Clone Sequence Records
BS15915.3prime Sequence
836 bp (725 high quality bases) assembled on 2007-04-16
> BS15915.3prime
ATGGTCTAGAAAGCTTTTACAAAATAATAAACAAAATTATCACAAACAAT
AACAGTCCGGATAGGATGAGAATGGCGGCCCACTGTCGTTTATCATTATT
CATGTGCAAGACTTTGGCAACTTTCTTCATGGTCGTATCCAACTTGGACT
CCGTGGTATCGAACTCGTTCCCAAAGTCGTCTAGCATGACGGCCTGCTCA
TCGAGCTCAACGCCAATTTGCCGCGAGACCGTCTTGAGGGTACCAATCGA
ATCGCTGATCATGTCTAGCTGCTCATCCTGTCCCTGGATCATACGCTGCT
GTATGGACACTGTTTCGCCCACGTACCTATGACTCGGACTGTCCATGCCG
CCGTGATGCGTCTGCCCATAGTGACTGGGACTGTCCAGGGCGTTCTCCAG
CTTGGAGTACTTGGTGCCGCTGTGGCGGGATGCTGCTGCCGCTGCCGCCG
ACATGGTCCCAGCTATGGTATTGGCCACCTGACTGCCGCTATTGATCAGC
GAGTTGCCGTTGGGACACTCCACGAGGTACGTGCGATCGTTGTGTGGATG
CTGATGGTACTCGTTGGAGTTGGAATTCGAATTGGGTATGGCAATGGAAT
GATTGTGATTGGGGCTGTGGCGATCGTTGTCGAGCAGCGGCTGGTGTGCG
GTGATGTCTCTGTCCCGGCTCCGGTTCAGGCTCATCTTATCCTTCATCTG
CTTGACCTCATCGCGAGTGTTGTCGATGAAGTGGCGCCGGCTGGAGAGTT
CGCGGTTGTCGATCCGAAACTTGCTTGGATTCTTCTCAACGATGCTGATA
GTGTCCTCGAGGTCCTCGAGATCCCACTCGATGCTC
BS15915.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7736-PE | 1020 | Syx6-RE | 201..1020 | 836..17 | 4100 | 100 | Minus |
CG7736-PD | 972 | Syx6-RD | 153..972 | 836..17 | 4100 | 100 | Minus |
CG7736-PB | 681 | Syx6-RB | 1..681 | 697..17 | 3405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 543..1370 | 836..9 | 4110 | 99.8 | Minus |
Syx6-RB | 1361 | CG7736-RB | 292..1119 | 836..9 | 4110 | 99.8 | Minus |
Syx6-RE | 1945 | CG7736-RE | 648..1475 | 836..9 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11220928..11221629 | 795..94 | 3510 | 100 | Minus |
2R | 25286936 | 2R | 11221783..11221868 | 94..9 | 400 | 97.7 | Minus |
2R | 25286936 | 2R | 11220581..11220621 | 836..796 | 205 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 16:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1633..1681 | 9..57 | 109 | 74 | Plus |
BS15915.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:15 Download gff for
BS15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7736-PD | 153..972 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:49 Download gff for
BS15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 648..1475 | 9..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:59 Download gff for
BS15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RE | 648..1475 | 9..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:59 Download gff for
BS15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11220581..11220615 | 802..836 | 100 | <- | Minus |
2R | 11220922..11221629 | 94..801 | 99 | -> | Minus |
2R | 11221784..11221868 | 9..93 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:49 Download gff for
BS15915.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7108086..7108120 | 802..836 | 100 | <- | Minus |
arm_2R | 7108427..7109134 | 94..801 | 99 | -> | Minus |
arm_2R | 7109289..7109373 | 9..93 | 97 | | Minus |
BS15915.5prime Sequence
845 bp (771 high quality bases) assembled on 2007-04-16
> BS15915.5prime
GAAGTTATCAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGG
ACGAGGTATTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGG
CGGGAGCTGGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGA
GCTGCGTAACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGG
ACACTATCAGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAAC
CGCGAACTCTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGT
CAAGCAGATGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACA
TCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCAC
AATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCA
TCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCA
ACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACC
ATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTC
CAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATC
ACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCC
ATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAG
CGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGC
TCGATGAGCAGGCCGTCATGCTAGACGACTTTTGGGACGAGTTCG
BS15915.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7736-PD | 972 | Syx6-RD | 1..829 | 17..845 | 4095 | 99.7 | Plus |
CG7736-PE | 1020 | Syx6-RE | 84..877 | 52..845 | 3920 | 99.7 | Plus |
CG7736-PB | 681 | Syx6-RB | 1..538 | 308..845 | 2640 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 390..1219 | 16..845 | 4120 | 99.8 | Plus |
Syx6-RB | 1361 | CG7736-RB | 175..968 | 52..845 | 3940 | 99.7 | Plus |
Syx6-RE | 1945 | CG7736-RE | 531..1324 | 52..845 | 3940 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11220928..11221563 | 210..845 | 3150 | 99.7 | Plus |
2R | 25286936 | 2R | 11220464..11220621 | 52..209 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:54:25 has no hits.
BS15915.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:16 Download gff for
BS15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7736-PD | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:05 Download gff for
BS15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 387..1219 | 13..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:32 Download gff for
BS15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 387..1219 | 13..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:32 Download gff for
BS15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11220320..11220358 | 13..51 | 97 | -> | Plus |
2R | 11220464..11220615 | 52..203 | 100 | <- | Plus |
2R | 11220922..11221563 | 204..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:05 Download gff for
BS15915.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7107825..7107863 | 13..51 | 97 | -> | Plus |
arm_2R | 7107969..7108120 | 52..203 | 100 | <- | Plus |
arm_2R | 7108427..7109068 | 204..845 | 99 | | Plus |
BS15915.complete Sequence
1004 bp assembled on 2007-05-07
GenBank Submission: FJ637984
> BS15915.complete
GAAGTTATCAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGG
ACGAGGTATTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGG
CGGGAGCTGGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGA
GCTGCGTAACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGG
ACACTATCAGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAAC
CGCGAACTCTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGT
CAAGCAGATGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACA
TCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCAC
AATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCA
TCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCA
ACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACC
ATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTC
CAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATC
ACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCC
ATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAG
CGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGC
TCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACC
ACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAAAGTCTTGCA
CATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGAC
TGTTATTGTTTGTGATAATTTTGTTTATTATTTTGTAAAAGCTTTCTAGA
CCAT
BS15915.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 972 | CG7736-PD | 1..972 | 17..988 | 4860 | 100 | Plus |
Syx6-RE | 1020 | CG7736-PE | 84..1020 | 52..988 | 4685 | 100 | Plus |
Syx6-RB | 681 | CG7736-PB | 1..681 | 308..988 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-RD | 1982 | CG7736-RD | 390..1370 | 16..996 | 4875 | 99.8 | Plus |
Syx6-RB | 1361 | CG7736-RB | 175..1119 | 52..996 | 4695 | 99.8 | Plus |
Syx6-RE | 1945 | CG7736-RE | 531..1475 | 52..996 | 4695 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11220928..11221629 | 210..911 | 3510 | 100 | Plus |
2R | 25286936 | 2R | 11220464..11220621 | 52..209 | 790 | 100 | Plus |
2R | 25286936 | 2R | 11221783..11221868 | 911..996 | 400 | 97.7 | Plus |
Blast to na_te.dros performed 2014-11-27 01:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 1633..1681 | 996..948 | 109 | 74 | Minus |
BS15915.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:44 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 1..972 | 17..988 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:45 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 385..1368 | 13..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:56 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 391..1360 | 17..986 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:44 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 385..1368 | 13..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:23 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syx6-RD | 391..1360 | 17..986 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:23 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11220324..11220358 | 17..51 | 100 | -> | Plus |
2R | 11220464..11220621 | 52..209 | 100 | -> | Plus |
2R | 11220928..11221629 | 210..911 | 100 | -> | Plus |
2R | 11221784..11221858 | 912..986 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:56 Download gff for
BS15915.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7107829..7107863 | 17..51 | 100 | -> | Plus |
arm_2R | 7107969..7108126 | 52..209 | 100 | -> | Plus |
arm_2R | 7108433..7109134 | 210..911 | 100 | -> | Plus |
arm_2R | 7109289..7109363 | 912..986 | 100 | | Plus |
BS15915.pep Sequence
Translation from 16 to 987
> BS15915.pep
MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL
RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD
KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN
DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA
LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT
LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK
RQWAAILILSGLLLFVIILFIIL*
BS15915.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syx6-PD | 323 | CG7736-PD | 1..323 | 1..323 | 1675 | 100 | Plus |
Syx6-PE | 339 | CG7736-PE | 29..339 | 13..323 | 1613 | 100 | Plus |
Syx6-PB | 226 | CG7736-PB | 1..226 | 98..323 | 1169 | 100 | Plus |