Clone Sequence Records
BS15916.3prime Sequence
924 bp (850 high quality bases) assembled on 2007-04-16
> BS15916.3prime
ATGGTCTAGAAAGCTTCTAAGTAAGCTTCAGTTTCTTTTGCTTTTGCTCG
AGGGCCTCGATTCTCAGTCGTTTGAACAGTTGGTGTCCCAAGTATGTGCG
GATCGGCAGGGGAGCCAATTTCATAATGGCATACTGAATGCCATGGGTCC
AGAAACCGTTGGTCTCGCTCGTTTTTCCCAGTGTAAATACGGCGGACCGG
GCAAAAGTGTATGCGTTCGGGAAAAACAGACCTCCCTGCATTACCCGATC
GGTGTAGGCATTCATTTTGGTCACCACAAAGTTGGGCATCACCAGCTGCA
CGTGGATATTGTGCTCCGCCACCTCCAGTTCCAGGGCCTTGGAGAAGTAG
GTGACAAACTTCTTGCTCGCAGCATAGACGGTCATGTTGGGCAGTGGCTG
GAGCTCAGAGGAGGATCCCAGATTGACAATGGCGCCCTTTCGGCGACCAA
TCATCTGGGGCAGGATCTTGCGGGTGAGCATGGTAACCGATCCCATGTTG
ACGGTAAGAAGGTTCCAAAGAAGATCCTCTGAGACCAGGTCCAGACTCTC
GGGGTGCTCATACATCATGCCCACGTTGTTGACCAAAATGCCAACGTCTA
TGCCCGCCAGTTCCTTTTCGATCTGATCGTACACCTCACGTCCCTTGGCG
AAATCCGCTGCAATCCACTTGGTCTTCACTTTGTACTGGCTCTCAATCTC
ATTGGTAACCGCAATGAGCTTCTCCTTCGTCCGCGAGATGAGCACCAGGT
TGATACCCTGGCGAGCCAGCTCCCTGGCGTACTCCTTGCCAATGCCATCG
GTGGCTCCAGTCACCACTGCCCACTGTCCGAACTTATCCACCAATGTCCT
TTGGCAGTGGGGCTGGAAGTAGGGTTCAGGACGGCCTTGATTATGCTGAC
CAATGACTTCAAGTTGTCGTACAG
BS15916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-PA | 978 | CG13284-RA | 70..978 | 924..17 | 4405 | 99.4 | Minus |
CG13284-PB | 1020 | CG13284-RB | 112..1020 | 924..17 | 4405 | 99.4 | Minus |
CG31809-PA | 702 | CG31809-RA | 206..323 | 513..396 | 315 | 90.6 | Minus |
CG31810-PA | 975 | CG31810-RA | 479..596 | 513..396 | 315 | 90.6 | Minus |
CG31809-PA | 702 | CG31809-RA | 516..570 | 203..149 | 200 | 94.5 | Minus |
CG31810-PA | 975 | CG31810-RA | 789..843 | 203..149 | 200 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-RD | 2178 | CG13284-RD | 339..1247 | 924..17 | 4460 | 99.6 | Minus |
CG13284-RC | 1676 | CG13284-RC | 699..1607 | 924..17 | 4460 | 99.6 | Minus |
CG13284-RE | 2109 | CG13284-RE | 223..1131 | 924..17 | 4460 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16843513..16843962 | 134..583 | 2250 | 100 | Plus |
2L | 23513712 | 2L | 16849410..16849778 | 149..517 | 810 | 81.3 | Plus |
2L | 23513712 | 2L | 16853968..16854336 | 149..517 | 810 | 81.3 | Plus |
2L | 23513712 | 2L | 16844679..16844803 | 694..818 | 625 | 100 | Plus |
2L | 23513712 | 2L | 16843278..16843397 | 17..136 | 600 | 100 | Plus |
2L | 23513712 | 2L | 16844509..16844620 | 583..694 | 560 | 100 | Plus |
2L | 23513712 | 2L | 16846751..16846859 | 817..924 | 435 | 95.4 | Plus |
2L | 23513712 | 2L | 16850158..16850282 | 694..818 | 295 | 82.4 | Plus |
2L | 23513712 | 2L | 16854716..16854840 | 694..818 | 295 | 82.4 | Plus |
2L | 23513712 | 2L | 16849984..16850093 | 583..692 | 250 | 81.8 | Plus |
2L | 23513712 | 2L | 16854542..16854651 | 583..692 | 250 | 81.8 | Plus |
2L | 23513712 | 2L | 16849173..16849264 | 45..136 | 190 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:51:57 has no hits.
BS15916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:16 Download gff for
BS15916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-PB | 112..1020 | 17..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:31 Download gff for
BS15916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 339..1250 | 11..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:36 Download gff for
BS15916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RE | 223..1134 | 11..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:36 Download gff for
BS15916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16843275..16843394 | 11..133 | 97 | <- | Plus |
2L | 16843513..16843961 | 134..582 | 100 | <- | Plus |
2L | 16844509..16844619 | 583..693 | 100 | <- | Plus |
2L | 16844679..16844801 | 694..816 | 100 | <- | Plus |
2L | 16846751..16846859 | 817..924 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:31 Download gff for
BS15916.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16843275..16843394 | 11..133 | 97 | <- | Plus |
arm_2L | 16843513..16843961 | 134..582 | 100 | <- | Plus |
arm_2L | 16844509..16844619 | 583..693 | 100 | <- | Plus |
arm_2L | 16844679..16844801 | 694..816 | 100 | <- | Plus |
arm_2L | 16846751..16846859 | 817..924 | 96 | | Plus |
BS15916.5prime Sequence
933 bp (782 high quality bases) assembled on 2007-04-16
> BS15916.5prime
GAAGTTATCAGTCGACATGCAGCCAGTTCTGGAAGTGAGCATTTACACCC
TGCTGAAGATGGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTC
GTAGGACTGCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATT
GGTCAGCATAATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGC
CAAGGACATTGGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCC
ACCGATGGCATTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTAT
CAACCTGGTGCTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCA
ATGAGATTGAGAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGAT
TTCGCCAAGGGACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGG
CATAGACGTTGGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACC
CCGAGAGTCTGGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACC
GTCAACATGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGAT
GATTGGTCGCCGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGC
TCCAGCCACTGCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTC
ACCTACTTCTCCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCA
CGTGCAGCTGGTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACA
CCGATCGGGTAATGCAGGGAGGTCTGTTTTTTCCGAACGCATACACTTTT
GCCCGGTCCGCCGTATTTACACTGGGAAAAACGAGCGAGACCAACGGTTT
CTGGGACCCTGGGCATCAGTATGCCATTATGAA
BS15916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-PB | 1020 | CG13284-RB | 1..888 | 17..904 | 4415 | 99.8 | Plus |
CG13284-PA | 978 | CG13284-RA | 1..846 | 59..904 | 4205 | 99.8 | Plus |
CG31809-PA | 702 | CG31809-RA | 206..323 | 540..657 | 315 | 90.6 | Plus |
CG31810-PA | 975 | CG31810-RA | 479..596 | 540..657 | 315 | 90.6 | Plus |
CG31809-PA | 702 | CG31809-RA | 516..571 | 850..905 | 205 | 94.6 | Plus |
CG31810-PA | 975 | CG31810-RA | 789..844 | 850..905 | 205 | 94.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-RD | 2178 | CG13284-RD | 227..1144 | 16..933 | 4500 | 99.5 | Plus |
CG13284-RB | 1316 | CG13284-RB | 227..1144 | 16..933 | 4500 | 99.5 | Plus |
CG13284-RC | 1676 | CG13284-RC | 593..1504 | 22..933 | 4470 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16843528..16843962 | 904..470 | 2160 | 99.8 | Minus |
2L | 23513712 | 2L | 16846751..16846971 | 236..16 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 16849409..16849778 | 905..536 | 800 | 81.1 | Minus |
2L | 23513712 | 2L | 16853967..16854336 | 905..536 | 800 | 81.1 | Minus |
2L | 23513712 | 2L | 16844679..16844803 | 359..235 | 625 | 100 | Minus |
2L | 23513712 | 2L | 16844509..16844620 | 470..359 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16850158..16850282 | 359..235 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16854716..16854840 | 359..235 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16849984..16850093 | 470..361 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16854542..16854651 | 470..361 | 250 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:00:33 has no hits.
BS15916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for
BS15916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-PB | 1..915 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:37 Download gff for
BS15916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 227..1144 | 16..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:07 Download gff for
BS15916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 227..1144 | 16..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:07 Download gff for
BS15916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16843513..16843961 | 471..919 | 98 | <- | Minus |
2L | 16844509..16844619 | 360..470 | 100 | <- | Minus |
2L | 16844679..16844801 | 237..359 | 100 | <- | Minus |
2L | 16846751..16846971 | 16..236 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:37 Download gff for
BS15916.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16843513..16843961 | 471..919 | 98 | <- | Minus |
arm_2L | 16844509..16844619 | 360..470 | 100 | <- | Minus |
arm_2L | 16844679..16844801 | 237..359 | 100 | <- | Minus |
arm_2L | 16846751..16846971 | 16..236 | 100 | | Minus |
BS15916.complete Sequence
1052 bp assembled on 2007-05-07
GenBank Submission: FJ637985
> BS15916.complete
GAAGTTATCAGTCGACATGCAGCCAGTTCTGGAAGTGAGCATTTACACCC
TGCTGAAGATGGCGTTCATTTGGCAGCTGATCTCGGCGGCCATCTACCTC
GTAGGACTGCTCACCATCGGTGTGTTTCTGTACGACAACCTGAAGTCATT
GGTCAGCATAATCAAGGCCGTCCTGGAACCCTACTTCCAGCCCCACTTGC
CAAGGACATTGGTGGATAAGTTCGGACAGTGGGCAGTGGTGACTGGAGCC
ACCGATGGCATTGGCAAGGAGTACGCCAGGGAGCTGGCTCGCCAGGGTAT
CAACCTGGTGCTCATCTCGCGGACGAAGGAGAAGCTCATTGCGGTTACCA
ATGAGATTGAGAGCCAGTACAAAGTGAAGACCAAGTGGATTGCAGCGGAT
TTCGCCAAGGGACGTGAGGTGTACGATCAGATCGAAAAGGAACTGGCGGG
CATAGACGTTGGCATTTTGGTCAACAACGTGGGCATGATGTATGAGCACC
CCGAGAGTCTGGACCTGGTCTCAGAGGATCTTCTTTGGAACCTTCTTACC
GTCAACATGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCCAGAT
GATTGGTCGCCGAAAGGGCGCCATTGTCAATCTGGGATCCTCCTCTGAGC
TCCAGCCACTGCCCAACATGACCGTCTATGCTGCGAGCAAGAAGTTTGTC
ACCTACTTCTCCAAGGCCCTGGAACTGGAGGTGGCGGAGCACAATATCCA
CGTGCAGCTGGTGATGCCCAACTTTGTGGTGACCAAAATGAATGCCTACA
CCGATCGGGTAATGCAGGGAGGTCTGTTTTTCCCGAACGCATACACTTTT
GCCCGGTCCGCCGTATTTACACTGGGAAAAACGAGCGAGACCAACGGTTT
CTGGACCCATGGCATTCAGTATGCCATTATGAAATTGGCTCCCCTGCCGA
TCCGCACATACTTGGGACACCAACTGTTCAAACGACTGAGAATCGAGGCC
CTCGAGCAAAAGCAAAAGAAACTGAAGCTTACTTAGAAGCTTTCTAGACC
AT
BS15916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-RD | 1020 | CG13284-PD | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG13284-RB | 1020 | CG13284-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG13284-RC | 1017 | CG13284-PC | 3..1017 | 22..1036 | 5075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-RD | 2178 | CG13284-RD | 227..1247 | 16..1036 | 5105 | 100 | Plus |
CG13284-RB | 1316 | CG13284-RB | 227..1247 | 16..1036 | 5105 | 100 | Plus |
CG13284-RC | 1676 | CG13284-RC | 593..1607 | 22..1036 | 5075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16843513..16843962 | 919..470 | 2250 | 100 | Minus |
2L | 23513712 | 2L | 16846751..16846971 | 236..16 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 16849410..16849778 | 904..536 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16853968..16854336 | 904..536 | 810 | 81.3 | Minus |
2L | 23513712 | 2L | 16844679..16844803 | 359..235 | 625 | 100 | Minus |
2L | 23513712 | 2L | 16843278..16843397 | 1036..917 | 600 | 100 | Minus |
2L | 23513712 | 2L | 16844509..16844620 | 470..359 | 560 | 100 | Minus |
2L | 23513712 | 2L | 16850158..16850282 | 359..235 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16854716..16854840 | 359..235 | 295 | 82.4 | Minus |
2L | 23513712 | 2L | 16849984..16850093 | 470..361 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16854542..16854651 | 470..361 | 250 | 81.8 | Minus |
2L | 23513712 | 2L | 16849173..16849264 | 1008..917 | 190 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:36:54 has no hits.
BS15916.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:46 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 1..1020 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:48 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 225..1248 | 16..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:43 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 228..1247 | 17..1036 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:46 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 225..1248 | 16..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:38 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13284-RB | 228..1247 | 17..1036 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:38 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16843278..16843394 | 920..1036 | 100 | <- | Minus |
2L | 16843513..16843961 | 471..919 | 100 | <- | Minus |
2L | 16844509..16844619 | 360..470 | 100 | <- | Minus |
2L | 16844679..16844801 | 237..359 | 100 | <- | Minus |
2L | 16846751..16846970 | 17..236 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:43 Download gff for
BS15916.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16843278..16843394 | 920..1036 | 100 | <- | Minus |
arm_2L | 16843513..16843961 | 471..919 | 100 | <- | Minus |
arm_2L | 16844509..16844619 | 360..470 | 100 | <- | Minus |
arm_2L | 16844679..16844801 | 237..359 | 100 | <- | Minus |
arm_2L | 16846751..16846970 | 17..236 | 100 | | Minus |
BS15916.pep Sequence
Translation from 16 to 1035
> BS15916.pep
MQPVLEVSIYTLLKMAFIWQLISAAIYLVGLLTIGVFLYDNLKSLVSIIK
AVLEPYFQPHLPRTLVDKFGQWAVVTGATDGIGKEYARELARQGINLVLI
SRTKEKLIAVTNEIESQYKVKTKWIAADFAKGREVYDQIEKELAGIDVGI
LVNNVGMMYEHPESLDLVSEDLLWNLLTVNMGSVTMLTRKILPQMIGRRK
GAIVNLGSSSELQPLPNMTVYAASKKFVTYFSKALELEVAEHNIHVQLVM
PNFVVTKMNAYTDRVMQGGLFFPNAYTFARSAVFTLGKTSETNGFWTHGI
QYAIMKLAPLPIRTYLGHQLFKRLRIEALEQKQKKLKLT*
BS15916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13284-PD | 339 | CG13284-PD | 1..339 | 1..339 | 1716 | 100 | Plus |
CG13284-PB | 339 | CG13284-PB | 1..339 | 1..339 | 1716 | 100 | Plus |
CG13284-PC | 338 | CG13284-PC | 2..338 | 3..339 | 1706 | 100 | Plus |
CG13284-PE | 325 | CG13284-PE | 1..325 | 15..339 | 1649 | 100 | Plus |
CG13284-PA | 325 | CG13284-PA | 1..325 | 15..339 | 1649 | 100 | Plus |