Clone BS15908 Report

Search the DGRC for BS15908

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptCG17672-RA
Protein status:BS15908.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15908.3prime Sequence

780 bp (713 high quality bases) assembled on 2007-04-16

> BS15908.3prime
ATGGTCTAGAAAGCTTCTACGGTATCATGTTCGGCTCCTGGGCGGCGCCC
GTCGAGTACTTGGGCTTGCACACGCATCCGCTCTCCACCAGCACGTAATC
CTGGCCAGTCAGCGTCACCGGGCCGAGCGGAATGACCAGGAACAGGTAGG
GCACATAGGTTTGCGTACACTCGCCGCGGACCACATCGCACTCAGAGGAT
TCGCACACTTCGAAGACCACCTGCTGCAGGAGATCGGGGAACTTCTGGAC
GATGGTCACCGGCTGGCCGGAGGTGAGGCTCACTCCGTACATGGGCGCCG
TGGTATTGTAGCGCGTCTTGCAGAGGCGCGCCGGCGTCTCGCTCTTGCAC
TGCTGCGCCGGCGTGGCGTTCTTCAGCGAACGACCATAGCGACTGCTTCC
GACGGCCTCGTTGTTCACCTCGTCGTAGGCCCTCAGCAGAGCACTGGTGG
TTATGGCTGGGTCCAGTGTGCTGGGCAATTTGCTCTGGCGGCCACGTCGC
GAGTTTCCGTTCCAGTTGGAGAATGTGCGCGCCACGGCCGCGCTCGGATA
TGGCGCATTATTGGGACCCAGGCAGTCCAGCGAGTCCGTCAGCGCATCGC
CCGATAGGTACTTCAGGCCACGCCCACCGCTGCAGCGGCTGGGGGGCGCA
TCATCGCTGCTGTAACTTGGCCACAATGCCGCGTTTGCGCAGGTGAGTGC
GATGCTGAGGACGCAGAGAGCCGTTAGGTGTTTGACAGAACTTCTACTTA
AGCACCGGTATTCCATGTCGACTGATAACT

BS15908.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 750 CG17672-RA 1..750 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1483 CG17672-RA 331..1083 766..14 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035032..13035219 730..543 940 100 Minus
3L 28110227 3L 13035918..13036104 200..14 935 100 Minus
3L 28110227 3L 13035584..13035768 385..201 925 100 Minus
3L 28110227 3L 13035293..13035454 544..383 810 100 Minus
3L 28110227 3L 13029292..13029327 766..731 180 100 Minus
Blast to na_te.dros performed on 2015-02-13 16:06:23 has no hits.

BS15908.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:10 Download gff for BS15908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-PA 1..750 17..766 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:35 Download gff for BS15908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1083 14..774 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:19 Download gff for BS15908.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1083 14..774 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:19 Download gff for BS15908.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 13035295..13035452 385..542 100 -> Minus
3L 13035585..13035768 201..384 100 -> Minus
3L 13035918..13036104 14..200 100   Minus
3L 13029282..13029327 731..774 91 -> Minus
3L 13035032..13035219 543..730 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:35 Download gff for BS15908.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13022382..13022427 731..774 91 -> Minus
arm_3L 13028132..13028319 543..730 100 -> Minus
arm_3L 13028395..13028552 385..542 100 -> Minus
arm_3L 13028685..13028868 201..384 100 -> Minus
arm_3L 13029018..13029204 14..200 100   Minus

BS15908.5prime Sequence

780 bp (780 high quality bases) assembled on 2007-04-16

> BS15908.5prime
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCC
GAACATGATACCGTAGAAGCTTTCTAGACC

BS15908.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 750 CG17672-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1483 CG17672-RA 331..1083 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035032..13035219 53..240 940 100 Plus
3L 28110227 3L 13035918..13036104 583..769 935 100 Plus
3L 28110227 3L 13035584..13035768 398..582 925 100 Plus
3L 28110227 3L 13035293..13035454 239..400 810 100 Plus
3L 28110227 3L 13029292..13029327 17..52 180 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:28:43 has no hits.

BS15908.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:11 Download gff for BS15908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-PA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:32 Download gff for BS15908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1083 9..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:13 Download gff for BS15908.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 321..1083 9..769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:13 Download gff for BS15908.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13029282..13029327 9..52 91 -> Plus
3L 13035032..13035219 53..240 100 -> Plus
3L 13035295..13035452 241..398 100 -> Plus
3L 13035585..13035768 399..582 100 -> Plus
3L 13035918..13036104 583..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:32 Download gff for BS15908.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13022382..13022427 9..52 91 -> Plus
arm_3L 13028132..13028319 53..240 100 -> Plus
arm_3L 13028395..13028552 241..398 100 -> Plus
arm_3L 13028685..13028868 399..582 100 -> Plus
arm_3L 13029018..13029204 583..769 100   Plus

BS15908.complete Sequence

782 bp assembled on 2007-05-07

GenBank Submission: FJ638872

> BS15908.complete
GAAGTTATCAGTCGACATGGAATACCGGTGCTTAAGTAGAAGTTCTGTCA
AACACCTAACGGCTCTCTGCGTCCTCAGCATCGCACTCACCTGCGCAAAC
GCGGCATTGTGGCCAAGTTACAGCAGCGATGATGCGCCCCCCAGCCGCTG
CAGCGGTGGGCGTGGCCTGAAGTACCTATCGGGCGATGCGCTGACGGACT
CGCTGGACTGCCTGGGTCCCAATAATGCGCCATATCCGAGCGCGGCCGTG
GCGCGCACATTCTCCAACTGGAACGGAAACTCGCGACGTGGCCGCCAGAG
CAAATTGCCCAGCACACTGGACCCAGCCATAACCACCAGTGCTCTGCTGA
GGGCCTACGACGAGGTGAACAACGAGGCCGTCGGAAGCAGTCGCTATGGT
CGTTCGCTGAAGAACGCCACGCCGGCGCAGCAGTGCAAGAGCGAGACGCC
GGCGCGCCTCTGCAAGACGCGCTACAATACCACGGCGCCCATGTACGGAG
TGAGCCTCACCTCCGGCCAGCCGGTGACCATCGTCCAGAAGTTCCCCGAT
CTCCTGCAGCAGGTGGTCTTCGAAGTGTGCGAATCCTCTGAGTGCGATGT
GGTCCGCGGCGAGTGTACGCAAACCTATGTGCCCTACCTGTTCCTGGTCA
TTCCGCTCGGCCCGGTGACGCTGACTGGCCAGGATTACGTGCTGGTGGAG
AGCGGATGCGTGTGCAAGCCCAAGTACTCGACGGGCGCCGCCCAGGAGCC
GAACATGATACCGTAGAAGCTTTCTAGACCAT

BS15908.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 750 CG17672-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-RA 1483 CG17672-RA 331..1083 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13035032..13035219 53..240 940 100 Plus
3L 28110227 3L 13035918..13036104 583..769 935 100 Plus
3L 28110227 3L 13035584..13035768 398..582 925 100 Plus
3L 28110227 3L 13035293..13035454 239..400 810 100 Plus
3L 28110227 3L 13029292..13029327 17..52 180 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:40:09 has no hits.

BS15908.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:55 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 1..750 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:00 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 319..1081 9..769 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:30 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 331..1080 17..766 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:55 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 319..1081 9..769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:52 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
CG17672-RA 331..1080 17..766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:52 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13029292..13029327 17..52 100 -> Plus
3L 13035032..13035219 53..240 100 -> Plus
3L 13035295..13035452 241..398 100 -> Plus
3L 13035585..13035768 399..582 100 -> Plus
3L 13035918..13036101 583..766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:30 Download gff for BS15908.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13022392..13022427 17..52 100 -> Plus
arm_3L 13028132..13028319 53..240 100 -> Plus
arm_3L 13028395..13028552 241..398 100 -> Plus
arm_3L 13028685..13028868 399..582 100 -> Plus
arm_3L 13029018..13029201 583..766 100   Plus

BS15908.pep Sequence

Translation from 16 to 765

> BS15908.pep
MEYRCLSRSSVKHLTALCVLSIALTCANAALWPSYSSDDAPPSRCSGGRG
LKYLSGDALTDSLDCLGPNNAPYPSAAVARTFSNWNGNSRRGRQSKLPST
LDPAITTSALLRAYDEVNNEAVGSSRYGRSLKNATPAQQCKSETPARLCK
TRYNTTAPMYGVSLTSGQPVTIVQKFPDLLQQVVFEVCESSECDVVRGEC
TQTYVPYLFLVIPLGPVTLTGQDYVLVESGCVCKPKYSTGAAQEPNMIP*

BS15908.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17672-PA 249 CG17672-PA 1..249 1..249 1314 100 Plus