Clone Sequence Records
BS15903.3prime Sequence
865 bp (810 high quality bases) assembled on 2007-04-16
> BS15903.3prime
ATGGTCTAGAAAGCTTTTATTTGCGCTTAGCGCACGAATACGCCGTTGCC
TTGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCC
GAAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGT
TCTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCA
GCACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGC
GCAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTC
GATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCG
GTCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCAC
CAGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACC
ATATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGT
CGCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGC
CGAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAAT
TGAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGA
GTGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATC
GACAAAGGTGACCTTTTTGTCCGCGAATTGGTCATCATCGCCAGCATTGG
CAGCCACCGGTTTGGAAATGACCTTTTTAGCCTCCGGCACAAAGCTAAAT
TCGTAGTTATCCTCGCCACCCCAGATGGCCAGGCAGTTATCCCTGGTAAT
GTACTGGTTGATGTC
BS15903.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33523-PD | 1497 | CG33523-RD | 649..1497 | 865..17 | 4195 | 99.7 | Minus |
CG33523-PA | 705 | CG33523-RA | 9..705 | 713..17 | 3485 | 100 | Minus |
CG33523-PC | 723 | CG33523-RC | 28..723 | 712..17 | 3480 | 100 | Minus |
CG33523-PB | 621 | CG33523-RB | 1..621 | 637..17 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RF | 2574 | CG33523-RF | 892..1740 | 865..17 | 4215 | 99.8 | Minus |
Vap-33B-RD | 2574 | CG33523-RD | 892..1740 | 865..17 | 4215 | 99.8 | Minus |
Vap-33B-RE | 2672 | CG33523-RE | 1142..1838 | 713..17 | 3485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5928702..5929040 | 537..199 | 1695 | 100 | Minus |
3L | 28110227 | 3L | 5929104..5929286 | 199..17 | 915 | 100 | Minus |
3L | 28110227 | 3L | 5925472..5925626 | 865..711 | 745 | 98.7 | Minus |
3L | 28110227 | 3L | 5928536..5928640 | 640..536 | 525 | 100 | Minus |
3L | 28110227 | 3L | 5928222..5928297 | 714..639 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:08:33 has no hits.
BS15903.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:08 Download gff for
BS15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-PD | 649..1497 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:26 Download gff for
BS15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RD | 701..1554 | 10..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:18 Download gff for
BS15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RD | 892..1745 | 10..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:18 Download gff for
BS15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5928224..5928296 | 640..712 | 100 | -> | Minus |
3L | 5928537..5928640 | 536..639 | 100 | -> | Minus |
3L | 5925472..5925624 | 713..865 | 98 | -> | Minus |
3L | 5928704..5929039 | 200..535 | 100 | -> | Minus |
3L | 5929104..5929291 | 10..199 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:26 Download gff for
BS15903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5918572..5918724 | 713..865 | 98 | -> | Minus |
arm_3L | 5921324..5921396 | 640..712 | 100 | -> | Minus |
arm_3L | 5921637..5921740 | 536..639 | 100 | -> | Minus |
arm_3L | 5921804..5922139 | 200..535 | 100 | -> | Minus |
arm_3L | 5922204..5922391 | 10..199 | 98 | | Minus |
BS15903.5prime Sequence
880 bp (832 high quality bases) assembled on 2007-04-16
> BS15903.5prime
GAAGTTATCAGTCGACATGTATGATCTCGACATGGAGACCTCCTTTAATT
CGCTGTGGGAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATC
GATGAGAGCGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGT
GCACAACACTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGA
TGCACAGTAAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTAC
TGGGTGGAAAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGACCATATT
CTTCGACATGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGA
AACGCATTGTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTAC
ATTTTGGTATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCAT
CAAGGCGGTGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGA
AAAAGGACATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGG
GGTGGCGAGGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGT
CATTTCCAAACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGG
ACAAAAAGGTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACC
AACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCC
CAAGGATTTTTGTCACTTCAATTCCAAGAATGCGGAAGCCACGATGACCA
TCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCG
CCGGAAAAGTTCGGTGTGCGACCACGTTGC
BS15903.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33523-PD | 1497 | CG33523-RD | 160..1023 | 17..880 | 4195 | 99.5 | Plus |
CG33523-PA | 705 | CG33523-RA | 9..231 | 658..880 | 990 | 98.2 | Plus |
CG33523-PC | 723 | CG33523-RC | 28..249 | 659..880 | 985 | 98.2 | Plus |
CG33523-PB | 621 | CG33523-RB | 1..147 | 734..880 | 610 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RF | 2574 | CG33523-RF | 403..1266 | 17..880 | 4245 | 99.5 | Plus |
Vap-33B-RD | 2574 | CG33523-RD | 403..1266 | 17..880 | 4245 | 99.5 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 403..1044 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5924905..5925322 | 17..434 | 2090 | 100 | Plus |
3L | 28110227 | 3L | 5925400..5925626 | 434..660 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 731..835 | 465 | 96.2 | Plus |
3L | 28110227 | 3L | 5928222..5928297 | 657..732 | 380 | 100 | Plus |
3L | 28110227 | 3L | 5928702..5928748 | 834..880 | 205 | 95.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:28:29 has no hits.
BS15903.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:08 Download gff for
BS15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-PD | 153..1023 | 8..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:27 Download gff for
BS15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RD | 205..1075 | 8..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:14 Download gff for
BS15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RD | 396..1266 | 8..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:14 Download gff for
BS15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5924898..5925322 | 8..434 | 99 | -> | Plus |
3L | 5925401..5925624 | 435..658 | 100 | -> | Plus |
3L | 5928224..5928296 | 659..731 | 100 | -> | Plus |
3L | 5928537..5928640 | 732..835 | 98 | -> | Plus |
3L | 5928704..5928748 | 836..880 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:27 Download gff for
BS15903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5921324..5921396 | 659..731 | 100 | -> | Plus |
arm_3L | 5917998..5918422 | 8..434 | 99 | -> | Plus |
arm_3L | 5918501..5918724 | 435..658 | 100 | -> | Plus |
arm_3L | 5921637..5921740 | 732..835 | 98 | -> | Plus |
arm_3L | 5921804..5921848 | 836..880 | 95 | | Plus |
BS15903.complete Sequence
1370 bp assembled on 2007-05-07
GenBank Submission: FJ637979
> BS15903.complete
GAAGTTATCAGTCGACATGTATGATCTCGACATGGAGACCTCCTTTAATT
CGCTGTGGGAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATC
GATGAGAGCGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGT
GCACAACACTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGA
TGCACAGTAAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTAC
TGGGTGGAAAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGACCATATT
CTTCGACATGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGA
AACGCATTGTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTAC
ATTTTGGTATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCAT
CAAGGCGGTGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGA
AAAAGGACATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGG
GGTGGCGAGGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGT
CATTTCCAAACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGG
ACAAAAAGGTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACC
AACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCC
CAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAAGCCACGATGACCA
TCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCG
CCGGAGAAGTTCCGTGTGCGACCACGTTGCGGCATCATCCAGCCCAATCA
GGAGGCCACCATCAACATATGGTTGAAGTCGGAGCACAAGCTTAGTGACG
ACAGCAAGGATAAGTTCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAA
TGCGGTGGCGCCGATGTGACCGAGCTGTGGCGGAGCAAATCCCCCACATC
TGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTTCGATGAGAACAAAT
CAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGAT
TGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCG
TCAGTTGGCATTCACCCAGAACCTGCAATACGTGACGCTGGCGCTGTTGT
TCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAG
CACGCCGCTACCTGTCCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAA
ATAAAAGCTTTCTAGACCAT
BS15903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RF | 1965 | CG33523-PF | 160..1497 | 17..1354 | 6690 | 100 | Plus |
Vap-33B-RD | 1497 | CG33523-PD | 160..1497 | 17..1354 | 6690 | 100 | Plus |
Vap-33B-RA | 705 | CG33523-PA | 9..705 | 658..1354 | 3485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-RF | 2574 | CG33523-RF | 403..1740 | 17..1354 | 6690 | 100 | Plus |
Vap-33B-RD | 2574 | CG33523-RD | 403..1740 | 17..1354 | 6690 | 100 | Plus |
Vap-33B-RE | 2672 | CG33523-RE | 1142..1838 | 658..1354 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5924905..5925322 | 17..434 | 2090 | 100 | Plus |
3L | 28110227 | 3L | 5928702..5929040 | 834..1172 | 1695 | 100 | Plus |
3L | 28110227 | 3L | 5925400..5925626 | 434..660 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 5929104..5929286 | 1172..1354 | 915 | 100 | Plus |
3L | 28110227 | 3L | 5928536..5928640 | 731..835 | 525 | 100 | Plus |
3L | 28110227 | 3L | 5928222..5928297 | 657..732 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:50:57 has no hits.
BS15903.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:52 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RD | 153..1497 | 8..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:56 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RD | 203..1552 | 8..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:16 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RD | 212..1547 | 17..1352 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:52 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33523-RD | 203..1552 | 8..1361 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:52 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vap-33B-RD | 403..1738 | 17..1352 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:52 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5928537..5928640 | 732..835 | 100 | -> | Plus |
3L | 5924905..5925322 | 17..434 | 100 | -> | Plus |
3L | 5925401..5925624 | 435..658 | 100 | -> | Plus |
3L | 5928224..5928296 | 659..731 | 100 | -> | Plus |
3L | 5928704..5929039 | 836..1171 | 100 | -> | Plus |
3L | 5929104..5929284 | 1172..1352 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:16 Download gff for
BS15903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5918005..5918422 | 17..434 | 100 | -> | Plus |
arm_3L | 5918501..5918724 | 435..658 | 100 | -> | Plus |
arm_3L | 5921324..5921396 | 659..731 | 100 | -> | Plus |
arm_3L | 5921637..5921740 | 732..835 | 100 | -> | Plus |
arm_3L | 5921804..5922139 | 836..1171 | 100 | -> | Plus |
arm_3L | 5922204..5922384 | 1172..1352 | 100 | | Plus |
BS15903.pep Sequence
Translation from 16 to 1353
> BS15903.pep
MYDLDMETSFNSLWETCILRQSTGANDIDESELNQEYLKEGSVFVHNTDV
DGKPLLVFRVKMHSKSKNLDELIRIVVYWVERTQREQHLTQLTIFFDMSG
TSLASMDLEFVKRIVETFKQFYPNSLNYILVYELGWVLNAAFKVIKAVLP
PKAVEILKMISKKDINQYINKDNCLAIWGGEDNYEFSFVPEAKKVISKPV
AANAGDDDQFADKKVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVN
FNSKNAEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATIN
IWLKSEHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQ
HRLVCRFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFT
QNLQYVTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*
BS15903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vap-33B-PF | 654 | CG33523-PF | 54..498 | 1..445 | 2307 | 100 | Plus |
Vap-33B-PD | 498 | CG33523-PD | 54..498 | 1..445 | 2307 | 100 | Plus |
Vap-33B-PA | 234 | CG33523-PA | 3..234 | 214..445 | 1199 | 99.6 | Plus |
Vap-33B-PC | 240 | CG33523-PC | 10..240 | 215..445 | 1197 | 100 | Plus |
Vap-33B-PE | 285 | CG33523-PE | 54..271 | 1..218 | 1119 | 98.6 | Plus |