Clone BS15912 Report

Search the DGRC for BS15912

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:12
Vector:pDNR-Dual
Associated Gene/Transcriptspz6-RA
Protein status:BS15912.pep: full length peptide match
Sequenced Size:1310

Clone Sequence Records

BS15912.complete Sequence

1310 bp assembled on 2009-12-07

GenBank Submission: KX802134

> BS15912.complete
GAAGTTATCAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCT
TTCTGCTGCTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCA
TCTGACTACGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGA
GTCCCCGAATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTG
TAAATGCGGAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCC
GTTCACAACATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCC
GCTGGGACAAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCA
ACCAAACGCTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGAC
GATACCCTACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACA
GCTGGACAGCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTC
GCGTCCGCCGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTAC
TTCGATCCCGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAA
TAACCAGCAGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCG
ATGGCGGTGGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACC
GGAGGAGCAGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGG
TCCCATCCGGTACGAGGGTCCTCCCACTCCCTGTCCCGCCAAGGTAGAGT
ACGCTACTCCCGTCTTCGCTAAGAACTACCAAGGCGCCTGGCGTTATGTG
GTCCAGATTCCCTATGAGGGCTACTTCACCCAGACGGTGGAGGTGACGCG
TTGCATTCAGGCACGCTGTCACTACCTGGACGGCGGTTGCTTGTCGTCAC
CACGCTGGGTAAGCCTGTTGGTGGCGGAGATCTTCTACCCCAATGCGGAG
GACACAGTGCCCACCAGCTCGACCACCACTCAGGCCCCTTCTGTGCAGGA
TTTCCAGGCCTACCAGCAGTACCTGCAGAAGAGGGCAGGCGTGGCTACCG
CCTCCGACGGAACCTCGTCTGGAGCAGCCGGCCCCGCGGCGCAGGTGGAC
GCCCACTGCGATGGACACGATGAACTGGGCTGCTTCCAGGTGCGTCTCTA
CTACGACTGGTTCCTCATCCCCGGCTCTTGCAAGTGCTGGCGCCCGGACT
ACTTCGCCAAGTACGTGCGCCGGAAGTCGGTGGCCGAGTTGTGAAAGCTT
TCTAGACCAT

BS15912.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:11
Subject Length Description Subject Range Query Range Score Percent Strand
spz6-RA 1278 CG9196-PA 1..1278 17..1294 6390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
spz6-RA 1647 CG9196-RA 118..1396 17..1295 6395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24759584..24760215 664..1295 3160 100 Plus
2R 25286936 2R 24758857..24759183 337..663 1635 100 Plus
2R 25286936 2R 24758497..24758796 37..336 1500 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:28:11 has no hits.

BS15912.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:22 Download gff for BS15912.complete
Subject Subject Range Query Range Percent Splice Strand
CG9196-RA 116..1392 17..1293 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:54 Download gff for BS15912.complete
Subject Subject Range Query Range Percent Splice Strand
spz6-RA 118..1394 17..1293 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:05 Download gff for BS15912.complete
Subject Subject Range Query Range Percent Splice Strand
CG9196-RA 116..1392 17..1293 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:06 Download gff for BS15912.complete
Subject Subject Range Query Range Percent Splice Strand
spz6-RA 118..1394 17..1293 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:06 Download gff for BS15912.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24757495..24757515 17..37 100 -> Plus
2R 24758498..24758796 38..336 100 -> Plus
2R 24758857..24759183 337..663 100 -> Plus
2R 24759584..24760213 664..1293 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:54 Download gff for BS15912.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20645018..20645038 17..37 100 -> Plus
arm_2R 20646021..20646319 38..336 100 -> Plus
arm_2R 20646380..20646706 337..663 100 -> Plus
arm_2R 20647107..20647736 664..1293 100   Plus

BS15912.5prime Sequence

790 bp (759 high quality bases) assembled on 2007-04-16

> BS15912.5prime
GAAGTTATCAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCT
TTCTGCTGCTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCA
TCTGACTACGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGA
GTCCCCGAATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTG
TAAATGCGGAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCC
GTTCACAACATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCC
GCTGGGACAAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCA
ACCAAACGCTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGAC
GATACCCTACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACA
GCTGGACAGCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTC
GCGTCCGCCGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTAC
TTCGATCCCGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAA
TAACCAGCAGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCG
ATGGCGGTGGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACC
GGAGGAGCAGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGG
TCCCATCCGGTACGAGGGTCCTCCCACTCCCTGTCCCGCC

BS15912.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9196-PA 1278 CG9196-RA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
spz6-RA 1647 CG9196-RA 118..891 17..790 3870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24758857..24759183 337..663 1635 100 Plus
2R 25286936 2R 24758497..24758796 37..336 1500 100 Plus
2R 25286936 2R 24759584..24759710 664..790 635 100 Plus
Blast to na_te.dros performed on 2015-02-11 15:56:36 has no hits.

BS15912.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:14 Download gff for BS15912.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9196-PA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:04 Download gff for BS15912.5prime
Subject Subject Range Query Range Percent Splice Strand
spz6-RA 111..891 10..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:03 Download gff for BS15912.5prime
Subject Subject Range Query Range Percent Splice Strand
spz6-RA 111..891 10..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:03 Download gff for BS15912.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24758498..24758796 38..336 100 -> Plus
2R 24758857..24759183 337..663 100 -> Plus
2R 24759584..24759710 664..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:04 Download gff for BS15912.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20647107..20647233 664..790 100   Plus
arm_2R 20646021..20646319 38..336 100 -> Plus
arm_2R 20646380..20646706 337..663 100 -> Plus

BS15912.pep Sequence

Translation from 16 to 1293

> BS15912.pep
MDYRLVLKILSFLLLAQLGFSQPQQQSPSDYGEEQPPEGYYAFVESPNAV
PPKVRPPPYTFVNAECKDVAAGKKSAVSVHNICGDLNKGQIPKNPLGQNV
LGEPYPFELIRNQTLKFLSKTLPVLKADDTLPKVTQIIRDEPVEQLDSNN
IDRPYPAGGSTRVRRSLPEGVESNEYSYFDPALDEEEQHKQRDRNNQQRR
AAEERKPRKFCDGGGVFCTLYRAIQGDTGGAAPATPTAERREEVGPIRYE
GPPTPCPAKVEYATPVFAKNYQGAWRYVVQIPYEGYFTQTVEVTRCIQAR
CHYLDGGCLSSPRWVSLLVAEIFYPNAEDTVPTSSTTTQAPSVQDFQAYQ
QYLQKRAGVATASDGTSSGAAGPAAQVDAHCDGHDELGCFQVRLYYDWFL
IPGSCKCWRPDYFAKYVRRKSVAEL*

BS15912.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
spz6-PA 425 CG9196-PA 1..425 1..425 2286 100 Plus