Clone Sequence Records
BS15919.3prime Sequence
895 bp (827 high quality bases) assembled on 2007-04-16
> BS15919.3prime
ATGGTCTAGAAAGCTTTTAGAGTCCAGTGGTGGAGGTCCTGGCACAGGAC
GTCTTGCGCGGCGGCGGCAAATCAGATGTGTAGTTCTGGTATCGAGAGGA
GCAGTTAACGGCCTTGTAGAAGGCCTTCCGGAAATTCTCGGAGAGGAAGG
CGTAGAGCAGCGGATTGATACACGAGCTGCTGTAGGCCAGAGTCTGGGCG
GTGACCTGGATGACTAGCTTGGTGAGGGTGTTCGTCTCGATGACATCCAG
TGACTTGAGCAGCAGGATGAGCTGGACAGGCAGCCAGAGCGAGGCGAAGG
CGATGACCACCACGACGACGAGTCGGGTGACCCGCTTGCGACCGCGCTGC
GACTCCTTGGACATGCGGACGCCGGTTCCCTGGCGCCAGAGCCGCATGAT
CATGCGCATGTAGAGACCGCTGATGATCATCAGGGGCAGCAGGTAGGAGC
TGATGAAGAAGGTGACCTGGTAGGTGCGCGGACCAAGGAAGTCGTTCGTC
GTGAAGGTGCACATGCCGTAGGTGATGTTCTTCTTTGCATCGTAATCCAC
CACCACGTCGTGGGTGAAGGCCACTGGCACCGAAACGACCAGCACCACGA
TCCACAGAGTCACGATGGCAATCAGGGTAATGTTCTCCGTCCTCATCATC
CGCGAGCGAATGGGATGAACCACCGCCAGGAACCGATCGATGGACATCAG
CACCAGCGTGTAAATGGAGGCGAAGGCGGTCACCACAATCAGGTACTGGA
CACTGCGGCACCAGAACCTTCCATATGGCCAGTAGTACACCATGTAATCG
GTGGCCGTGAAGGGAATGCAGAGGATTACGAACATCAGATCAGCGGCAGC
CAGATTGAACATCATCAAGTTGGTGGTGGAGCGCATGTTGTTGTT
BS15919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10001-PA | 1074 | AR-2-RA | 196..1074 | 895..17 | 4320 | 99.6 | Minus |
CG2872-PC | 1155 | AlstR-RC | 485..537 | 714..662 | 140 | 90.5 | Minus |
CG2872-PB | 1185 | AlstR-RB | 485..537 | 714..662 | 140 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-R2-RC | 1994 | CG10001-RC | 953..1831 | 895..17 | 4350 | 99.7 | Minus |
AstA-R2-RA | 2273 | CG10001-RA | 953..1831 | 895..17 | 4350 | 99.7 | Minus |
AstA-R2-RB | 2077 | CG10001-RB | 953..1736 | 895..112 | 3875 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28743484..28743830 | 549..895 | 1690 | 99.1 | Plus |
3R | 32079331 | 3R | 28740706..28740985 | 272..551 | 1400 | 100 | Plus |
3R | 32079331 | 3R | 28740471..28740633 | 112..274 | 815 | 100 | Plus |
3R | 32079331 | 3R | 28737551..28737648 | 17..114 | 490 | 100 | Plus |
X | 23542271 | X | 3655852..3655904 | 714..662 | 190 | 90.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:56:49 has no hits.
BS15919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for
BS15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10001-PA | 196..1074 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:06 Download gff for
BS15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AR-2-RA | 953..1831 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:19 Download gff for
BS15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstA-R2-RA | 953..1831 | 17..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:19 Download gff for
BS15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28740706..28740984 | 272..550 | 100 | <- | Plus |
3R | 28743486..28743830 | 551..895 | 99 | | Plus |
3R | 28737551..28737646 | 17..112 | 100 | <- | Plus |
3R | 28740472..28740630 | 113..271 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:06 Download gff for
BS15919.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24563273..24563368 | 17..112 | 100 | <- | Plus |
arm_3R | 24566194..24566352 | 113..271 | 100 | <- | Plus |
arm_3R | 24566428..24566706 | 272..550 | 100 | <- | Plus |
arm_3R | 24569208..24569552 | 551..895 | 99 | | Plus |
BS15919.5prime Sequence
873 bp (846 high quality bases) assembled on 2007-04-16
> BS15919.5prime
GAAGTTATCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCC
TAAATGCAACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAA
GAGTGGCTGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTT
CGGCGTCATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGG
TGGTGGTCTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTC
AATCTGGCTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCAC
GGCCACCGATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCC
GCAGTGTCCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACG
CTGGTGCTGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCG
CTCGCGGATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTC
TGTGGATCGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGAC
GTGGTGGTGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCAC
CTTCACGACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCT
TCATCAGCTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATG
CGCATGATCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAA
GGAGTCGCAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGG
TCATCGCCTTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTN
CAGTCACTGGATGTCATCGAGAC
BS15919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10001-PA | 1074 | AR-2-RA | 1..857 | 17..873 | 4241 | 99.7 | Plus |
CG2872-PC | 1155 | AlstR-RC | 485..537 | 393..445 | 140 | 90.5 | Plus |
CG2872-PB | 1185 | AlstR-RB | 485..537 | 393..445 | 140 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:28:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-R2-RC | 1994 | CG10001-RC | 756..1614 | 15..873 | 4269 | 99.8 | Plus |
AstA-R2-RB | 2077 | CG10001-RB | 756..1614 | 15..873 | 4269 | 99.8 | Plus |
AstA-R2-RA | 2273 | CG10001-RA | 756..1614 | 15..873 | 4269 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28743484..28744027 | 558..15 | 2720 | 100 | Minus |
3R | 32079331 | 3R | 28740706..28740985 | 835..556 | 1400 | 100 | Minus |
X | 23542271 | X | 3655852..3655904 | 393..445 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:28:44 has no hits.
BS15919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:18 Download gff for
BS15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10001-PA | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:36 Download gff for
BS15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AR-2-RA | 751..1614 | 10..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:19 Download gff for
BS15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstA-R2-RA | 751..1614 | 10..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:19 Download gff for
BS15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28740593..28740630 | 836..873 | 94 | <- | Minus |
3R | 28740706..28740984 | 557..835 | 100 | <- | Minus |
3R | 28743486..28744032 | 10..556 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:36 Download gff for
BS15919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24566315..24566352 | 836..873 | 94 | <- | Minus |
arm_3R | 24566428..24566706 | 557..835 | 100 | <- | Minus |
arm_3R | 24569208..24569754 | 10..556 | 99 | | Minus |
BS15919.complete Sequence
1106 bp assembled on 2007-05-07
GenBank Submission: FJ637986
> BS15919.complete
GAAGTTATCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCC
TAAATGCAACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAA
GAGTGGCTGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTT
CGGCGTCATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGG
TGGTGGTCTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTC
AATCTGGCTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCAC
GGCCACCGATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCC
GCAGTGTCCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACG
CTGGTGCTGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCG
CTCGCGGATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTC
TGTGGATCGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGAC
GTGGTGGTGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCAC
CTTCACGACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCT
TCATCAGCTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATG
CGCATGATCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAA
GGAGTCGCAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGG
TCATCGCCTTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTC
AAGTCACTGGATGTCATCGAGACGAACACCCTCACCAAGCTAGTCATCCA
GGTCACCGCCCAGACTCTGGCCTACAGCAGCTCGTGTATCAATCCGCTGC
TCTACGCCTTCCTCTCCGAGAATTTCCGGAAGGCCTTCTACAAGGCCGTT
AACTGCTCCTCTCGATACCAGAACTACACATCTGATTTGCCGCCGCCGCG
CAAGACGTCCTGTGCCAGGACCTCCACCACTGGACTCTAAAAGCTTTCTA
GACCAT
BS15919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-R2-RC | 1074 | CG10001-PC | 1..1074 | 17..1090 | 5370 | 100 | Plus |
AstA-R2-RA | 1074 | CG10001-PA | 1..1074 | 17..1090 | 5370 | 100 | Plus |
AstA-R2-RB | 1053 | CG10001-PB | 1..979 | 17..995 | 4895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-R2-RC | 1994 | CG10001-RC | 756..1831 | 15..1090 | 5380 | 100 | Plus |
AstA-R2-RA | 2273 | CG10001-RA | 756..1831 | 15..1090 | 5380 | 100 | Plus |
AstA-R2-RB | 2077 | CG10001-RB | 756..1736 | 15..995 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28743484..28744027 | 558..15 | 2720 | 100 | Minus |
3R | 32079331 | 3R | 28740706..28740985 | 835..556 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 28740471..28740633 | 995..833 | 815 | 100 | Minus |
3R | 32079331 | 3R | 28737551..28737648 | 1090..993 | 490 | 100 | Minus |
X | 23542271 | X | 3655852..3655904 | 393..445 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:43:24 has no hits.
BS15919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:47 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AR-2-RA | 1..1074 | 17..1090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:50 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AR-2-RA | 102..1182 | 10..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:28 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AR-2-RA | 758..1829 | 17..1088 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:47 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AR-2-RA | 102..1182 | 10..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:06 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AstA-R2-RA | 758..1829 | 17..1088 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:06 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28737553..28737646 | 995..1088 | 100 | <- | Minus |
3R | 28740472..28740630 | 836..994 | 100 | <- | Minus |
3R | 28740706..28740984 | 557..835 | 100 | <- | Minus |
3R | 28743486..28744025 | 17..556 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:28 Download gff for
BS15919.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24563275..24563368 | 995..1088 | 100 | <- | Minus |
arm_3R | 24566194..24566352 | 836..994 | 100 | <- | Minus |
arm_3R | 24566428..24566706 | 557..835 | 100 | <- | Minus |
arm_3R | 24569208..24569747 | 17..556 | 100 | | Minus |
BS15919.pep Sequence
Translation from 16 to 1089
> BS15919.pep
MENTTMLANISLNATRNEENITSFFTDEEWLAINGTLPWIVGFFFGVIAI
TGFFGNLLVILVVVFNNNMRSTTNLMIVNLAAADLMFVILCIPFTATDYM
VYYWPYGRFWCRSVQYLIVVTAFASIYTLVLMSIDRFLAVVHPIRSRMMR
TENITLIAIVTLWIVVLVVSVPVAFTHDVVVDYDAKKNITYGMCTFTTND
FLGPRTYQVTFFISSYLLPLMIISGLYMRMIMRLWRQGTGVRMSKESQRG
RKRVTRLVVVVVIAFASLWLPVQLILLLKSLDVIETNTLTKLVIQVTAQT
LAYSSSCINPLLYAFLSENFRKAFYKAVNCSSRYQNYTSDLPPPRKTSCA
RTSTTGL*
BS15919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AstA-R2-PC | 357 | CG10001-PC | 1..357 | 1..357 | 1826 | 100 | Plus |
AstA-R2-PA | 357 | CG10001-PA | 1..357 | 1..357 | 1826 | 100 | Plus |
AstA-R2-PB | 350 | CG10001-PB | 1..338 | 1..339 | 1661 | 97.1 | Plus |
AstA-R1-PD | 394 | CG2872-PD | 63..380 | 27..355 | 816 | 49.5 | Plus |
AstA-R1-PB | 394 | CG2872-PB | 63..380 | 27..355 | 816 | 49.5 | Plus |