Clone BS15903 Report

Search the DGRC for BS15903

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG33523-RB
Protein status:BS15903.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS15903.3prime Sequence

865 bp (810 high quality bases) assembled on 2007-04-16

> BS15903.3prime
ATGGTCTAGAAAGCTTTTATTTGCGCTTAGCGCACGAATACGCCGTTGCC
TTGGGACAGGTAGCGGCGTGCTGGCCGAGCTGCTGGTACATCAGAAAGCC
GAAGCCGGCAAACAACAGGAACAACAGCGCCAGCGTCACGTATTGCAGGT
TCTGGGTGAATGCCAACTGACGCTCCATTGCCGTAGCTGGATCTACGCCA
GCACCGGACTTCTTGCTGCAATCCACGCTGGCCTTACTGGACTTGCTTGC
GCAATCTAGCTGCGCTTTTGATTTGTTCTCATCGAAGCGGCAGACCAGTC
GATGCTGCTCCACATCCGCAGATGTGGGGGATTTGCTCCGCCACAGCTCG
GTCACATCGGCGCCACCGCATTCACCGCCTGGCGCGACCATAGCCATCAC
CAGGAACTTATCCTTGCTGTCGTCACTAAGCTTGTGCTCCGACTTCAACC
ATATGTTGATGGTGGCCTCCTGATTGGGCTGGATGATGCCGCAACGTGGT
CGCACACGGAACTTCTCCGGCGATGTGGTTTGGATCTTGTACGTCACTGC
CGAGGTGGCAATAGACTTGATGGTCATCGTGGCTTCCGCATTCTTGGAAT
TGAAGTTGACAAAATCCTTGGGATTGATGTGCAACATGCCCTCGGATGGA
GTGTGCATCTTGTTGATGTTGGTCTCCTTGAGCACCATGGGAGCGGAATC
GACAAAGGTGACCTTTTTGTCCGCGAATTGGTCATCATCGCCAGCATTGG
CAGCCACCGGTTTGGAAATGACCTTTTTAGCCTCCGGCACAAAGCTAAAT
TCGTAGTTATCCTCGCCACCCCAGATGGCCAGGCAGTTATCCCTGGTAAT
GTACTGGTTGATGTC

BS15903.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PD 1497 CG33523-RD 649..1497 865..17 4195 99.7 Minus
CG33523-PA 705 CG33523-RA 9..705 713..17 3485 100 Minus
CG33523-PC 723 CG33523-RC 28..723 712..17 3480 100 Minus
CG33523-PB 621 CG33523-RB 1..621 637..17 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RF 2574 CG33523-RF 892..1740 865..17 4215 99.8 Minus
Vap-33B-RD 2574 CG33523-RD 892..1740 865..17 4215 99.8 Minus
Vap-33B-RE 2672 CG33523-RE 1142..1838 713..17 3485 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5928702..5929040 537..199 1695 100 Minus
3L 28110227 3L 5929104..5929286 199..17 915 100 Minus
3L 28110227 3L 5925472..5925626 865..711 745 98.7 Minus
3L 28110227 3L 5928536..5928640 640..536 525 100 Minus
3L 28110227 3L 5928222..5928297 714..639 380 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:08:33 has no hits.

BS15903.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:08 Download gff for BS15903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PD 649..1497 17..865 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:26 Download gff for BS15903.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 701..1554 10..865 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:18 Download gff for BS15903.3prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RD 892..1745 10..865 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:18 Download gff for BS15903.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5928224..5928296 640..712 100 -> Minus
3L 5928537..5928640 536..639 100 -> Minus
3L 5925472..5925624 713..865 98 -> Minus
3L 5928704..5929039 200..535 100 -> Minus
3L 5929104..5929291 10..199 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:26 Download gff for BS15903.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5918572..5918724 713..865 98 -> Minus
arm_3L 5921324..5921396 640..712 100 -> Minus
arm_3L 5921637..5921740 536..639 100 -> Minus
arm_3L 5921804..5922139 200..535 100 -> Minus
arm_3L 5922204..5922391 10..199 98   Minus

BS15903.5prime Sequence

880 bp (832 high quality bases) assembled on 2007-04-16

> BS15903.5prime
GAAGTTATCAGTCGACATGTATGATCTCGACATGGAGACCTCCTTTAATT
CGCTGTGGGAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATC
GATGAGAGCGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGT
GCACAACACTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGA
TGCACAGTAAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTAC
TGGGTGGAAAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGACCATATT
CTTCGACATGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGA
AACGCATTGTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTAC
ATTTTGGTATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCAT
CAAGGCGGTGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGA
AAAAGGACATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGG
GGTGGCGAGGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGT
CATTTCCAAACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGG
ACAAAAAGGTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACC
AACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCC
CAAGGATTTTTGTCACTTCAATTCCAAGAATGCGGAAGCCACGATGACCA
TCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCG
CCGGAAAAGTTCGGTGTGCGACCACGTTGC

BS15903.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG33523-PD 1497 CG33523-RD 160..1023 17..880 4195 99.5 Plus
CG33523-PA 705 CG33523-RA 9..231 658..880 990 98.2 Plus
CG33523-PC 723 CG33523-RC 28..249 659..880 985 98.2 Plus
CG33523-PB 621 CG33523-RB 1..147 734..880 610 97.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RF 2574 CG33523-RF 403..1266 17..880 4245 99.5 Plus
Vap-33B-RD 2574 CG33523-RD 403..1266 17..880 4245 99.5 Plus
Vap-33B-RE 2672 CG33523-RE 403..1044 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5924905..5925322 17..434 2090 100 Plus
3L 28110227 3L 5925400..5925626 434..660 1135 100 Plus
3L 28110227 3L 5928536..5928640 731..835 465 96.2 Plus
3L 28110227 3L 5928222..5928297 657..732 380 100 Plus
3L 28110227 3L 5928702..5928748 834..880 205 95.7 Plus
Blast to na_te.dros performed on 2015-02-10 23:28:29 has no hits.

BS15903.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:08 Download gff for BS15903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-PD 153..1023 8..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:27 Download gff for BS15903.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 205..1075 8..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:53:14 Download gff for BS15903.5prime
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RD 396..1266 8..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:53:14 Download gff for BS15903.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5924898..5925322 8..434 99 -> Plus
3L 5925401..5925624 435..658 100 -> Plus
3L 5928224..5928296 659..731 100 -> Plus
3L 5928537..5928640 732..835 98 -> Plus
3L 5928704..5928748 836..880 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:27 Download gff for BS15903.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5921324..5921396 659..731 100 -> Plus
arm_3L 5917998..5918422 8..434 99 -> Plus
arm_3L 5918501..5918724 435..658 100 -> Plus
arm_3L 5921637..5921740 732..835 98 -> Plus
arm_3L 5921804..5921848 836..880 95   Plus

BS15903.complete Sequence

1370 bp assembled on 2007-05-07

GenBank Submission: FJ637979

> BS15903.complete
GAAGTTATCAGTCGACATGTATGATCTCGACATGGAGACCTCCTTTAATT
CGCTGTGGGAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATC
GATGAGAGCGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGT
GCACAACACTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGA
TGCACAGTAAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTAC
TGGGTGGAAAGGACTCAGAGGGAGCAGCATCTGACCCAGTTGACCATATT
CTTCGACATGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGA
AACGCATTGTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTAC
ATTTTGGTATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCAT
CAAGGCGGTGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGA
AAAAGGACATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGG
GGTGGCGAGGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGT
CATTTCCAAACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGG
ACAAAAAGGTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACC
AACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCC
CAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAAGCCACGATGACCA
TCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAAACCACATCG
CCGGAGAAGTTCCGTGTGCGACCACGTTGCGGCATCATCCAGCCCAATCA
GGAGGCCACCATCAACATATGGTTGAAGTCGGAGCACAAGCTTAGTGACG
ACAGCAAGGATAAGTTCCTGGTGATGGCTATGGTCGCGCCAGGCGGTGAA
TGCGGTGGCGCCGATGTGACCGAGCTGTGGCGGAGCAAATCCCCCACATC
TGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTTCGATGAGAACAAAT
CAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCCAGCGTGGAT
TGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCAGCTACGGCAATGGAGCG
TCAGTTGGCATTCACCCAGAACCTGCAATACGTGACGCTGGCGCTGTTGT
TCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGTACCAGCAGCTCGGCCAG
CACGCCGCTACCTGTCCCAAGGCAACGGCGTATTCGTGCGCTAAGCGCAA
ATAAAAGCTTTCTAGACCAT

BS15903.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RF 1965 CG33523-PF 160..1497 17..1354 6690 100 Plus
Vap-33B-RD 1497 CG33523-PD 160..1497 17..1354 6690 100 Plus
Vap-33B-RA 705 CG33523-PA 9..705 658..1354 3485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-RF 2574 CG33523-RF 403..1740 17..1354 6690 100 Plus
Vap-33B-RD 2574 CG33523-RD 403..1740 17..1354 6690 100 Plus
Vap-33B-RE 2672 CG33523-RE 1142..1838 658..1354 3485 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5924905..5925322 17..434 2090 100 Plus
3L 28110227 3L 5928702..5929040 834..1172 1695 100 Plus
3L 28110227 3L 5925400..5925626 434..660 1135 100 Plus
3L 28110227 3L 5929104..5929286 1172..1354 915 100 Plus
3L 28110227 3L 5928536..5928640 731..835 525 100 Plus
3L 28110227 3L 5928222..5928297 657..732 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:50:57 has no hits.

BS15903.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:52 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 153..1497 8..1354 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:56 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 203..1552 8..1361 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:16 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 212..1547 17..1352 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:52 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
CG33523-RD 203..1552 8..1361 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:52 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
Vap-33B-RD 403..1738 17..1352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:52 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5928537..5928640 732..835 100 -> Plus
3L 5924905..5925322 17..434 100 -> Plus
3L 5925401..5925624 435..658 100 -> Plus
3L 5928224..5928296 659..731 100 -> Plus
3L 5928704..5929039 836..1171 100 -> Plus
3L 5929104..5929284 1172..1352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:16 Download gff for BS15903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5918005..5918422 17..434 100 -> Plus
arm_3L 5918501..5918724 435..658 100 -> Plus
arm_3L 5921324..5921396 659..731 100 -> Plus
arm_3L 5921637..5921740 732..835 100 -> Plus
arm_3L 5921804..5922139 836..1171 100 -> Plus
arm_3L 5922204..5922384 1172..1352 100   Plus

BS15903.pep Sequence

Translation from 16 to 1353

> BS15903.pep
MYDLDMETSFNSLWETCILRQSTGANDIDESELNQEYLKEGSVFVHNTDV
DGKPLLVFRVKMHSKSKNLDELIRIVVYWVERTQREQHLTQLTIFFDMSG
TSLASMDLEFVKRIVETFKQFYPNSLNYILVYELGWVLNAAFKVIKAVLP
PKAVEILKMISKKDINQYINKDNCLAIWGGEDNYEFSFVPEAKKVISKPV
AANAGDDDQFADKKVTFVDSAPMVLKETNINKMHTPSEGMLHINPKDFVN
FNSKNAEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEATIN
IWLKSEHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSADVEQ
HRLVCRFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQLAFT
QNLQYVTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRK*

BS15903.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Vap-33B-PF 654 CG33523-PF 54..498 1..445 2307 100 Plus
Vap-33B-PD 498 CG33523-PD 54..498 1..445 2307 100 Plus
Vap-33B-PA 234 CG33523-PA 3..234 214..445 1199 99.6 Plus
Vap-33B-PC 240 CG33523-PC 10..240 215..445 1197 100 Plus
Vap-33B-PE 285 CG33523-PE 54..271 1..218 1119 98.6 Plus