | CG8776-RC | 485..855 | 386..16 | 1855 | 100 | Minus |
nemy-RA | 1994 | CG8776-RA | 878..1248 | 386..16 | 1855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660457..12660630 | 159..332 | 855 | 99.4 | Plus |
2R | 25286936 | 2R | 12660243..12660387 | 16..160 | 725 | 100 | Plus |
2R | 25286936 | 2R | 12660678..12660740 | 324..386 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:51:00 has no hits.
BS15901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:06 Download gff for
BS15901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PB | 435..804 | 17..386 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:26 Download gff for
BS15901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 876..1246 | 16..386 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:50:08 Download gff for
BS15901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 878..1248 | 16..386 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:50:08 Download gff for
BS15901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660243..12660385 | 16..158 | 100 | <- | Plus |
2R | 12660457..12660621 | 159..323 | 100 | <- | Plus |
2R | 12660678..12660740 | 324..386 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:26 Download gff for
BS15901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8547748..8547890 | 16..158 | 100 | <- | Plus |
arm_2R | 8547962..8548126 | 159..323 | 100 | <- | Plus |
arm_2R | 8548183..8548245 | 324..386 | 100 | | Plus |
BS15901.5prime Sequence
889 bp (830 high quality bases) assembled on 2007-04-16
> BS15901.5prime
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCNATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTTAG
BS15901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8776-PA | 873 | CG8776-RA | 1..873 | 17..889 | 4346 | 99.8 | Plus |
CG8776-PE | 804 | CG8776-RE | 51..804 | 136..889 | 3751 | 99.8 | Plus |
CG8776-PB | 804 | CG8776-RB | 51..804 | 136..889 | 3751 | 99.8 | Plus |
CG8776-PD | 633 | CG8776-RD | 1..633 | 257..889 | 3146 | 99.8 | Plus |
CG8776-PC | 633 | CG8776-RC | 1..633 | 257..889 | 3146 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 1994 | CG8776-RA | 373..1247 | 15..889 | 4364 | 99.9 | Plus |
nemy-RB | 1804 | CG8776-RB | 304..1057 | 136..889 | 3759 | 99.9 | Plus |
nemy-RC | 1601 | CG8776-RC | 101..854 | 136..889 | 3759 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 359..136 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 582..360 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 747..574 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12660244..12660387 | 889..746 | 709 | 99.3 | Minus |
2R | 25286936 | 2R | 12667834..12667955 | 136..15 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:06:06 has no hits.
BS15901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:07 Download gff for
BS15901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:31 Download gff for
BS15901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 369..1245 | 12..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:24:49 Download gff for
BS15901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 371..1247 | 12..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:24:49 Download gff for
BS15901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660678..12660900 | 360..582 | 100 | <- | Minus |
2R | 12660973..12661196 | 136..359 | 100 | <- | Minus |
2R | 12667835..12667957 | 12..135 | 99 | | Minus |
2R | 12660244..12660385 | 748..889 | 99 | <- | Minus |
2R | 12660457..12660621 | 583..747 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:31 Download gff for
BS15901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8548478..8548701 | 136..359 | 100 | <- | Minus |
arm_2R | 8555340..8555462 | 12..135 | 99 | | Minus |
arm_2R | 8547749..8547890 | 748..889 | 99 | <- | Minus |
arm_2R | 8547962..8548126 | 583..747 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 360..582 | 100 | <- | Minus |
BS15901.complete Sequence
905 bp assembled on 2007-05-07
GenBank Submission: FJ637977
> BS15901.complete
GAAGTTATCAGTCGACATGGACACGAACTCGGTGAGTCCCCTTCCGCCGA
TGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGAACTCCC
AATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGAGGAGGA
TCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGCTGATCG
TCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACCCTCTTC
TGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCCCAAGCA
GCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCACGCTCT
CCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAGCAAATC
TATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCCGTGCAT
CGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGCATAAGG
TCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATGGGCATG
TTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAATGCTGTG
CTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCATCCACG
CCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCCGTCACG
GGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGTGAGCAG
TGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCGTGACCC
TGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCCAATGCG
CCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTTAGAAGCTTTCTAG
ACCAT
BS15901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 873 | CG8776-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
nemy-RB | 804 | CG8776-PB | 51..804 | 136..889 | 3770 | 100 | Plus |
nemy-RG | 804 | CG8776-PG | 51..804 | 136..889 | 3770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-RA | 1994 | CG8776-RA | 373..1248 | 15..890 | 4380 | 100 | Plus |
nemy-RB | 1804 | CG8776-RB | 304..1058 | 136..890 | 3775 | 100 | Plus |
nemy-RC | 1601 | CG8776-RC | 101..855 | 136..890 | 3775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12660973..12661196 | 359..136 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 582..360 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 747..574 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12660243..12660387 | 890..746 | 725 | 100 | Minus |
2R | 25286936 | 2R | 12667834..12667955 | 136..15 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:45:33 has no hits.
BS15901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:50 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:53 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RA | 369..1246 | 12..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:10 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 373..1245 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:50 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8776-RA | 369..1246 | 12..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:53 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nemy-RA | 375..1247 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:53 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12660973..12661196 | 136..359 | 100 | <- | Minus |
2R | 12667835..12667953 | 17..135 | 100 | | Minus |
2R | 12660244..12660385 | 748..889 | 100 | <- | Minus |
2R | 12660457..12660621 | 583..747 | 100 | <- | Minus |
2R | 12660678..12660900 | 360..582 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:10 Download gff for
BS15901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8548478..8548701 | 136..359 | 100 | <- | Minus |
arm_2R | 8555340..8555458 | 17..135 | 100 | | Minus |
arm_2R | 8547749..8547890 | 748..889 | 100 | <- | Minus |
arm_2R | 8547962..8548126 | 583..747 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 360..582 | 100 | <- | Minus |
BS15901.pep Sequence
Translation from 16 to 888
> BS15901.pep
MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW
NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH
PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI
SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT
YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV
EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERI*
BS15901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nemy-PA | 290 | CG8776-PA | 1..290 | 1..290 | 1526 | 100 | Plus |
nemy-PB | 267 | CG8776-PB | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PG | 267 | CG8776-PG | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PE | 267 | CG8776-PE | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PL | 256 | CG8776-PL | 6..256 | 39..290 | 1298 | 99.2 | Plus |