Clone BS15915 Report

Search the DGRC for BS15915

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptSyx6-RD
Protein status:BS15915.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15915.3prime Sequence

836 bp (725 high quality bases) assembled on 2007-04-16

> BS15915.3prime
ATGGTCTAGAAAGCTTTTACAAAATAATAAACAAAATTATCACAAACAAT
AACAGTCCGGATAGGATGAGAATGGCGGCCCACTGTCGTTTATCATTATT
CATGTGCAAGACTTTGGCAACTTTCTTCATGGTCGTATCCAACTTGGACT
CCGTGGTATCGAACTCGTTCCCAAAGTCGTCTAGCATGACGGCCTGCTCA
TCGAGCTCAACGCCAATTTGCCGCGAGACCGTCTTGAGGGTACCAATCGA
ATCGCTGATCATGTCTAGCTGCTCATCCTGTCCCTGGATCATACGCTGCT
GTATGGACACTGTTTCGCCCACGTACCTATGACTCGGACTGTCCATGCCG
CCGTGATGCGTCTGCCCATAGTGACTGGGACTGTCCAGGGCGTTCTCCAG
CTTGGAGTACTTGGTGCCGCTGTGGCGGGATGCTGCTGCCGCTGCCGCCG
ACATGGTCCCAGCTATGGTATTGGCCACCTGACTGCCGCTATTGATCAGC
GAGTTGCCGTTGGGACACTCCACGAGGTACGTGCGATCGTTGTGTGGATG
CTGATGGTACTCGTTGGAGTTGGAATTCGAATTGGGTATGGCAATGGAAT
GATTGTGATTGGGGCTGTGGCGATCGTTGTCGAGCAGCGGCTGGTGTGCG
GTGATGTCTCTGTCCCGGCTCCGGTTCAGGCTCATCTTATCCTTCATCTG
CTTGACCTCATCGCGAGTGTTGTCGATGAAGTGGCGCCGGCTGGAGAGTT
CGCGGTTGTCGATCCGAAACTTGCTTGGATTCTTCTCAACGATGCTGATA
GTGTCCTCGAGGTCCTCGAGATCCCACTCGATGCTC

BS15915.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7736-PE 1020 Syx6-RE 201..1020 836..17 4100 100 Minus
CG7736-PD 972 Syx6-RD 153..972 836..17 4100 100 Minus
CG7736-PB 681 Syx6-RB 1..681 697..17 3405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:13
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 543..1370 836..9 4110 99.8 Minus
Syx6-RB 1361 CG7736-RB 292..1119 836..9 4110 99.8 Minus
Syx6-RE 1945 CG7736-RE 648..1475 836..9 4110 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11220928..11221629 795..94 3510 100 Minus
2R 25286936 2R 11221783..11221868 94..9 400 97.7 Minus
2R 25286936 2R 11220581..11220621 836..796 205 100 Minus
Blast to na_te.dros performed 2015-02-13 16:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1633..1681 9..57 109 74 Plus

BS15915.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:15 Download gff for BS15915.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7736-PD 153..972 17..836 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:49 Download gff for BS15915.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 648..1475 9..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:26:59 Download gff for BS15915.3prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RE 648..1475 9..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:26:59 Download gff for BS15915.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11220581..11220615 802..836 100 <- Minus
2R 11220922..11221629 94..801 99 -> Minus
2R 11221784..11221868 9..93 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:49 Download gff for BS15915.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7108086..7108120 802..836 100 <- Minus
arm_2R 7108427..7109134 94..801 99 -> Minus
arm_2R 7109289..7109373 9..93 97   Minus

BS15915.5prime Sequence

845 bp (771 high quality bases) assembled on 2007-04-16

> BS15915.5prime
GAAGTTATCAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGG
ACGAGGTATTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGG
CGGGAGCTGGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGA
GCTGCGTAACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGG
ACACTATCAGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAAC
CGCGAACTCTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGT
CAAGCAGATGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACA
TCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCAC
AATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCA
TCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCA
ACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACC
ATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTC
CAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATC
ACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCC
ATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAG
CGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGC
TCGATGAGCAGGCCGTCATGCTAGACGACTTTTGGGACGAGTTCG

BS15915.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7736-PD 972 Syx6-RD 1..829 17..845 4095 99.7 Plus
CG7736-PE 1020 Syx6-RE 84..877 52..845 3920 99.7 Plus
CG7736-PB 681 Syx6-RB 1..538 308..845 2640 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 390..1219 16..845 4120 99.8 Plus
Syx6-RB 1361 CG7736-RB 175..968 52..845 3940 99.7 Plus
Syx6-RE 1945 CG7736-RE 531..1324 52..845 3940 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11220928..11221563 210..845 3150 99.7 Plus
2R 25286936 2R 11220464..11220621 52..209 790 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:54:25 has no hits.

BS15915.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:16 Download gff for BS15915.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7736-PD 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:05 Download gff for BS15915.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 387..1219 13..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:32 Download gff for BS15915.5prime
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 387..1219 13..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:32 Download gff for BS15915.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11220320..11220358 13..51 97 -> Plus
2R 11220464..11220615 52..203 100 <- Plus
2R 11220922..11221563 204..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:05 Download gff for BS15915.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7107825..7107863 13..51 97 -> Plus
arm_2R 7107969..7108120 52..203 100 <- Plus
arm_2R 7108427..7109068 204..845 99   Plus

BS15915.complete Sequence

1004 bp assembled on 2007-05-07

GenBank Submission: FJ637984

> BS15915.complete
GAAGTTATCAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGG
ACGAGGTATTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGG
CGGGAGCTGGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGA
GCTGCGTAACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGG
ACACTATCAGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAAC
CGCGAACTCTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGT
CAAGCAGATGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACA
TCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCAC
AATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCA
TCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCA
ACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACC
ATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTC
CAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATC
ACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCC
ATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAG
CGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGC
TCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACC
ACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAAAGTCTTGCA
CATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGAC
TGTTATTGTTTGTGATAATTTTGTTTATTATTTTGTAAAAGCTTTCTAGA
CCAT

BS15915.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 972 CG7736-PD 1..972 17..988 4860 100 Plus
Syx6-RE 1020 CG7736-PE 84..1020 52..988 4685 100 Plus
Syx6-RB 681 CG7736-PB 1..681 308..988 3405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 390..1370 16..996 4875 99.8 Plus
Syx6-RB 1361 CG7736-RB 175..1119 52..996 4695 99.8 Plus
Syx6-RE 1945 CG7736-RE 531..1475 52..996 4695 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11220928..11221629 210..911 3510 100 Plus
2R 25286936 2R 11220464..11220621 52..209 790 100 Plus
2R 25286936 2R 11221783..11221868 911..996 400 97.7 Plus
Blast to na_te.dros performed 2014-11-27 01:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 1633..1681 996..948 109 74 Minus

BS15915.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:44 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 17..988 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:45 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 385..1368 13..996 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:56 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 391..1360 17..986 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:44 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 385..1368 13..996 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:23 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 391..1360 17..986 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:23 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11220324..11220358 17..51 100 -> Plus
2R 11220464..11220621 52..209 100 -> Plus
2R 11220928..11221629 210..911 100 -> Plus
2R 11221784..11221858 912..986 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:56 Download gff for BS15915.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7107829..7107863 17..51 100 -> Plus
arm_2R 7107969..7108126 52..209 100 -> Plus
arm_2R 7108433..7109134 210..911 100 -> Plus
arm_2R 7109289..7109363 912..986 100   Plus

BS15915.pep Sequence

Translation from 16 to 987

> BS15915.pep
MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL
RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD
KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN
DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA
LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT
LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK
RQWAAILILSGLLLFVIILFIIL*

BS15915.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PD 323 CG7736-PD 1..323 1..323 1675 100 Plus
Syx6-PE 339 CG7736-PE 29..339 13..323 1613 100 Plus
Syx6-PB 226 CG7736-PB 1..226 98..323 1169 100 Plus