Clone Sequence Records
BS15918.3prime Sequence
851 bp (820 high quality bases) assembled on 2007-04-16
> BS15918.3prime
ATGGTCTAGAAAGCTTTCACTTGTTATCACAATTCTCGATGACCACCACA
TCGCCGTAGTTTGGAGGCGGTGTCTCCGGTCGTATCGCCCCACTTTCAAT
CACATCCGTGTAGAATCTGGCCGTAGAAGTTGGCGGTTCGGCGGGGGAAC
TCGGTTCCCGGTCGCGACTGGTGAAGAGGTTACTCCGACTAAGGCGCCTT
ATGAGGGTGGCCGTATTCTGATTGATGGTCCGGTAGTACTGACTGCGGGC
CGGACGACCAAAGAGCCGGGACACGAAGTTGTCCTGCGGTCCGTAGGGTT
GTCGAACCACGGCATGCGATTGAGTACTACGGGGACGCTGGGGATTAGAG
CGCCTGGGGTTGCGCGTACGCTGTGGTGACCAGGTGTGTATAGTGGGTAG
GCTATCCTGCGAAGGGTTCAGAGGAGCTGAAACCCCAGTGGCCACTTCCG
GGTTACTTTTCTTTTTGCGCATCTCACAGCAACTCTTGAGGCACAGGGCA
AAGGTAATGATGAAGATGACCATGCAAACGCCCGTGGCACCGCCCACCAC
AAAGGCCAGCTTCAAATCATCCTCATCGTAGGTGTGCGTGCGTATGATTT
CATCTTCCAATTGGGAGTTTCCGCCAGCCAGGAGTTCATGACTCACACGC
TCCAAGCAAATGCGGTATCTTAGGCACAGTTTCTCCCGACTTCCCTCACA
CACATCGCTTAGCGATGACATCTGCTCGTCGTCCTGCGAGCTGTTCTGCT
CCTCACTGGAGTCCAGATCCCGCCAGACGGACAGCACGGATTGGGGTCCT
CGGGTGCTGGGCTCCAAGTACTCCATGCTTTCGAACTTCTCGTTTTTATT
A
BS15918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-PA | 1653 | CG18480-RA | 819..1653 | 851..17 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-RC | 4656 | CG18480-RC | 929..1764 | 851..16 | 4180 | 100 | Minus |
CG18480-RB | 2754 | CG18480-RB | 1010..1845 | 851..16 | 4180 | 100 | Minus |
CG18480-RA | 2287 | CG18480-RA | 929..1764 | 851..16 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15631194..15631618 | 851..427 | 2125 | 100 | Minus |
2L | 23513712 | 2L | 15631682..15632095 | 429..16 | 2070 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:28:52 has no hits.
BS15918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for
BS15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-PA | 820..1653 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:34 Download gff for
BS15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 930..1764 | 16..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:54:57 Download gff for
BS15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 930..1764 | 16..850 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:54:57 Download gff for
BS15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15631195..15631618 | 427..850 | 100 | -> | Minus |
2L | 15631685..15632095 | 16..426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:34 Download gff for
BS15918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15631195..15631618 | 427..850 | 100 | -> | Minus |
arm_2L | 15631685..15632095 | 16..426 | 100 | | Minus |
BS15918.5prime Sequence
859 bp (785 high quality bases) assembled on 2007-04-16
> BS15918.5prime
GAAGTTATCAGTCGACATGGCTCTGCAATGTGTCACAAAACCCAAAATGT
GGTTGGGCCTTAAGCAGATACTTCTCTATGTAGGCCTGTTGCTCTGCGTT
CTTCTGCAGGTCTGCAGAAGCAAGACCCAGTCGCAGATGTTTTGCCCCAC
TGTTTGCCACTGTGATCTACACGCCCAGCGCAATCGCGCAGTATGCAGCG
CAAAGCGCTTGATAAGCGCCAATATAGAAATACCTACAACGGTTGAGCTG
TTGGACCTGAGCTACAATGATATAACCACCATTGACGATGACTCCTTCAA
AACCACAATCCACCTGCTTAATCTTACGTTGGCCCACAACGCGATACACA
CACTTTATGGGGATGCCTTTGTGGAGTTGACCAGACTACGCTACTTGGAT
CTATCGTACAATCGCCTGGAGCAGATCGATGAACATATCCTGGAATCCAA
CAACCAACTGATCCACCTTAATTTGGAAGGCAACAAGTTGTCCACATTGG
GAAAAGGACCTATATTAAGAAGTCCATCGCTACGCTCTCTCAATCTGCGC
AACTCGCAGGTAAATCAACTTGGAACCCAGCTTCTGAGTGCCTTGCCTCA
ATTGCGCCAACTGGATTTGGCACAGAATCTACTGTTAACCCTGAGTCCTG
GAGATTTTCATGCACCCCGCAATCTGGCGTCACTGAATGTTGAGGAAAAT
CCCTTCAACTGCGATCGGGCGTTAGCCAAAGTGGCCACTGGATTGCGACA
GCGCGGAGTGGCTATTTTCATGAGCAACTGCATGGAAGAAGAGGTTCAGG
ATCACCAGGACGATGCGGAAGCTGTGAATTTTCCTAATAAAACGAGAAGT
TCGAAAGCA
BS15918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-PA | 1653 | CG18480-RA | 1..844 | 17..859 | 4180 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-RC | 4656 | CG18480-RC | 111..954 | 17..859 | 4195 | 99.9 | Plus |
CG18480-RB | 2754 | CG18480-RB | 192..1035 | 17..859 | 4195 | 99.9 | Plus |
CG18480-RA | 2287 | CG18480-RA | 111..954 | 17..859 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15630661..15631219 | 302..859 | 2745 | 99.8 | Plus |
2L | 23513712 | 2L | 15630193..15630374 | 17..198 | 910 | 100 | Plus |
2L | 23513712 | 2L | 15630436..15630543 | 194..301 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:26 has no hits.
BS15918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for
BS15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-PA | 1..843 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:42:46 Download gff for
BS15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 104..953 | 8..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:31 Download gff for
BS15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 104..953 | 8..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:31 Download gff for
BS15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15630186..15630374 | 8..198 | 97 | -> | Plus |
2L | 15630441..15630543 | 199..301 | 100 | -> | Plus |
2L | 15630661..15631218 | 302..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:42:46 Download gff for
BS15918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15630186..15630374 | 8..198 | 97 | -> | Plus |
arm_2L | 15630441..15630543 | 199..301 | 100 | -> | Plus |
arm_2L | 15630661..15631218 | 302..858 | 99 | | Plus |
BS15918.complete Sequence
1685 bp assembled on 2009-12-07
GenBank Submission: KX803540
> BS15918.complete
GAAGTTATCAGTCGACATGGCTCTGCAATGTGTCACAAAACCCAAAATGT
GGTTGGGCCTTAAGCAGATACTTCTCTATGTAGGCCTGTTGCTCTGCGTT
CTTCTGCAGGTCTGCAGAAGCAAGACCCAGTCGCAGATGTTTTGCCCCAC
TGTTTGCCACTGTGATCTACACGCCCAGCGCAATCGCGCAGTATGCAGCG
CAAAGCGCTTGATAAGCGCCAATATAGAAATACCTACAACGGTTGAGCTG
TTGGACCTGAGCTACAATGATATAACCACCATTGACGATGACTCCTTCAA
AACCACAATCCACCTGCTTAATCTTACGTTGGCCCACAACGCGATACACA
CACTTTATGGGGATGCCTTTGTGGAGTTGACCAGACTACGCTACTTGGAT
CTATCGTACAATCGCCTGGAGCAGATCGATGAACATATCCTGGAATCCAA
CAACCAACTGATCCACCTTAATTTGGAAGGCAACAAGTTGTCCACATTGG
GAAAAGGACCTATATTAAGAAGTCCATCGCTACGCTCTCTCAATCTGCGC
AACTCGCAGGTAAATCAACTTGGAACCCAGCTTCTGAGTGCCTTGCCTCA
ATTGCGCCAACTGGATTTGGCACAGAATCTACTGTTAACCCTGAGTCCTG
GAGATTTTCATGCACCCCGCAATCTGGCGTCACTGAATGTTGAGGAAAAT
CCCTTCAACTGCGATCGGGCGTTAGCCAAAGTGGCCACTGGATTGCGACA
GCGCGGAGTGGCTATTTTCATGAGCAACTGCATGGAAGAAGAGGTTCAGG
ATCACCAGGACGATGCGGAAGCTGTGAATTTTCCTAATAAAAACGAGAAG
TTCGAAAGCATGGAGTACTTGGAGCCCAGCACCCGAGGACCCCAATCCGT
GCTGTCCGTCTGGCGGGATCTGGACTCCAGTGAGGAGCAGAACAGCTCGC
AGGACGACGAGCAGATGTCATCGCTAAGCGATGTGTGTGAGGGAAGTCGG
GAGAAACTGTGCCTAAGATACCGCATTTGCTTGGAGCGTGTGAGTCATGA
ACTCCTGGCTGGCGGAAACTCCCAATTGGAAGATGAAATCATACGCACGC
ACACCTACGATGAGGATGATTTGAAGCTGGCCTTTGTGGTGGGCGGTGCC
ACGGGCGTTTGCATGGTCATCTTCATCATTACCTTTGCCCTGTGCCTCAA
GAGTTGCTGTGAGATGCGCAAAAAGAAAAGTAACCCGGAAGTGGCCACTG
GGGTTTCAGCTCCTCTGAACCCTTCGCAGGATAGCCTACCCACTATACAC
ACCTGGTCACCACAGCGTACGCGCAACCCCAGGCGCTCTAATCCCCAGCG
TCCCCGTAGTACTCAATCGCATGCCGTGGTTCGACAACCCTACGGACCGC
AGGACAACTTCGTGTCCCGGCTCTTTGGTCGTCCGGCCCGCAGTCAGTAC
TACCGGACCATCAATCAGAATACGGCCACCCTCATAAGGCGCCTTAGTCG
GAGTAACCTCTTCACCAGTCGCGACCGGGAACCGAGTTCCCCCGCCGAAC
CGCCAACTTCTACGGCCAGATTCTACACGGATGTGATTGAAAGTGGGGCG
ATACGACCGGAGACACCGCCTCCAAACTACGGCGATGTGGTGGTCATCGA
GAATTGTGATAACAAGTGAAAGCTTTCTAGACCAT
BS15918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-RC | 1653 | CG18480-PC | 1..1653 | 17..1669 | 8265 | 100 | Plus |
CG18480-RB | 1653 | CG18480-PB | 1..1653 | 17..1669 | 8265 | 100 | Plus |
CG18480-RA | 1653 | CG18480-PA | 1..1653 | 17..1669 | 8265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-RC | 4656 | CG18480-RC | 111..1764 | 17..1670 | 8270 | 100 | Plus |
CG18480-RB | 2754 | CG18480-RB | 192..1845 | 17..1670 | 8270 | 100 | Plus |
CG18480-RA | 2287 | CG18480-RA | 111..1764 | 17..1670 | 8270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15630661..15631618 | 302..1259 | 4790 | 100 | Plus |
2L | 23513712 | 2L | 15631682..15632095 | 1257..1670 | 2070 | 100 | Plus |
2L | 23513712 | 2L | 15630193..15630374 | 17..198 | 910 | 100 | Plus |
2L | 23513712 | 2L | 15630436..15630543 | 194..301 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:28:24 has no hits.
BS15918.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:25 Download gff for
BS15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 110..1761 | 17..1668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:01 Download gff for
BS15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 111..1762 | 17..1668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:14 Download gff for
BS15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 110..1761 | 17..1668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:10 Download gff for
BS15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18480-RA | 111..1762 | 17..1668 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:10 Download gff for
BS15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15630441..15630543 | 199..301 | 100 | -> | Plus |
2L | 15630193..15630374 | 17..198 | 100 | -> | Plus |
2L | 15630661..15631618 | 302..1259 | 100 | -> | Plus |
2L | 15631685..15632093 | 1260..1668 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:01 Download gff for
BS15918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15630193..15630374 | 17..198 | 100 | -> | Plus |
arm_2L | 15630441..15630543 | 199..301 | 100 | -> | Plus |
arm_2L | 15630661..15631618 | 302..1259 | 100 | -> | Plus |
arm_2L | 15631685..15632093 | 1260..1668 | 100 | | Plus |
BS15918.pep Sequence
Translation from 16 to 1668
> BS15918.pep
MALQCVTKPKMWLGLKQILLYVGLLLCVLLQVCRSKTQSQMFCPTVCHCD
LHAQRNRAVCSAKRLISANIEIPTTVELLDLSYNDITTIDDDSFKTTIHL
LNLTLAHNAIHTLYGDAFVELTRLRYLDLSYNRLEQIDEHILESNNQLIH
LNLEGNKLSTLGKGPILRSPSLRSLNLRNSQVNQLGTQLLSALPQLRQLD
LAQNLLLTLSPGDFHAPRNLASLNVEENPFNCDRALAKVATGLRQRGVAI
FMSNCMEEEVQDHQDDAEAVNFPNKNEKFESMEYLEPSTRGPQSVLSVWR
DLDSSEEQNSSQDDEQMSSLSDVCEGSREKLCLRYRICLERVSHELLAGG
NSQLEDEIIRTHTYDEDDLKLAFVVGGATGVCMVIFIITFALCLKSCCEM
RKKKSNPEVATGVSAPLNPSQDSLPTIHTWSPQRTRNPRRSNPQRPRSTQ
SHAVVRQPYGPQDNFVSRLFGRPARSQYYRTINQNTATLIRRLSRSNLFT
SRDREPSSPAEPPTSTARFYTDVIESGAIRPETPPPNYGDVVVIENCDNK
*
BS15918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18480-PC | 550 | CG18480-PC | 1..550 | 1..550 | 2860 | 100 | Plus |
CG18480-PB | 550 | CG18480-PB | 1..550 | 1..550 | 2860 | 100 | Plus |
CG18480-PA | 550 | CG18480-PA | 1..550 | 1..550 | 2860 | 100 | Plus |
sli-PE | 1504 | CG43758-PE | 73..270 | 43..244 | 255 | 33.7 | Plus |
sli-PC | 1504 | CG43758-PC | 73..270 | 43..244 | 255 | 33.7 | Plus |
sli-PE | 1504 | CG43758-PE | 319..523 | 43..280 | 162 | 26.1 | Plus |