Clone BS15909 Report

Search the DGRC for BS15909

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG1910-RD
Protein status:BS15909.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15909.3prime Sequence

884 bp (762 high quality bases) assembled on 2007-04-16

> BS15909.3prime
ATGGTCTAGAAAGCTTTTAGTTACACACTTTGGGCGCAGCATTCTCGCCC
ACCTCGGCGGAACTGTTGACGATCTTGGGCTCACCATTTACATTAATTTC
GGCCTTCTTGACCTCGCAGATTTCCTGTGGTTCCTTTGCAGGACTGTCGG
CAGTCTTAACCAAGGTTGTATCGATTTCCAAGGGCTTGCTGACATCATTG
GATGCGGGGGCGGTAGAAACATCAATAGGAACGGGCGTGGCGCTCTCATC
CGTATTGCTCTCTGCCTCCTTGGGTTCCGCAGAGTCCACAACCTTGCTAG
GCTCCTCTTCGCTGCTGGCGGCTTCCTTCGGCTCAGTCACCACCACGGTG
CTGGTTTCCGTAAGCTCTTCCGCGGACTCTACAGTGCTTTCGGCTTCCTT
GGGCTCGGCAGCGGGCACTTCTAAAACTGTTTCTTTGCCCTCTGTGGCCA
CTTCCACCACATCATTGCTAGACTCCGTAGTCTTTGCTGCTGCTTCTGTT
TCTGGAGCGGCAGAAACGTTTTCGATGGCTGGTGTGTCTACTTGAGCGGT
GTCCGAACTGCCCTTCGAACTTCCGTCCACTTCCATAGGTTCTGGTGTGG
GCTCCTTGGCTGGCTCATTTTGCTCCTTGGACTCCAAAACTGCTGCTGCA
TGTTCCTCTGACTTCTGTTCTGGTTCTTTTTCGTCATCTAATGCCTTTTC
TTTATTTGCGGATGGTGTGTTTTCGACGAGCGTCTCATCTTCGTCCACAT
CCATAACAGAAGCAGGTTCTTTAGGTGCAGCGGCAGTCTCTGTAGCGGCT
CCTTTCTCCGACGTTTCTCCGCTCGACTTGAGGGGCTCTTCAGCTTTTGC
ACCTCTTCGCTTGAATTCCCAGGTTCTTCTGATA

BS15909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PB 1320 CG1910-RB 452..1320 884..17 4280 99.7 Minus
CG1910-PA 1470 CG1910-RA 602..1470 884..17 4280 99.7 Minus
CG1910-PD 1320 CG1910-RD 452..1320 884..17 4280 99.7 Minus
CG1910-PC 1401 CG1910-RC 533..1401 884..17 4280 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 578..1447 884..16 4310 99.8 Minus
CG1910-RD 2698 CG1910-RD 648..1517 884..16 4310 99.8 Minus
CG1910-RA 3015 CG1910-RA 965..1834 884..16 4310 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749786..31750592 884..79 3955 99.6 Minus
3R 32079331 3R 31750644..31750713 85..16 350 100 Minus
Blast to na_te.dros performed 2015-02-11 15:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 604..575 114 86.7 Minus

BS15909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:11 Download gff for BS15909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 534..1401 17..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:01 Download gff for BS15909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 966..1840 9..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:27:46 Download gff for BS15909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 966..1840 9..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:27:46 Download gff for BS15909.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749787..31750586 85..883 99 -> Minus
3R 31750645..31750719 9..84 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:01 Download gff for BS15909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27575509..27576308 85..883 99 -> Minus
arm_3R 27576367..27576441 9..84 94   Minus

BS15909.5prime Sequence

849 bp (786 high quality bases) assembled on 2007-04-16

> BS15909.5prime
GAAGTTATCAGTCGACATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCC

BS15909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PB 1320 CG1910-RB 1..833 17..849 4165 100 Plus
CG1910-PA 1470 CG1910-RA 151..983 17..849 4165 100 Plus
CG1910-PD 1320 CG1910-RD 1..833 17..849 4165 100 Plus
CG1910-PC 1401 CG1910-RC 82..914 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 127..959 17..849 4165 100 Plus
CG1910-RD 2698 CG1910-RD 197..1029 17..849 4165 100 Plus
CG1910-RA 3015 CG1910-RA 514..1346 17..849 4165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750167 260..849 2950 100 Plus
3R 32079331 3R 31749276..31749522 17..263 1235 100 Plus
Blast to na_te.dros performed 2015-02-13 01:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 749..778 114 86.7 Plus

BS15909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:12 Download gff for BS15909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-PC 82..914 17..849 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:04 Download gff for BS15909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 514..1346 17..849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:45 Download gff for BS15909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 514..1346 17..849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:45 Download gff for BS15909.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31749276..31749521 17..262 100 -> Plus
3R 31749581..31750167 263..849 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:04 Download gff for BS15909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27574998..27575243 17..262 100 -> Plus
arm_3R 27575303..27575889 263..849 100   Plus

BS15909.complete Sequence

1352 bp assembled on 2007-05-07

GenBank Submission: FJ637981

> BS15909.complete
GAAGTTATCAGTCGACATGGGCGGAAGCCTGGAGCTGGCGGGCGGGCGGC
GGACGCGGTCTAGCACTCGAGGAACGCCGACGCGAGCCGCCGAGGCAGTG
ACGCCGCCACCCAGCAAAAAGGCGCGCACTTCGCCGGCCTCGGCCACAAA
GGCCAGTGCAGGAAAGGGACGCGGAGCACGTAAGCTAGACGTAGGCGCTG
ATGAGCCCGAGCCTGAGCTGGAGAAGGAGAAGGAGAAGGTACAGACCTCG
GTCAAGGGAAAGGGAGCTGTCAAGAAGGACAAGAAAGAGGTCAAGAAGCA
GGAGAAGGCAACTGAGAAATATGCGCCGGAGGAGGCAAAGGAAGATGTAG
CTGAGGCAAAAGAGGAAGACGCCAGTCCCGCCGGGGTCCAGGACCAACCG
GATGGTGTGGAGAATCTTCCTTCAGTGGCGGAAGCGAAGCAGAATCATGT
CGATGAAGTCAAACCAATATCAGAAGAACCTGGGAATTCAAGCGAAGAGG
TGCCAAAAGCTGAAGAGCCCCTCAAGTCGAGCGGAGAAACGTCGGAGAAT
GGAGCCGCTACAGAGACTGCCGCTGCACCTAAAGAACCTGCTTCTGTTAT
GGATGTGGACGAAGATGAGACGCTCGTCGAAAACACACCATCCGCAAATA
AAGAAAAGGCATTAGATGACGAAAAAGAACCAGAACAGAAGTCAGAGGAA
CATGCAGCAGCAGTTTTGGAGTCCAAGGAGCAAAATGAGCCAGCCAAGGA
GCCCACACCAGAACCTATGGAAGTGGACGGAAGTTCGAAGGGCAGTTCGG
ACACCGCTCAAGTAGACACACCAGCCATCGAAAACGTTTCTGCCGCTCCA
GAAACAGAAGCAGCAGCAAAGACTACGGAGTCTAGCAATGATGTGGTGGA
AGTGGCCACAGAGGGCAAAGAAACAGTTTTAGAAGTGCCCGCTGCCGAGC
CCAAGGAAGCCGAAAGCACTGTAGAGTCCGCGGAAGAGCTTACGGAAACC
AGCACCGTGGTGGTGACTGAGCCGAAGGAAGCCGCCAGCAGCGAAGAGGA
GCCTAGCAAGGTTGTGGACTCTGCGGAACCCAAGGAGGCAGAGAGCAATA
CGGATGAGAGCGCCACGCCCGTTCCTATTGATGTTTCTACCGCCCCCGCA
TCCAATGATGTCAGCAAGCCCTTGGAAATCGATACAACCTTGGTTAAGAC
TGCCGACAGTCCTGCAAAGGAACCACAGGAAATCTGCGAGGTCAAGAAGG
CCGAAATTAATGTAAATGGTGAGCCCAAGATCGTCAACAGTTCCGCCGAG
GTGGGCGAGAATGCTGCGCCCAAAGTGTGTAACTAAAAGCTTTCTAGACC
AT

BS15909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 1401 CG1910-PC 82..1401 17..1336 6600 100 Plus
CG1910-RD 1320 CG1910-PD 1..1320 17..1336 6600 100 Plus
CG1910-RA 1470 CG1910-PA 151..1470 17..1336 6600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-RC 2628 CG1910-RC 127..1447 17..1337 6605 100 Plus
CG1910-RD 2698 CG1910-RD 197..1517 17..1337 6605 100 Plus
CG1910-RA 3015 CG1910-RA 514..1834 17..1337 6605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31749578..31750592 260..1274 5060 99.9 Plus
3R 32079331 3R 31749276..31749522 17..263 1235 100 Plus
3R 32079331 3R 31750644..31750713 1268..1337 350 100 Plus
Blast to na_te.dros performed 2014-11-27 07:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 2110..2139 749..778 114 86.7 Plus

BS15909.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:56 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RD 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:01 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RD 171..1497 17..1344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:36 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 514..1831 17..1334 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:56 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RD 171..1497 17..1344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:48 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
CG1910-RA 514..1831 17..1334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:48 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31749276..31749521 17..262 100 -> Plus
3R 31749581..31750586 263..1268 100 -> Plus
3R 31750645..31750710 1269..1334 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:36 Download gff for BS15909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27574998..27575243 17..262 100 -> Plus
arm_3R 27575303..27576308 263..1268 100 -> Plus
arm_3R 27576367..27576432 1269..1334 100   Plus

BS15909.pep Sequence

Translation from 16 to 1335

> BS15909.pep
MGGSLELAGGRRTRSSTRGTPTRAAEAVTPPPSKKARTSPASATKASAGK
GRGARKLDVGADEPEPELEKEKEKVQTSVKGKGAVKKDKKEVKKQEKATE
KYAPEEAKEDVAEAKEEDASPAGVQDQPDGVENLPSVAEAKQNHVDEVKP
ISEEPGNSSEEVPKAEEPLKSSGETSENGAATETAAAPKEPASVMDVDED
ETLVENTPSANKEKALDDEKEPEQKSEEHAAAVLESKEQNEPAKEPTPEP
MEVDGSSKGSSDTAQVDTPAIENVSAAPETEAAAKTTESSNDVVEVATEG
KETVLEVPAAEPKEAESTVESAEELTETSTVVVTEPKEAASSEEEPSKVV
DSAEPKEAESNTDESATPVPIDVSTAPASNDVSKPLEIDTTLVKTADSPA
KEPQEICEVKKAEINVNGEPKIVNSSAEVGENAAPKVCN*

BS15909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1910-PC 466 CG1910-PC 28..466 1..439 2186 100 Plus
CG1910-PD 439 CG1910-PD 1..439 1..439 2186 100 Plus
CG1910-PA 489 CG1910-PA 51..489 1..439 2186 100 Plus
PPP4R2r-PD 522 CG2890-PD 127..503 56..434 203 23.3 Plus
PPP4R2r-PC 609 CG2890-PC 214..590 56..434 203 23.3 Plus