Clone BS15910 Report

Search the DGRC for BS15910

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptRpS17-RB
Protein status:BS15910.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15910.5prime Sequence

426 bp (426 high quality bases) assembled on 2007-04-16

> BS15910.5prime
GAAGTTATCAGTCGACATGGGTCGCGTACGAACCAAGACGGTGAAGAAGG
CCGCTAAGGTCATCATCGAGAAGTACTACACTCGCCTGACGTTGGACTTC
CACACCAACAAGCGCATCTGCGAGGAGGTGGCCATCATTCCCACCAAGCC
CCTGCGCAACAAGATTGCCGGCTATGTCACCCATTTGATGGGCCGCCTGC
GTCACTCCCAGGTGCGTGGTATCTCCATCAAGTTGCAGGAGGAGGAGCGT
GAGCGTCGTGACAACTACGTCCCGGCCGTCTCCGCTCTGGAGCAGGACAT
CATCGAGGTCGACGCCGACACCAAGGAGATGTTGAAGCTTCTGGACTTCC
ACAACATCCGTGGCCTGCAGCTCACCCAGCCCAACACCAACAACTTTGGT
CGTCGCAACTAAAAGCTTTCTAGACC

BS15910.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3922-PB 396 RpS17-RB 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpS17-RB 535 CG3922-RB 61..456 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9428874..9429115 412..171 1210 100 Minus
3L 28110227 3L 9429174..9429326 171..19 765 100 Minus
Blast to na_te.dros performed 2015-02-11 22:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 4758..4830 252..326 109 62.7 Plus

BS15910.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:13 Download gff for BS15910.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3922-PB 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:02 Download gff for BS15910.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 57..464 9..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:41 Download gff for BS15910.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 57..464 9..422 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:41 Download gff for BS15910.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9428866..9429114 172..422 98 <- Minus
3L 9429174..9429341 5..171 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:02 Download gff for BS15910.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9421966..9422214 172..422 98 <- Minus
arm_3L 9422274..9422441 5..171 97   Minus

BS15910.3prime Sequence

426 bp (426 high quality bases) assembled on 2007-04-16

> BS15910.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGACGACCAAAGTTGTTGGTGTTGGGC
TGGGTGAGCTGCAGGCCACGGATGTTGTGGAAGTCCAGAAGCTTCAACAT
CTCCTTGGTGTCGGCGTCGACCTCGATGATGTCCTGCTCCAGAGCGGAGA
CGGCCGGGACGTAGTTGTCACGACGCTCACGCTCCTCCTCCTGCAACTTG
ATGGAGATACCACGCACCTGGGAGTGACGCAGGCGGCCCATCAAATGGGT
GACATAGCCGGCAATCTTGTTGCGCAGGGGCTTGGTGGGAATGATGGCCA
CCTCCTCGCAGATGCGCTTGTTGGTGTGGAAGTCCAACGTCAGGCGAGTG
TAGTACTTCTCGATGATGACCTTAGCGGCCTTCTTCACCGTCTTGGTTCG
TACGCGACCCATGTCGACTGATAACT

BS15910.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3922-PB 396 RpS17-RB 1..396 412..17 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS17-RB 535 CG3922-RB 61..456 412..17 1980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9428874..9429115 17..258 1210 100 Plus
3L 28110227 3L 9429174..9429326 258..410 765 100 Plus
Blast to na_te.dros performed 2015-02-13 16:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 4758..4830 177..103 109 62.7 Minus

BS15910.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:12 Download gff for BS15910.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3922-PB 1..396 17..412 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:39 Download gff for BS15910.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 57..464 7..420 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:45 Download gff for BS15910.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 57..464 7..420 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:45 Download gff for BS15910.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9428866..9429114 7..257 98 <- Plus
3L 9429174..9429341 258..424 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:39 Download gff for BS15910.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9421966..9422214 7..257 98 <- Plus
arm_3L 9422274..9422441 258..424 97   Plus

BS15910.complete Sequence

428 bp assembled on 2007-05-07

GenBank Submission: FJ637982

> BS15910.complete
GAAGTTATCAGTCGACATGGGTCGCGTACGAACCAAGACGGTGAAGAAGG
CCGCTAAGGTCATCATCGAGAAGTACTACACTCGCCTGACGTTGGACTTC
CACACCAACAAGCGCATCTGCGAGGAGGTGGCCATCATTCCCACCAAGCC
CCTGCGCAACAAGATTGCCGGCTATGTCACCCATTTGATGGGCCGCCTGC
GTCACTCCCAGGTGCGTGGTATCTCCATCAAGTTGCAGGAGGAGGAGCGT
GAGCGTCGTGACAACTACGTCCCGGCCGTCTCCGCTCTGGAGCAGGACAT
CATCGAGGTCGACGCCGACACCAAGGAGATGTTGAAGCTTCTGGACTTCC
ACAACATCCGTGGCCTGCAGCTCACCCAGCCCAACACCAACAACTTTGGT
CGTCGCAACTAAAAGCTTTCTAGACCAT

BS15910.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
RpS17-RB 396 CG3922-PB 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
RpS17-RB 535 CG3922-RB 61..456 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9428874..9429115 412..171 1210 100 Minus
3L 28110227 3L 9429174..9429326 171..19 765 100 Minus
Blast to na_te.dros performed 2014-11-27 14:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 4758..4830 252..326 109 62.7 Plus

BS15910.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:44 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:51 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 53..460 9..422 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:28 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 61..454 17..410 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:45 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 53..460 9..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:30 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
RpS17-RB 61..454 17..410 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:30 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9428876..9429114 172..410 100 <- Minus
3L 9429174..9429327 17..171 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:28 Download gff for BS15910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9421976..9422214 172..410 100 <- Minus
arm_3L 9422274..9422427 17..171 99   Minus

BS15910.pep Sequence

Translation from 16 to 411

> BS15910.pep
MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI
AGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDA
DTKEMLKLLDFHNIRGLQLTQPNTNNFGRRN*

BS15910.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS17-PB 131 CG3922-PB 1..131 1..131 668 100 Plus