Clone BS15918 Report

Search the DGRC for BS15918

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG18480-RA
Protein status:BS15918.pep: full length peptide match
Sequenced Size:1685

Clone Sequence Records

BS15918.3prime Sequence

851 bp (820 high quality bases) assembled on 2007-04-16

> BS15918.3prime
ATGGTCTAGAAAGCTTTCACTTGTTATCACAATTCTCGATGACCACCACA
TCGCCGTAGTTTGGAGGCGGTGTCTCCGGTCGTATCGCCCCACTTTCAAT
CACATCCGTGTAGAATCTGGCCGTAGAAGTTGGCGGTTCGGCGGGGGAAC
TCGGTTCCCGGTCGCGACTGGTGAAGAGGTTACTCCGACTAAGGCGCCTT
ATGAGGGTGGCCGTATTCTGATTGATGGTCCGGTAGTACTGACTGCGGGC
CGGACGACCAAAGAGCCGGGACACGAAGTTGTCCTGCGGTCCGTAGGGTT
GTCGAACCACGGCATGCGATTGAGTACTACGGGGACGCTGGGGATTAGAG
CGCCTGGGGTTGCGCGTACGCTGTGGTGACCAGGTGTGTATAGTGGGTAG
GCTATCCTGCGAAGGGTTCAGAGGAGCTGAAACCCCAGTGGCCACTTCCG
GGTTACTTTTCTTTTTGCGCATCTCACAGCAACTCTTGAGGCACAGGGCA
AAGGTAATGATGAAGATGACCATGCAAACGCCCGTGGCACCGCCCACCAC
AAAGGCCAGCTTCAAATCATCCTCATCGTAGGTGTGCGTGCGTATGATTT
CATCTTCCAATTGGGAGTTTCCGCCAGCCAGGAGTTCATGACTCACACGC
TCCAAGCAAATGCGGTATCTTAGGCACAGTTTCTCCCGACTTCCCTCACA
CACATCGCTTAGCGATGACATCTGCTCGTCGTCCTGCGAGCTGTTCTGCT
CCTCACTGGAGTCCAGATCCCGCCAGACGGACAGCACGGATTGGGGTCCT
CGGGTGCTGGGCTCCAAGTACTCCATGCTTTCGAACTTCTCGTTTTTATT
A

BS15918.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-PA 1653 CG18480-RA 819..1653 851..17 4175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-RC 4656 CG18480-RC 929..1764 851..16 4180 100 Minus
CG18480-RB 2754 CG18480-RB 1010..1845 851..16 4180 100 Minus
CG18480-RA 2287 CG18480-RA 929..1764 851..16 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15631194..15631618 851..427 2125 100 Minus
2L 23513712 2L 15631682..15632095 429..16 2070 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:28:52 has no hits.

BS15918.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for BS15918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18480-PA 820..1653 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:34 Download gff for BS15918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 930..1764 16..850 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:57 Download gff for BS15918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 930..1764 16..850 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:57 Download gff for BS15918.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15631195..15631618 427..850 100 -> Minus
2L 15631685..15632095 16..426 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:34 Download gff for BS15918.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15631195..15631618 427..850 100 -> Minus
arm_2L 15631685..15632095 16..426 100   Minus

BS15918.5prime Sequence

859 bp (785 high quality bases) assembled on 2007-04-16

> BS15918.5prime
GAAGTTATCAGTCGACATGGCTCTGCAATGTGTCACAAAACCCAAAATGT
GGTTGGGCCTTAAGCAGATACTTCTCTATGTAGGCCTGTTGCTCTGCGTT
CTTCTGCAGGTCTGCAGAAGCAAGACCCAGTCGCAGATGTTTTGCCCCAC
TGTTTGCCACTGTGATCTACACGCCCAGCGCAATCGCGCAGTATGCAGCG
CAAAGCGCTTGATAAGCGCCAATATAGAAATACCTACAACGGTTGAGCTG
TTGGACCTGAGCTACAATGATATAACCACCATTGACGATGACTCCTTCAA
AACCACAATCCACCTGCTTAATCTTACGTTGGCCCACAACGCGATACACA
CACTTTATGGGGATGCCTTTGTGGAGTTGACCAGACTACGCTACTTGGAT
CTATCGTACAATCGCCTGGAGCAGATCGATGAACATATCCTGGAATCCAA
CAACCAACTGATCCACCTTAATTTGGAAGGCAACAAGTTGTCCACATTGG
GAAAAGGACCTATATTAAGAAGTCCATCGCTACGCTCTCTCAATCTGCGC
AACTCGCAGGTAAATCAACTTGGAACCCAGCTTCTGAGTGCCTTGCCTCA
ATTGCGCCAACTGGATTTGGCACAGAATCTACTGTTAACCCTGAGTCCTG
GAGATTTTCATGCACCCCGCAATCTGGCGTCACTGAATGTTGAGGAAAAT
CCCTTCAACTGCGATCGGGCGTTAGCCAAAGTGGCCACTGGATTGCGACA
GCGCGGAGTGGCTATTTTCATGAGCAACTGCATGGAAGAAGAGGTTCAGG
ATCACCAGGACGATGCGGAAGCTGTGAATTTTCCTAATAAAACGAGAAGT
TCGAAAGCA

BS15918.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-PA 1653 CG18480-RA 1..844 17..859 4180 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-RC 4656 CG18480-RC 111..954 17..859 4195 99.9 Plus
CG18480-RB 2754 CG18480-RB 192..1035 17..859 4195 99.9 Plus
CG18480-RA 2287 CG18480-RA 111..954 17..859 4195 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15630661..15631219 302..859 2745 99.8 Plus
2L 23513712 2L 15630193..15630374 17..198 910 100 Plus
2L 23513712 2L 15630436..15630543 194..301 540 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:49:26 has no hits.

BS15918.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for BS15918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18480-PA 1..843 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:42:46 Download gff for BS15918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 104..953 8..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:31 Download gff for BS15918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 104..953 8..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:31 Download gff for BS15918.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15630186..15630374 8..198 97 -> Plus
2L 15630441..15630543 199..301 100 -> Plus
2L 15630661..15631218 302..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:42:46 Download gff for BS15918.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15630186..15630374 8..198 97 -> Plus
arm_2L 15630441..15630543 199..301 100 -> Plus
arm_2L 15630661..15631218 302..858 99   Plus

BS15918.complete Sequence

1685 bp assembled on 2009-12-07

GenBank Submission: KX803540

> BS15918.complete
GAAGTTATCAGTCGACATGGCTCTGCAATGTGTCACAAAACCCAAAATGT
GGTTGGGCCTTAAGCAGATACTTCTCTATGTAGGCCTGTTGCTCTGCGTT
CTTCTGCAGGTCTGCAGAAGCAAGACCCAGTCGCAGATGTTTTGCCCCAC
TGTTTGCCACTGTGATCTACACGCCCAGCGCAATCGCGCAGTATGCAGCG
CAAAGCGCTTGATAAGCGCCAATATAGAAATACCTACAACGGTTGAGCTG
TTGGACCTGAGCTACAATGATATAACCACCATTGACGATGACTCCTTCAA
AACCACAATCCACCTGCTTAATCTTACGTTGGCCCACAACGCGATACACA
CACTTTATGGGGATGCCTTTGTGGAGTTGACCAGACTACGCTACTTGGAT
CTATCGTACAATCGCCTGGAGCAGATCGATGAACATATCCTGGAATCCAA
CAACCAACTGATCCACCTTAATTTGGAAGGCAACAAGTTGTCCACATTGG
GAAAAGGACCTATATTAAGAAGTCCATCGCTACGCTCTCTCAATCTGCGC
AACTCGCAGGTAAATCAACTTGGAACCCAGCTTCTGAGTGCCTTGCCTCA
ATTGCGCCAACTGGATTTGGCACAGAATCTACTGTTAACCCTGAGTCCTG
GAGATTTTCATGCACCCCGCAATCTGGCGTCACTGAATGTTGAGGAAAAT
CCCTTCAACTGCGATCGGGCGTTAGCCAAAGTGGCCACTGGATTGCGACA
GCGCGGAGTGGCTATTTTCATGAGCAACTGCATGGAAGAAGAGGTTCAGG
ATCACCAGGACGATGCGGAAGCTGTGAATTTTCCTAATAAAAACGAGAAG
TTCGAAAGCATGGAGTACTTGGAGCCCAGCACCCGAGGACCCCAATCCGT
GCTGTCCGTCTGGCGGGATCTGGACTCCAGTGAGGAGCAGAACAGCTCGC
AGGACGACGAGCAGATGTCATCGCTAAGCGATGTGTGTGAGGGAAGTCGG
GAGAAACTGTGCCTAAGATACCGCATTTGCTTGGAGCGTGTGAGTCATGA
ACTCCTGGCTGGCGGAAACTCCCAATTGGAAGATGAAATCATACGCACGC
ACACCTACGATGAGGATGATTTGAAGCTGGCCTTTGTGGTGGGCGGTGCC
ACGGGCGTTTGCATGGTCATCTTCATCATTACCTTTGCCCTGTGCCTCAA
GAGTTGCTGTGAGATGCGCAAAAAGAAAAGTAACCCGGAAGTGGCCACTG
GGGTTTCAGCTCCTCTGAACCCTTCGCAGGATAGCCTACCCACTATACAC
ACCTGGTCACCACAGCGTACGCGCAACCCCAGGCGCTCTAATCCCCAGCG
TCCCCGTAGTACTCAATCGCATGCCGTGGTTCGACAACCCTACGGACCGC
AGGACAACTTCGTGTCCCGGCTCTTTGGTCGTCCGGCCCGCAGTCAGTAC
TACCGGACCATCAATCAGAATACGGCCACCCTCATAAGGCGCCTTAGTCG
GAGTAACCTCTTCACCAGTCGCGACCGGGAACCGAGTTCCCCCGCCGAAC
CGCCAACTTCTACGGCCAGATTCTACACGGATGTGATTGAAAGTGGGGCG
ATACGACCGGAGACACCGCCTCCAAACTACGGCGATGTGGTGGTCATCGA
GAATTGTGATAACAAGTGAAAGCTTTCTAGACCAT

BS15918.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-RC 1653 CG18480-PC 1..1653 17..1669 8265 100 Plus
CG18480-RB 1653 CG18480-PB 1..1653 17..1669 8265 100 Plus
CG18480-RA 1653 CG18480-PA 1..1653 17..1669 8265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-RC 4656 CG18480-RC 111..1764 17..1670 8270 100 Plus
CG18480-RB 2754 CG18480-RB 192..1845 17..1670 8270 100 Plus
CG18480-RA 2287 CG18480-RA 111..1764 17..1670 8270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15630661..15631618 302..1259 4790 100 Plus
2L 23513712 2L 15631682..15632095 1257..1670 2070 100 Plus
2L 23513712 2L 15630193..15630374 17..198 910 100 Plus
2L 23513712 2L 15630436..15630543 194..301 540 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:28:24 has no hits.

BS15918.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:25 Download gff for BS15918.complete
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 110..1761 17..1668 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:01 Download gff for BS15918.complete
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 111..1762 17..1668 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:14 Download gff for BS15918.complete
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 110..1761 17..1668 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:10 Download gff for BS15918.complete
Subject Subject Range Query Range Percent Splice Strand
CG18480-RA 111..1762 17..1668 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:10 Download gff for BS15918.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15630441..15630543 199..301 100 -> Plus
2L 15630193..15630374 17..198 100 -> Plus
2L 15630661..15631618 302..1259 100 -> Plus
2L 15631685..15632093 1260..1668 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:01 Download gff for BS15918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15630193..15630374 17..198 100 -> Plus
arm_2L 15630441..15630543 199..301 100 -> Plus
arm_2L 15630661..15631618 302..1259 100 -> Plus
arm_2L 15631685..15632093 1260..1668 100   Plus

BS15918.pep Sequence

Translation from 16 to 1668

> BS15918.pep
MALQCVTKPKMWLGLKQILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCD
LHAQRNRAVCSAKRLISANIEIPTTVELLDLSYNDITTIDDDSFKTTIHL
LNLTLAHNAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEHILESNNQLIH
LNLEGNKLSTLGKGPILRSPSLRSLNLRNSQVNQLGTQLLSALPQLRQLD
LAQNLLLTLSPGDFHAPRNLASLNVEENPFNCDRALAKVATGLRQRGVAI
FMSNCMEEEVQDHQDDAEAVNFPNKNEKFESMEYLEPSTRGPQSVLSVWR
DLDSSEEQNSSQDDEQMSSLSDVCEGSREKLCLRYRICLERVSHELLAGG
NSQLEDEIIRTHTYDEDDLKLAFVVGGATGVCMVIFIITFALCLKSCCEM
RKKKSNPEVATGVSAPLNPSQDSLPTIHTWSPQRTRNPRRSNPQRPRSTQ
SHAVVRQPYGPQDNFVSRLFGRPARSQYYRTINQNTATLIRRLSRSNLFT
SRDREPSSPAEPPTSTARFYTDVIESGAIRPETPPPNYGDVVVIENCDNK
*

BS15918.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18480-PC 550 CG18480-PC 1..550 1..550 2860 100 Plus
CG18480-PB 550 CG18480-PB 1..550 1..550 2860 100 Plus
CG18480-PA 550 CG18480-PA 1..550 1..550 2860 100 Plus
sli-PE 1504 CG43758-PE 73..270 43..244 255 33.7 Plus
sli-PC 1504 CG43758-PC 73..270 43..244 255 33.7 Plus
sli-PE 1504 CG43758-PE 319..523 43..280 162 26.1 Plus