Clone Sequence Records
BS15912.complete Sequence
1310 bp assembled on 2009-12-07
GenBank Submission: KX802134
> BS15912.complete
GAAGTTATCAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCT
TTCTGCTGCTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCA
TCTGACTACGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGA
GTCCCCGAATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTG
TAAATGCGGAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCC
GTTCACAACATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCC
GCTGGGACAAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCA
ACCAAACGCTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGAC
GATACCCTACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACA
GCTGGACAGCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTC
GCGTCCGCCGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTAC
TTCGATCCCGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAA
TAACCAGCAGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCG
ATGGCGGTGGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACC
GGAGGAGCAGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGG
TCCCATCCGGTACGAGGGTCCTCCCACTCCCTGTCCCGCCAAGGTAGAGT
ACGCTACTCCCGTCTTCGCTAAGAACTACCAAGGCGCCTGGCGTTATGTG
GTCCAGATTCCCTATGAGGGCTACTTCACCCAGACGGTGGAGGTGACGCG
TTGCATTCAGGCACGCTGTCACTACCTGGACGGCGGTTGCTTGTCGTCAC
CACGCTGGGTAAGCCTGTTGGTGGCGGAGATCTTCTACCCCAATGCGGAG
GACACAGTGCCCACCAGCTCGACCACCACTCAGGCCCCTTCTGTGCAGGA
TTTCCAGGCCTACCAGCAGTACCTGCAGAAGAGGGCAGGCGTGGCTACCG
CCTCCGACGGAACCTCGTCTGGAGCAGCCGGCCCCGCGGCGCAGGTGGAC
GCCCACTGCGATGGACACGATGAACTGGGCTGCTTCCAGGTGCGTCTCTA
CTACGACTGGTTCCTCATCCCCGGCTCTTGCAAGTGCTGGCGCCCGGACT
ACTTCGCCAAGTACGTGCGCCGGAAGTCGGTGGCCGAGTTGTGAAAGCTT
TCTAGACCAT
BS15912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz6-RA | 1278 | CG9196-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz6-RA | 1647 | CG9196-RA | 118..1396 | 17..1295 | 6395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24759584..24760215 | 664..1295 | 3160 | 100 | Plus |
2R | 25286936 | 2R | 24758857..24759183 | 337..663 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 24758497..24758796 | 37..336 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:11 has no hits.
BS15912.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:22 Download gff for
BS15912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9196-RA | 116..1392 | 17..1293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:54 Download gff for
BS15912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz6-RA | 118..1394 | 17..1293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:05 Download gff for
BS15912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9196-RA | 116..1392 | 17..1293 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:06 Download gff for
BS15912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz6-RA | 118..1394 | 17..1293 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:06 Download gff for
BS15912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24757495..24757515 | 17..37 | 100 | -> | Plus |
2R | 24758498..24758796 | 38..336 | 100 | -> | Plus |
2R | 24758857..24759183 | 337..663 | 100 | -> | Plus |
2R | 24759584..24760213 | 664..1293 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:54 Download gff for
BS15912.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20645018..20645038 | 17..37 | 100 | -> | Plus |
arm_2R | 20646021..20646319 | 38..336 | 100 | -> | Plus |
arm_2R | 20646380..20646706 | 337..663 | 100 | -> | Plus |
arm_2R | 20647107..20647736 | 664..1293 | 100 | | Plus |
BS15912.5prime Sequence
790 bp (759 high quality bases) assembled on 2007-04-16
> BS15912.5prime
GAAGTTATCAGTCGACATGGATTATCGTCTAGTGCTGAAAATTCTCAGCT
TTCTGCTGCTGGCCCAATTGGGTTTCTCCCAGCCGCAGCAGCAGTCGCCA
TCTGACTACGGTGAGGAGCAGCCTCCGGAGGGTTATTACGCCTTCGTCGA
GTCCCCGAATGCGGTGCCTCCCAAGGTCAGGCCGCCACCTTACACCTTTG
TAAATGCGGAGTGCAAGGACGTGGCCGCCGGCAAGAAGTCTGCCGTGTCC
GTTCACAACATTTGCGGAGATCTAAACAAGGGTCAGATACCCAAGAATCC
GCTGGGACAAAATGTACTCGGGGAGCCCTATCCCTTCGAACTTATTCGCA
ACCAAACGCTGAAGTTCCTTTCGAAAACTTTGCCCGTTCTAAAGGCCGAC
GATACCCTACCCAAGGTCACCCAGATCATTCGAGATGAACCCGTGGAACA
GCTGGACAGCAACAACATCGACAGGCCCTATCCCGCAGGAGGTTCCACTC
GCGTCCGCCGCAGCCTGCCGGAGGGCGTGGAGTCCAACGAGTACAGCTAC
TTCGATCCCGCCCTGGACGAGGAGGAGCAACACAAGCAAAGGGATCGGAA
TAACCAGCAGAGAAGGGCCGCCGAGGAGAGGAAGCCAAGGAAATTCTGCG
ATGGCGGTGGAGTATTTTGCACCTTATACAGGGCAATTCAGGGAGACACC
GGAGGAGCAGCCCCTGCCACGCCCACTGCGGAAAGGCGCGAGGAGGTGGG
TCCCATCCGGTACGAGGGTCCTCCCACTCCCTGTCCCGCC
BS15912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:01:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9196-PA | 1278 | CG9196-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz6-RA | 1647 | CG9196-RA | 118..891 | 17..790 | 3870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24758857..24759183 | 337..663 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 24758497..24758796 | 37..336 | 1500 | 100 | Plus |
2R | 25286936 | 2R | 24759584..24759710 | 664..790 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:56:36 has no hits.
BS15912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:14 Download gff for
BS15912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9196-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:04 Download gff for
BS15912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz6-RA | 111..891 | 10..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:03 Download gff for
BS15912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz6-RA | 111..891 | 10..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:03 Download gff for
BS15912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24758498..24758796 | 38..336 | 100 | -> | Plus |
2R | 24758857..24759183 | 337..663 | 100 | -> | Plus |
2R | 24759584..24759710 | 664..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:04 Download gff for
BS15912.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20647107..20647233 | 664..790 | 100 | | Plus |
arm_2R | 20646021..20646319 | 38..336 | 100 | -> | Plus |
arm_2R | 20646380..20646706 | 337..663 | 100 | -> | Plus |
BS15912.pep Sequence
Translation from 16 to 1293
> BS15912.pep
MDYRLVLKILSFLLLAQLGFSQPQQQSPSDYGEEQPPEGYYAFVESPNAV
PPKVRPPPYTFVNAECKDVAAGKKSAVSVHNICGDLNKGQIPKNPLGQNV
LGEPYPFELIRNQTLKFLSKTLPVLKADDTLPKVTQIIRDEPVEQLDSNN
IDRPYPAGGSTRVRRSLPEGVESNEYSYFDPALDEEEQHKQRDRNNQQRR
AAEERKPRKFCDGGGVFCTLYRAIQGDTGGAAPATPTAERREEVGPIRYE
GPPTPCPAKVEYATPVFAKNYQGAWRYVVQIPYEGYFTQTVEVTRCIQAR
CHYLDGGCLSSPRWVSLLVAEIFYPNAEDTVPTSSTTTQAPSVQDFQAYQ
QYLQKRAGVATASDGTSSGAAGPAAQVDAHCDGHDELGCFQVRLYYDWFL
IPGSCKCWRPDYFAKYVRRKSVAEL*
BS15912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz6-PA | 425 | CG9196-PA | 1..425 | 1..425 | 2286 | 100 | Plus |