Clone Sequence Records
BS15910.5prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-16
> BS15910.5prime
GAAGTTATCAGTCGACATGGGTCGCGTACGAACCAAGACGGTGAAGAAGG
CCGCTAAGGTCATCATCGAGAAGTACTACACTCGCCTGACGTTGGACTTC
CACACCAACAAGCGCATCTGCGAGGAGGTGGCCATCATTCCCACCAAGCC
CCTGCGCAACAAGATTGCCGGCTATGTCACCCATTTGATGGGCCGCCTGC
GTCACTCCCAGGTGCGTGGTATCTCCATCAAGTTGCAGGAGGAGGAGCGT
GAGCGTCGTGACAACTACGTCCCGGCCGTCTCCGCTCTGGAGCAGGACAT
CATCGAGGTCGACGCCGACACCAAGGAGATGTTGAAGCTTCTGGACTTCC
ACAACATCCGTGGCCTGCAGCTCACCCAGCCCAACACCAACAACTTTGGT
CGTCGCAACTAAAAGCTTTCTAGACC
BS15910.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3922-PB | 396 | RpS17-RB | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS17-RB | 535 | CG3922-RB | 61..456 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9428874..9429115 | 412..171 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 9429174..9429326 | 171..19 | 765 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4758..4830 | 252..326 | 109 | 62.7 | Plus |
BS15910.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:13 Download gff for
BS15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3922-PB | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:02 Download gff for
BS15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 57..464 | 9..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:34:41 Download gff for
BS15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 57..464 | 9..422 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:34:41 Download gff for
BS15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9428866..9429114 | 172..422 | 98 | <- | Minus |
3L | 9429174..9429341 | 5..171 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:02 Download gff for
BS15910.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9421966..9422214 | 172..422 | 98 | <- | Minus |
arm_3L | 9422274..9422441 | 5..171 | 97 | | Minus |
BS15910.3prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-16
> BS15910.3prime
ATGGTCTAGAAAGCTTTTAGTTGCGACGACCAAAGTTGTTGGTGTTGGGC
TGGGTGAGCTGCAGGCCACGGATGTTGTGGAAGTCCAGAAGCTTCAACAT
CTCCTTGGTGTCGGCGTCGACCTCGATGATGTCCTGCTCCAGAGCGGAGA
CGGCCGGGACGTAGTTGTCACGACGCTCACGCTCCTCCTCCTGCAACTTG
ATGGAGATACCACGCACCTGGGAGTGACGCAGGCGGCCCATCAAATGGGT
GACATAGCCGGCAATCTTGTTGCGCAGGGGCTTGGTGGGAATGATGGCCA
CCTCCTCGCAGATGCGCTTGTTGGTGTGGAAGTCCAACGTCAGGCGAGTG
TAGTACTTCTCGATGATGACCTTAGCGGCCTTCTTCACCGTCTTGGTTCG
TACGCGACCCATGTCGACTGATAACT
BS15910.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3922-PB | 396 | RpS17-RB | 1..396 | 412..17 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS17-RB | 535 | CG3922-RB | 61..456 | 412..17 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9428874..9429115 | 17..258 | 1210 | 100 | Plus |
3L | 28110227 | 3L | 9429174..9429326 | 258..410 | 765 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 16:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4758..4830 | 177..103 | 109 | 62.7 | Minus |
BS15910.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:12 Download gff for
BS15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3922-PB | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:39 Download gff for
BS15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 57..464 | 7..420 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:25:45 Download gff for
BS15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 57..464 | 7..420 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:25:45 Download gff for
BS15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9428866..9429114 | 7..257 | 98 | <- | Plus |
3L | 9429174..9429341 | 258..424 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:39 Download gff for
BS15910.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9421966..9422214 | 7..257 | 98 | <- | Plus |
arm_3L | 9422274..9422441 | 258..424 | 97 | | Plus |
BS15910.complete Sequence
428 bp assembled on 2007-05-07
GenBank Submission: FJ637982
> BS15910.complete
GAAGTTATCAGTCGACATGGGTCGCGTACGAACCAAGACGGTGAAGAAGG
CCGCTAAGGTCATCATCGAGAAGTACTACACTCGCCTGACGTTGGACTTC
CACACCAACAAGCGCATCTGCGAGGAGGTGGCCATCATTCCCACCAAGCC
CCTGCGCAACAAGATTGCCGGCTATGTCACCCATTTGATGGGCCGCCTGC
GTCACTCCCAGGTGCGTGGTATCTCCATCAAGTTGCAGGAGGAGGAGCGT
GAGCGTCGTGACAACTACGTCCCGGCCGTCTCCGCTCTGGAGCAGGACAT
CATCGAGGTCGACGCCGACACCAAGGAGATGTTGAAGCTTCTGGACTTCC
ACAACATCCGTGGCCTGCAGCTCACCCAGCCCAACACCAACAACTTTGGT
CGTCGCAACTAAAAGCTTTCTAGACCAT
BS15910.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS17-RB | 396 | CG3922-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS17-RB | 535 | CG3922-RB | 61..456 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9428874..9429115 | 412..171 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 9429174..9429326 | 171..19 | 765 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 4758..4830 | 252..326 | 109 | 62.7 | Plus |
BS15910.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:44 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:51 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 53..460 | 9..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:28 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 61..454 | 17..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:45 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 53..460 | 9..422 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:30 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS17-RB | 61..454 | 17..410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:30 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9428876..9429114 | 172..410 | 100 | <- | Minus |
3L | 9429174..9429327 | 17..171 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:28 Download gff for
BS15910.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9421976..9422214 | 172..410 | 100 | <- | Minus |
arm_3L | 9422274..9422427 | 17..171 | 99 | | Minus |
BS15910.pep Sequence
Translation from 16 to 411
> BS15910.pep
MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKI
AGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDA
DTKEMLKLLDFHNIRGLQLTQPNTNNFGRRN*
BS15910.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS17-PB | 131 | CG3922-PB | 1..131 | 1..131 | 668 | 100 | Plus |