Clone BS15919 Report

Search the DGRC for BS15919

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptAstA-R2-RA
Protein status:BS15919.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15919.3prime Sequence

895 bp (827 high quality bases) assembled on 2007-04-16

> BS15919.3prime
ATGGTCTAGAAAGCTTTTAGAGTCCAGTGGTGGAGGTCCTGGCACAGGAC
GTCTTGCGCGGCGGCGGCAAATCAGATGTGTAGTTCTGGTATCGAGAGGA
GCAGTTAACGGCCTTGTAGAAGGCCTTCCGGAAATTCTCGGAGAGGAAGG
CGTAGAGCAGCGGATTGATACACGAGCTGCTGTAGGCCAGAGTCTGGGCG
GTGACCTGGATGACTAGCTTGGTGAGGGTGTTCGTCTCGATGACATCCAG
TGACTTGAGCAGCAGGATGAGCTGGACAGGCAGCCAGAGCGAGGCGAAGG
CGATGACCACCACGACGACGAGTCGGGTGACCCGCTTGCGACCGCGCTGC
GACTCCTTGGACATGCGGACGCCGGTTCCCTGGCGCCAGAGCCGCATGAT
CATGCGCATGTAGAGACCGCTGATGATCATCAGGGGCAGCAGGTAGGAGC
TGATGAAGAAGGTGACCTGGTAGGTGCGCGGACCAAGGAAGTCGTTCGTC
GTGAAGGTGCACATGCCGTAGGTGATGTTCTTCTTTGCATCGTAATCCAC
CACCACGTCGTGGGTGAAGGCCACTGGCACCGAAACGACCAGCACCACGA
TCCACAGAGTCACGATGGCAATCAGGGTAATGTTCTCCGTCCTCATCATC
CGCGAGCGAATGGGATGAACCACCGCCAGGAACCGATCGATGGACATCAG
CACCAGCGTGTAAATGGAGGCGAAGGCGGTCACCACAATCAGGTACTGGA
CACTGCGGCACCAGAACCTTCCATATGGCCAGTAGTACACCATGTAATCG
GTGGCCGTGAAGGGAATGCAGAGGATTACGAACATCAGATCAGCGGCAGC
CAGATTGAACATCATCAAGTTGGTGGTGGAGCGCATGTTGTTGTT

BS15919.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10001-PA 1074 AR-2-RA 196..1074 895..17 4320 99.6 Minus
CG2872-PC 1155 AlstR-RC 485..537 714..662 140 90.5 Minus
CG2872-PB 1185 AlstR-RB 485..537 714..662 140 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-R2-RC 1994 CG10001-RC 953..1831 895..17 4350 99.7 Minus
AstA-R2-RA 2273 CG10001-RA 953..1831 895..17 4350 99.7 Minus
AstA-R2-RB 2077 CG10001-RB 953..1736 895..112 3875 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28743484..28743830 549..895 1690 99.1 Plus
3R 32079331 3R 28740706..28740985 272..551 1400 100 Plus
3R 32079331 3R 28740471..28740633 112..274 815 100 Plus
3R 32079331 3R 28737551..28737648 17..114 490 100 Plus
X 23542271 X 3655852..3655904 714..662 190 90.6 Minus
Blast to na_te.dros performed on 2015-02-11 15:56:49 has no hits.

BS15919.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:17 Download gff for BS15919.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10001-PA 196..1074 17..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:06 Download gff for BS15919.3prime
Subject Subject Range Query Range Percent Splice Strand
AR-2-RA 953..1831 17..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:19 Download gff for BS15919.3prime
Subject Subject Range Query Range Percent Splice Strand
AstA-R2-RA 953..1831 17..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:19 Download gff for BS15919.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28740706..28740984 272..550 100 <- Plus
3R 28743486..28743830 551..895 99   Plus
3R 28737551..28737646 17..112 100 <- Plus
3R 28740472..28740630 113..271 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:06 Download gff for BS15919.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24563273..24563368 17..112 100 <- Plus
arm_3R 24566194..24566352 113..271 100 <- Plus
arm_3R 24566428..24566706 272..550 100 <- Plus
arm_3R 24569208..24569552 551..895 99   Plus

BS15919.5prime Sequence

873 bp (846 high quality bases) assembled on 2007-04-16

> BS15919.5prime
GAAGTTATCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCC
TAAATGCAACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAA
GAGTGGCTGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTT
CGGCGTCATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGG
TGGTGGTCTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTC
AATCTGGCTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCAC
GGCCACCGATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCC
GCAGTGTCCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACG
CTGGTGCTGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCG
CTCGCGGATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTC
TGTGGATCGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGAC
GTGGTGGTGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCAC
CTTCACGACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCT
TCATCAGCTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATG
CGCATGATCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAA
GGAGTCGCAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGG
TCATCGCCTTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTN
CAGTCACTGGATGTCATCGAGAC

BS15919.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10001-PA 1074 AR-2-RA 1..857 17..873 4241 99.7 Plus
CG2872-PC 1155 AlstR-RC 485..537 393..445 140 90.5 Plus
CG2872-PB 1185 AlstR-RB 485..537 393..445 140 90.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-R2-RC 1994 CG10001-RC 756..1614 15..873 4269 99.8 Plus
AstA-R2-RB 2077 CG10001-RB 756..1614 15..873 4269 99.8 Plus
AstA-R2-RA 2273 CG10001-RA 756..1614 15..873 4269 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28743484..28744027 558..15 2720 100 Minus
3R 32079331 3R 28740706..28740985 835..556 1400 100 Minus
X 23542271 X 3655852..3655904 393..445 190 90.6 Plus
Blast to na_te.dros performed on 2015-02-05 02:28:44 has no hits.

BS15919.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:18 Download gff for BS15919.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10001-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:36 Download gff for BS15919.5prime
Subject Subject Range Query Range Percent Splice Strand
AR-2-RA 751..1614 10..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:19 Download gff for BS15919.5prime
Subject Subject Range Query Range Percent Splice Strand
AstA-R2-RA 751..1614 10..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:19 Download gff for BS15919.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28740593..28740630 836..873 94 <- Minus
3R 28740706..28740984 557..835 100 <- Minus
3R 28743486..28744032 10..556 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:36 Download gff for BS15919.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24566315..24566352 836..873 94 <- Minus
arm_3R 24566428..24566706 557..835 100 <- Minus
arm_3R 24569208..24569754 10..556 99   Minus

BS15919.complete Sequence

1106 bp assembled on 2007-05-07

GenBank Submission: FJ637986

> BS15919.complete
GAAGTTATCAGTCGACATGGAGAACACCACAATGCTGGCTAATATTAGCC
TAAATGCAACCAGAAATGAGGAGAATATCACCTCATTCTTCACCGACGAA
GAGTGGCTGGCCATCAATGGCACTTTGCCGTGGATAGTGGGATTCTTCTT
CGGCGTCATCGCCATCACGGGATTCTTCGGCAACCTGCTGGTCATCCTGG
TGGTGGTCTTCAACAACAACATGCGCTCCACCACCAACCTGATGATTGTC
AATCTGGCTGCCGCTGATCTGATGTTCGTAATCCTCTGCATTCCCTTCAC
GGCCACCGATTACATGGTGTACTACTGGCCATATGGAAGGTTCTGGTGCC
GCAGTGTCCAGTACCTGATTGTGGTGACCGCCTTCGCCTCCATTTACACG
CTGGTGCTGATGTCCATCGATCGGTTCCTGGCGGTGGTTCATCCCATTCG
CTCGCGGATGATGAGGACGGAGAACATTACCCTGATTGCCATCGTGACTC
TGTGGATCGTGGTGCTGGTCGTTTCGGTGCCAGTGGCCTTCACCCACGAC
GTGGTGGTGGATTACGATGCAAAGAAGAACATCACCTACGGCATGTGCAC
CTTCACGACGAACGACTTCCTTGGTCCGCGCACCTACCAGGTCACCTTCT
TCATCAGCTCCTACCTGCTGCCCCTGATGATCATCAGCGGTCTCTACATG
CGCATGATCATGCGGCTCTGGCGCCAGGGAACCGGCGTCCGCATGTCCAA
GGAGTCGCAGCGCGGTCGCAAGCGGGTCACCCGACTCGTCGTCGTGGTGG
TCATCGCCTTCGCCTCGCTCTGGCTGCCTGTCCAGCTCATCCTGCTGCTC
AAGTCACTGGATGTCATCGAGACGAACACCCTCACCAAGCTAGTCATCCA
GGTCACCGCCCAGACTCTGGCCTACAGCAGCTCGTGTATCAATCCGCTGC
TCTACGCCTTCCTCTCCGAGAATTTCCGGAAGGCCTTCTACAAGGCCGTT
AACTGCTCCTCTCGATACCAGAACTACACATCTGATTTGCCGCCGCCGCG
CAAGACGTCCTGTGCCAGGACCTCCACCACTGGACTCTAAAAGCTTTCTA
GACCAT

BS15919.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-R2-RC 1074 CG10001-PC 1..1074 17..1090 5370 100 Plus
AstA-R2-RA 1074 CG10001-PA 1..1074 17..1090 5370 100 Plus
AstA-R2-RB 1053 CG10001-PB 1..979 17..995 4895 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-R2-RC 1994 CG10001-RC 756..1831 15..1090 5380 100 Plus
AstA-R2-RA 2273 CG10001-RA 756..1831 15..1090 5380 100 Plus
AstA-R2-RB 2077 CG10001-RB 756..1736 15..995 4905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28743484..28744027 558..15 2720 100 Minus
3R 32079331 3R 28740706..28740985 835..556 1400 100 Minus
3R 32079331 3R 28740471..28740633 995..833 815 100 Minus
3R 32079331 3R 28737551..28737648 1090..993 490 100 Minus
X 23542271 X 3655852..3655904 393..445 190 90.6 Plus
Blast to na_te.dros performed on 2014-11-27 19:43:24 has no hits.

BS15919.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:47 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
AR-2-RA 1..1074 17..1090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:50 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
AR-2-RA 102..1182 10..1090 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:28 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
AR-2-RA 758..1829 17..1088 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:47 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
AR-2-RA 102..1182 10..1090 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:06 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
AstA-R2-RA 758..1829 17..1088 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:06 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28737553..28737646 995..1088 100 <- Minus
3R 28740472..28740630 836..994 100 <- Minus
3R 28740706..28740984 557..835 100 <- Minus
3R 28743486..28744025 17..556 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:28 Download gff for BS15919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24563275..24563368 995..1088 100 <- Minus
arm_3R 24566194..24566352 836..994 100 <- Minus
arm_3R 24566428..24566706 557..835 100 <- Minus
arm_3R 24569208..24569747 17..556 100   Minus

BS15919.pep Sequence

Translation from 16 to 1089

> BS15919.pep
MENTTMLANISLNATRNEENITSFFTDEEWLAINGTLPWIVGFFFGVIAI
TGFFGNLLVILVVVFNNNMRSTTNLMIVNLAAADLMFVILCIPFTATDYM
VYYWPYGRFWCRSVQYLIVVTAFASIYTLVLMSIDRFLAVVHPIRSRMMR
TENITLIAIVTLWIVVLVVSVPVAFTHDVVVDYDAKKNITYGMCTFTTND
FLGPRTYQVTFFISSYLLPLMIISGLYMRMIMRLWRQGTGVRMSKESQRG
RKRVTRLVVVVVIAFASLWLPVQLILLLKSLDVIETNTLTKLVIQVTAQT
LAYSSSCINPLLYAFLSENFRKAFYKAVNCSSRYQNYTSDLPPPRKTSCA
RTSTTGL*

BS15919.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
AstA-R2-PC 357 CG10001-PC 1..357 1..357 1826 100 Plus
AstA-R2-PA 357 CG10001-PA 1..357 1..357 1826 100 Plus
AstA-R2-PB 350 CG10001-PB 1..338 1..339 1661 97.1 Plus
AstA-R1-PD 394 CG2872-PD 63..380 27..355 816 49.5 Plus
AstA-R1-PB 394 CG2872-PB 63..380 27..355 816 49.5 Plus