Clone Sequence Records
BS15908.3prime Sequence
780 bp (713 high quality bases) assembled on 2007-04-16
> BS15908.3prime
ATGGTCTAGAAAGCTTCTACGGTATCATGTTCGGCTCCTGGGCGGCGCCC
GTCGAGTACTTGGGCTTGCACACGCATCCGCTCTCCACCAGCACGTAATC
CTGGCCAGTCAGCGTCACCGGGCCGAGCGGAATGACCAGGAACAGGTAGG
GCACATAGGTTTGCGTACACTCGCCGCGGACCACATCGCACTCAGAGGAT
TCGCACACTTCGAAGACCACCTGCTGCAGGAGATCGGGGAACTTCTGGAC
GATGGTCACCGGCTGGCCGGAGGTGAGGCTCACTCCGTACATGGGCGCCG
TGGTATTGTAGCGCGTCTTGCAGAGGCGCGCCGGCGTCTCGCTCTTGCAC
TGCTGCGCCGGCGTGGCGTTCTTCAGCGAACGACCATAGCGACTGCTTCC
GACGGCCTCGTTGTTCACCTCGTCGTAGGCCCTCAGCAGAGCACTGGTGG
TTATGGCTGGGTCCAGTGTGCTGGGCAATTTGCTCTGGCGGCCACGTCGC
GAGTTTCCGTTCCAGTTGGAGAATGTGCGCGCCACGGCCGCGCTCGGATA
TGGCGCATTATTGGGACCCAGGCAGTCCAGCGAGTCCGTCAGCGCATCGC
CCGATAGGTACTTCAGGCCACGCCCACCGCTGCAGCGGCTGGGGGGCGCA
TCATCGCTGCTGTAACTTGGCCACAATGCCGCGTTTGCGCAGGTGAGTGC
GATGCTGAGGACGCAGAGAGCCGTTAGGTGTTTGACAGAACTTCTACTTA
AGCACCGGTATTCCATGTCGACTGATAACT
BS15908.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-PA | 750 | CG17672-RA | 1..750 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 1483 | CG17672-RA | 331..1083 | 766..14 | 3765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13035032..13035219 | 730..543 | 940 | 100 | Minus |
3L | 28110227 | 3L | 13035918..13036104 | 200..14 | 935 | 100 | Minus |
3L | 28110227 | 3L | 13035584..13035768 | 385..201 | 925 | 100 | Minus |
3L | 28110227 | 3L | 13035293..13035454 | 544..383 | 810 | 100 | Minus |
3L | 28110227 | 3L | 13029292..13029327 | 766..731 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 16:06:23 has no hits.
BS15908.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:10 Download gff for
BS15908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-PA | 1..750 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:35 Download gff for
BS15908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1083 | 14..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:19 Download gff for
BS15908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1083 | 14..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:19 Download gff for
BS15908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13035295..13035452 | 385..542 | 100 | -> | Minus |
3L | 13035585..13035768 | 201..384 | 100 | -> | Minus |
3L | 13035918..13036104 | 14..200 | 100 | | Minus |
3L | 13029282..13029327 | 731..774 | 91 | -> | Minus |
3L | 13035032..13035219 | 543..730 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:35 Download gff for
BS15908.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13022382..13022427 | 731..774 | 91 | -> | Minus |
arm_3L | 13028132..13028319 | 543..730 | 100 | -> | Minus |
arm_3L | 13028395..13028552 | 385..542 | 100 | -> | Minus |
arm_3L | 13028685..13028868 | 201..384 | 100 | -> | Minus |
arm_3L | 13029018..13029204 | 14..200 | 100 | | Minus |
BS15908.5prime Sequence
780 bp (780 high quality bases) assembled on 2007-04-16
> BS15908.5prime
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCC
GAACATGATACCGTAGAAGCTTTCTAGACC
BS15908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-PA | 750 | CG17672-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 1483 | CG17672-RA | 331..1083 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13035032..13035219 | 53..240 | 940 | 100 | Plus |
3L | 28110227 | 3L | 13035918..13036104 | 583..769 | 935 | 100 | Plus |
3L | 28110227 | 3L | 13035584..13035768 | 398..582 | 925 | 100 | Plus |
3L | 28110227 | 3L | 13035293..13035454 | 239..400 | 810 | 100 | Plus |
3L | 28110227 | 3L | 13029292..13029327 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:28:43 has no hits.
BS15908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:11 Download gff for
BS15908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-PA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:32 Download gff for
BS15908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1083 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:13 Download gff for
BS15908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 321..1083 | 9..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:13 Download gff for
BS15908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13029282..13029327 | 9..52 | 91 | -> | Plus |
3L | 13035032..13035219 | 53..240 | 100 | -> | Plus |
3L | 13035295..13035452 | 241..398 | 100 | -> | Plus |
3L | 13035585..13035768 | 399..582 | 100 | -> | Plus |
3L | 13035918..13036104 | 583..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:32 Download gff for
BS15908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13022382..13022427 | 9..52 | 91 | -> | Plus |
arm_3L | 13028132..13028319 | 53..240 | 100 | -> | Plus |
arm_3L | 13028395..13028552 | 241..398 | 100 | -> | Plus |
arm_3L | 13028685..13028868 | 399..582 | 100 | -> | Plus |
arm_3L | 13029018..13029204 | 583..769 | 100 | | Plus |
BS15908.complete Sequence
782 bp assembled on 2007-05-07
GenBank Submission: FJ638872
> BS15908.complete
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCC
GAACATGATACCGTAGAAGCTTTCTAGACCAT
BS15908.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 750 | CG17672-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-RA | 1483 | CG17672-RA | 331..1083 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13035032..13035219 | 53..240 | 940 | 100 | Plus |
3L | 28110227 | 3L | 13035918..13036104 | 583..769 | 935 | 100 | Plus |
3L | 28110227 | 3L | 13035584..13035768 | 398..582 | 925 | 100 | Plus |
3L | 28110227 | 3L | 13035293..13035454 | 239..400 | 810 | 100 | Plus |
3L | 28110227 | 3L | 13029292..13029327 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:40:09 has no hits.
BS15908.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:55 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 1..750 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:00 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 319..1081 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:30 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 331..1080 | 17..766 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:55 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 319..1081 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:52 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17672-RA | 331..1080 | 17..766 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:52 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13029292..13029327 | 17..52 | 100 | -> | Plus |
3L | 13035032..13035219 | 53..240 | 100 | -> | Plus |
3L | 13035295..13035452 | 241..398 | 100 | -> | Plus |
3L | 13035585..13035768 | 399..582 | 100 | -> | Plus |
3L | 13035918..13036101 | 583..766 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:30 Download gff for
BS15908.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13022392..13022427 | 17..52 | 100 | -> | Plus |
arm_3L | 13028132..13028319 | 53..240 | 100 | -> | Plus |
arm_3L | 13028395..13028552 | 241..398 | 100 | -> | Plus |
arm_3L | 13028685..13028868 | 399..582 | 100 | -> | Plus |
arm_3L | 13029018..13029201 | 583..766 | 100 | | Plus |
BS15908.pep Sequence
Translation from 16 to 765
> BS15908.pep
MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG
LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST
LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK
TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC
TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIP*
BS15908.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17672-PA | 249 | CG17672-PA | 1..249 | 1..249 | 1314 | 100 | Plus |