Clone Sequence Records
BS15907.3prime Sequence
840 bp (779 high quality bases) assembled on 2007-04-16
> BS15907.3prime
ATGGTCTAGAAAGCTTTTAATTTTCTTTCGATGTTTCCTTGGACTTGGAA
CGCTTTTCCGTTTCCTCCTCAGTATACTCCGAATCATTGTCAGTTTTTCG
CGAGTCTTCGCGTTCCTCGTCCTCCTTTGAAAGCTTTTCCCTGTATTTGG
CATCCTCTTTTTCCACCTCCTTGGAGTCCATTTCCCGAGCATCGGGCTCC
TTTGGCTTTTCGGTCGTGGTCGTATAGATCCTGTCGTAATCATCGGCGGA
ATCCTCGTTACTGGCCAGGCGCCCCCTGGCCTCCACGGGAGGCGGCAGAA
ACTGACCCACTTTGAGTTTGGCGGGCAGAGGCTCCAGGGATCGCAGTAGG
CCGTAGGGTTTCAAGTGGTAGATGAGATAGTCCAGGACATAGAAGGAATT
CGGAGCTACGTAGTGAAAGGAGATGGCCAAGTCCGAGCAGCAGTCGAGAC
CGTCATCCGTCTTGTAGTAAAGGTAGTTCCAGTACCAAAAGTTTTTATCC
GCCTTGGCTGGGATCAAGTGATGCTCCGGTATGAAGGGAAACATGCGACC
GCGACCGATTTCGTCCCTGGAATCGCCGGCGGTGACGTTCAGGTTCTCCA
TGCATCGCCCGATTTCGATGTCCTCGTTGACCACCGTGCCCGGCAGGCAC
ATCTTGGGATTCGGAATGCCCTCGACCACGAAGCGACGCAGGGCCTCCCG
ACTGAGTATGTAGCCCGCTCCGCCGGACATGTAGCCCTGCTTCACGAAGG
GCTTGAACTTGAATCCGAAGTGCACGGGTGTTTTCGGGATTGTACGGATA
GAGCATATACCGCATGTTCTCGATCACGGCGTAAGTGTCG
BS15907.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PB | 1353 | CG8708-RB | 531..1353 | 840..17 | 4080 | 99.8 | Minus |
| CG8708-PA | 933 | CG8708-RA | 531..919 | 840..451 | 1910 | 99.7 | Minus |
| CG9520-PB | 1167 | CG9520-RB | 624..713 | 761..672 | 150 | 86.6 | Minus |
| CG9520-PC | 1167 | CG9520-RC | 624..713 | 761..672 | 150 | 86.6 | Minus |
| CG9520-PA | 1167 | CG9520-RA | 624..713 | 761..672 | 150 | 86.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 879..1703 | 840..15 | 4105 | 99.9 | Minus |
| CG8708-RC | 1626 | CG8708-RC | 643..1467 | 840..15 | 4105 | 99.9 | Minus |
| CG8708-RB | 1674 | CG8708-RB | 691..1515 | 840..15 | 4105 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8159565..8160001 | 15..451 | 2185 | 100 | Plus |
| 2R | 25286936 | 2R | 8160054..8160442 | 451..840 | 1900 | 99.7 | Plus |
| 2L | 23513712 | 2L | 8944428..8944601 | 647..821 | 375 | 82.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:51:24 has no hits.
BS15907.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:10 Download gff for
BS15907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PB | 531..1353 | 17..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:28 Download gff for
BS15907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 691..1523 | 5..840 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:14 Download gff for
BS15907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 691..1523 | 5..840 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:14 Download gff for
BS15907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160055..8160442 | 452..840 | 99 | | Plus |
| 2R | 8159557..8160001 | 5..451 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:28 Download gff for
BS15907.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047062..4047506 | 5..451 | 99 | <- | Plus |
| arm_2R | 4047560..4047947 | 452..840 | 99 | | Plus |
BS15907.5prime Sequence
902 bp (742 high quality bases) assembled on 2007-04-16
> BS15907.5prime
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGAGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCTACCGGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTGG
TA
BS15907.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PA | 933 | CG8708-RA | 1..887 | 17..902 | 4370 | 99.7 | Plus |
| CG8708-PB | 1353 | CG8708-RB | 1..887 | 17..902 | 4370 | 99.7 | Plus |
| CG9520-PB | 1167 | CG9520-RB | 624..713 | 625..714 | 150 | 86.6 | Plus |
| CG9520-PC | 1167 | CG9520-RC | 624..713 | 625..714 | 150 | 86.6 | Plus |
| CG9520-PA | 1167 | CG9520-RA | 624..713 | 625..714 | 150 | 86.6 | Plus |
| CG9520-PB | 1167 | CG9520-RB | 338..385 | 339..386 | 140 | 91.6 | Plus |
| CG9520-PC | 1167 | CG9520-RC | 338..385 | 339..386 | 140 | 91.6 | Plus |
| CG9520-PA | 1167 | CG9520-RA | 338..385 | 339..386 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1235 | 17..902 | 4395 | 99.8 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1047 | 17..902 | 4395 | 99.8 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..999 | 59..902 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160086..8160931 | 902..58 | 4165 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:28:36 has no hits.
BS15907.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:10 Download gff for
BS15907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-PB | 1..886 | 17..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:34 Download gff for
BS15907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 150..1046 | 7..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:18 Download gff for
BS15907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 150..1046 | 7..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:18 Download gff for
BS15907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160087..8160929 | 60..901 | 99 | <- | Minus |
| 2R | 8161033..8161086 | 7..59 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:34 Download gff for
BS15907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047592..4048434 | 60..901 | 99 | <- | Minus |
| arm_2R | 4048538..4048591 | 7..59 | 92 | | Minus |
BS15907.complete Sequence
1385 bp assembled on 2007-05-07
GenBank Submission: FJ637980
> BS15907.complete
GAAGTTATCAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGC
TAACAGAAGCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCT
GGTTTGGTGGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCC
GCACGAGAGTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGG
TGGCCACCGGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGAT
CATCGCAACGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACG
CATCCTCTGCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTC
GCCATGTGAAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATG
AGTTCCGGCGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGA
GGGACGGGAGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCT
ATCATCACCACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGAC
ACTTACGCCGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCC
CGAAACACCCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGG
GCTACATGTCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGT
CGCTTCGTGGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCAC
GGTGGTCAACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACG
TCACCGCCGGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCC
TTCATACCGGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTG
GTACTGGAACTACCTTTACTACAAGACGGATGACGGTCTCGACTGCTGCT
CGGACTTGGCCATCTCCTTTCACTACGTAGCTCCGAATTCCTTCTATGTC
CTGGACTATCTCATCTACCACTTGAAACCCTACGGCCTACTGCGATCCCT
GGAGCCTCTGCCCGCCAAACTCAAAGTGGGTCAGTTTCTGCCGCCTCCCG
TGGAGGCCAGGGGGCGCCTGGCCAGTAACGAGGATTCCGCCGATGATTAC
GACAGGATCTATACGACCACGACCGAAAAGCCAAAGGAGCCCGATGCTCG
GGAAATGGACTCCAAGGAGGTGGAAAAAGAGGATGCCAAATACAGGGAAA
AGCTTTCAAAGGAGGACGAGGAACGCGAAGACTCGCGAAAAACTGACAAT
GATTCGGAGTATACTGAGGAGGAAACGGAAAAGCGTTCCAAGTCCAAGGA
AACATCGAAAGAAAATTAAAAGCTTTCTAGACCAT
BS15907.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1353 | CG8708-PD | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| CG8708-RB | 1353 | CG8708-PB | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| CG8708-RC | 1335 | CG8708-PC | 25..1335 | 59..1369 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1703 | 17..1371 | 6775 | 100 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1515 | 17..1371 | 6775 | 100 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1467 | 59..1371 | 6565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160054..8160931 | 935..58 | 4390 | 100 | Minus |
| 2R | 25286936 | 2R | 8159565..8160001 | 1371..935 | 2185 | 100 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 739..305 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 59..17 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:09:36 has no hits.
BS15907.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:53 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 1..1353 | 17..1369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:58 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 145..1518 | 7..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:57 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 161..1505 | 17..1361 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:54 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 145..1518 | 7..1381 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:13 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 161..1505 | 17..1361 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:13 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160055..8160929 | 60..934 | 100 | <- | Minus |
| 2R | 8161033..8161075 | 17..59 | 100 | | Minus |
| 2R | 8159575..8160001 | 935..1361 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:57 Download gff for
BS15907.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047080..4047506 | 935..1361 | 100 | <- | Minus |
| arm_2R | 4047560..4048434 | 60..934 | 100 | <- | Minus |
| arm_2R | 4048538..4048580 | 17..59 | 100 | | Minus |
BS15907.pep Sequence
Translation from 16 to 1368
> BS15907.pep
MTSASLLSRSLLTEAPRSKNRSVFTLIAGLVVGYCLAQIFSSIAPHESLY
PYLSRRFSDSQVATGGQLAPEQSGLKHDHRNDNVSVAEQLKKEVRILCWV
MTNPTNHKKKARHVKRTWGKRCNILLFMSSGADEELPTVKLDVGEGRENL
WAKVKEAFKYVYHHHYNDADFFYKADDDTYAVIENMRYMLYPYNPETPVH
FGFKFKPFVKQGYMSGGAGYILSREALRRFVVEGIPNPKMCLPGTVVNED
IEIGRCMENLNVTAGDSRDEIGRGRMFPFIPEHHLIPAKADKNFWYWNYL
YYKTDDGLDCCSDLAISFHYVAPNSFYVLDYLIYHLKPYGLLRSLEPLPA
KLKVGQFLPPPVEARGRLASNEDSADDYDRIYTTTTEKPKEPDAREMDSK
EVEKEDAKYREKLSKEDEEREDSRKTDNDSEYTEEETEKRSKSKETSKEN
*
BS15907.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-PD | 450 | CG8708-PD | 1..450 | 1..450 | 2401 | 100 | Plus |
| CG8708-PB | 450 | CG8708-PB | 1..450 | 1..450 | 2401 | 100 | Plus |
| CG8708-PC | 444 | CG8708-PC | 1..444 | 7..450 | 2344 | 98.4 | Plus |
| C1GalTA-PA | 388 | CG9520-PA | 1..364 | 1..359 | 1276 | 63 | Plus |
| C1GalTA-PC | 388 | CG9520-PC | 1..364 | 1..359 | 1276 | 63 | Plus |
