Clone Sequence Records
BS15920.complete Sequence
2300 bp assembled on 2009-12-07
GenBank Submission: KX805293
> BS15920.complete
GAAGTTATCAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTT
CGGACCTGCGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAG
CTGGACCACCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACC
GAGGGACAGTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGC
CGCAGCAAACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGAT
CAGAATGAGCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCG
TCAAAGCACTCGGGTCAGCAACTCCCAGTTGCTGGCTATCGCCGAGGACG
AGCACAACTCCACGGCCTCGCTGATGCCGCCTCCGCCTGTGCCCGTCTCG
GCGGACACCACCCTCGGCTCCGGAAGGCCACAGCGAGCCGCTAAGCTGAA
GACCGAGAAATTACTCAAGGAGCCCTCACTCAACCGTAAGATGCGGCGGC
CCAGCAGCGAGGAGCTCGTAAAGGTCAAGGTTGAGAGCGAGCAGCGAGTC
TCCCAGTTTAACAGCTTCACCAGTGCACAGGCGTTAGAGGAAAATAAACT
AGCGGAGCCGGAACTAGAAGAGCCAGCAGCAGAAACAGCTGAGCAGCAAA
AGCCTCCGGAGGAGGCCTCAGTCACAGAGGACGTGAACACCACGAAGACA
CTCCGCGTGAAGGTAAAGCGCGAGAAACTCAGTACCGAAGCAGTGCCCCC
GTTAACCAATGCGGTCTCCACGGCAAATGTGACCACCGTCTCCTCTGTAA
CAACGGAGGCAGCGCGACCGGACGATACGGTGGCCAGCAACACGACGACA
TCCACGGAGGTCTCCAAGAAGGTCCGCAAGAAGAAGAAGGACGTGGAAAG
CCACCGACCCATAAAGGTGGAACGATTCAGCGACCTGGACAAGAGCTCGC
CAGTCTCGTCGCGCACGCGCAAGTGTAGCAGCGATTCGCGAACGGTTCAG
GAGCGATCCATATACAAGGATGCACTCGAAGATCCGCCCGTTGCAGAGCA
ATCAGTGGCTGCAGTTGCTCCGGCTGCTGTCAATGAGACCGTGGCGATTT
CCAACGCCACCCTCGTACTGGGTCCTGCGCCGACGAGCGATAGTCCAATA
GGACCAGCTGGAGATGCCACTTTTGAGGTGCACTCCAACGACAAGAAACA
ACCTCTGAGTAAGCAGGACAGCCTCTTAACGGAGGACGAGTCGGTGGAGG
AGAAGCTGCCGACGACCAAGCTGCTCTCGAGCATAAAGGCTATAAAACTG
CCTACCCGTACACATGAGCTTTTCAACCCACTGCTTCAGAGTCCAGTGAA
AATGCGCGTGGAGGCGTTCGAGAATGCGGCAAACGCACAGAACAGCATGC
GCCCTAAGCGGGGAAAAGATCTGCAGGGCACGCCAGGATCAAACAACACT
CCCAAAATTGGCAAGCTGCCTGCTCCGACTGTTGGTCGCTTTTTCACACC
GACTCAAACGACAAGCACACTACCATTAAGCTCGGCGCAGCCCAAGAAGG
GACCTGCCAGCGCGTCTAAGGCCACTAGTCTGCTGAAGACGGCCACCGGT
ACGAACCTAAGGTCGGTCAATTCCACGTCCACAAAAACGCTGTCGCGCGA
GAACAGCGGAGACGACTTCCGCAAGGGCCTGCACAATCTGGCGGAGGAGC
GCAAGAAGCTGCGTGAGCAAAAGCACCAGCAGGCTGCCCAGCAGCGCGAA
GCCAAGGAGCGGGAGCGGGCAGAGCGTATGGCCAAGCTGGCCGCCGAGCG
CGCCAAGAAGCAGGAGGAGCGAAAGCGAATTGAAGAGCGCAAACGACAAG
AGCTGGAGGAGCTGCAGCGGAAGATGCGCCAGCAAGAGGAAGCCGAGGCG
CTCAAGAAGGCCAAGTTCAAGGAGCTGGAGCAGCAGAAACTGCAGCAGCT
AACCGGCGCCAAGCCCAAGAAGATGCTTCCGCCGCCGCCGAAAACCAAGT
ACACCTGGGAGATGCTGCACGAAGACGACTCGACAGACGACGAGGGAAAG
GTCACCCACAAGCGTCCCCCAGCGCCCACCTGGAGTCGAAGCCACGTAAG
GGGAGAGGCAATTGCTATGCAGAGCCACTGCCCAACCGACATCATCGACA
GCTTTTTCTCGGTGGCGCCCACCACACCGGACCTAAAGCAGATATTCCCG
AACATCGATCCCAGCCAGCTGAAGCGAAACTCCAGCGTGCTGTGGTCCAC
GCCGCCGCGCTATTCCGAGCTGCCGAAATACTAGAAGCTTTCTAGACCAT
BS15920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Incenp-RB | 2268 | CG12165-PB | 1..2268 | 17..2284 | 11340 | 100 | Plus |
Incenp-RA | 2268 | CG12165-PA | 1..2268 | 17..2284 | 11340 | 100 | Plus |
Incenp-RC | 2265 | CG12165-PC | 1..2265 | 17..2284 | 11260 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Incenp-RB | 2459 | CG12165-RB | 124..2391 | 17..2284 | 11340 | 100 | Plus |
Incenp-RA | 2699 | CG12165-RA | 124..2391 | 17..2284 | 11340 | 100 | Plus |
Incenp-RC | 2595 | CG12165-RC | 263..2527 | 17..2284 | 11260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7279106..7280166 | 266..1326 | 5305 | 100 | Plus |
2R | 25286936 | 2R | 7280470..7281138 | 1423..2091 | 3345 | 100 | Plus |
2R | 25286936 | 2R | 7281294..7281487 | 2091..2284 | 970 | 100 | Plus |
2R | 25286936 | 2R | 7278859..7279041 | 84..266 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7280230..7280326 | 1327..1423 | 485 | 100 | Plus |
2R | 25286936 | 2R | 7278729..7278798 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:39:15 has no hits.
BS15920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:39 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 1..2268 | 17..2284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:14 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 263..2530 | 17..2284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:51 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 263..2530 | 17..2284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:44 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 263..2530 | 17..2284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:44 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 124..2391 | 17..2284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:44 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7281294..7281487 | 2091..2284 | 100 | | Plus |
2R | 7278729..7278797 | 17..85 | 100 | -> | Plus |
2R | 7278861..7279041 | 86..266 | 100 | -> | Plus |
2R | 7279107..7280166 | 267..1326 | 100 | -> | Plus |
2R | 7280230..7280326 | 1327..1423 | 100 | -> | Plus |
2R | 7280471..7281137 | 1424..2090 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:51 Download gff for
BS15920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3166366..3166546 | 86..266 | 100 | -> | Plus |
arm_2R | 3166234..3166302 | 17..85 | 100 | -> | Plus |
arm_2R | 3166612..3167671 | 267..1326 | 100 | -> | Plus |
arm_2R | 3167735..3167831 | 1327..1423 | 100 | -> | Plus |
arm_2R | 3167976..3168642 | 1424..2090 | 100 | -> | Plus |
arm_2R | 3168799..3168992 | 2091..2284 | 100 | | Plus |
BS15920.3prime Sequence
920 bp (852 high quality bases) assembled on 2007-04-16
> BS15920.3prime
ATGGTCTAGAAAGCTTCTAGTATTTCGGCAGCTCGGAATAGCGCGGCGGC
GTGGACCACAGCACGCTGGAGTTTCGCTTCAGCTGGCTGGGATCGATGTT
CGGGAATATCTGCTTTAGGTCCGGTGTGGTGGGCGCCACCGAGAAAAAGC
TGTCGATGATGTCGGTTGGGCAGTGGCTCTGCATAGCAATTGCCTCTCCC
CTTACGTGGCTTCGACTCCAGGTGGGCGCTGGGGGACGCTTGTGGGTGAC
CTTTCCCTCGTCGTCTGTCGAGTCGTCTTCGTGCAGCATCTCCCAGGTGT
ACTTGGTTTTCGGCGGCGGCGGAAGCATCTTCTTGGGCTTGGCGCCGGTT
AGCTGCTGCAGTTTCTGCTGCTCCAGCTCCTTGAACTTGGCCTTCTTGAG
CGCCTCGGCTTCCTCTTGCTGGCGCATCTTCCGCTGCAGCTCCTCCAGCT
CTTGTCGTTTGCGCTCTTCAATTCGCTTTCGCTCCTCCTGCTTCTTGGCG
CGCTCGGCGGCCAGCTTGGCCATACGCTCTGCCCGCTCCCGCTCCTTGGC
TTCGCGCTGCTGGGCAGCCTGCTGGTGCTTTTGCTCACGCAGCTTCTTGC
GCTCCTCCGCCAGATTGTGCAGGCCCTTGCGGAAGTCGTCTCCGCTGTTC
TCGCGCGACAGCGTTTTTGTGGACGTGGAATTGACCGACCTTAGGTTCGT
ACCGGTGGCCGTCTTCAGCAGACTAGTGGCCTTAGACGCGCTGGCAGGTC
CCTTCTTGGGCTGCGCCGAGCTTAATGGTAGTGTGCTTGTCGTTTGAGTC
GGTGTGAAAAAGCGACCAACAGTCGGAGCAGGCAGCTTGCCAATTTTGGG
AGTGTTGTTTGATCCTGGCGTGCCCTGCAGATCTTTTCCCCGCTTAGGGC
GCATGCTGTTCTGTGCGTTT
BS15920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12165-PA | 2268 | Incenp-RA | 1365..2268 | 920..17 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Incenp-RB | 2459 | CG12165-RB | 1488..2391 | 920..17 | 4520 | 100 | Minus |
Incenp-RA | 2699 | CG12165-RA | 1488..2391 | 920..17 | 4520 | 100 | Minus |
Incenp-RC | 2595 | CG12165-RC | 1627..2527 | 920..17 | 4465 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7280470..7281138 | 878..210 | 3345 | 100 | Minus |
2R | 25286936 | 2R | 7281294..7281487 | 210..17 | 970 | 100 | Minus |
2R | 25286936 | 2R | 7280284..7280326 | 920..878 | 215 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 15:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3976..4034 | 640..583 | 121 | 69.5 | Minus |
BS15920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:18 Download gff for
BS15920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12165-PA | 1365..2268 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:42:49 Download gff for
BS15920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 1627..2530 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:34 Download gff for
BS15920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 1488..2391 | 17..920 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:34 Download gff for
BS15920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7280284..7280326 | 878..920 | 100 | -> | Minus |
2R | 7280471..7281137 | 211..877 | 100 | -> | Minus |
2R | 7281294..7281491 | 14..210 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:42:49 Download gff for
BS15920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3167789..3167831 | 878..920 | 100 | -> | Minus |
arm_2R | 3168799..3168996 | 14..210 | 98 | -> | Minus |
arm_2R | 3167976..3168642 | 211..877 | 100 | -> | Minus |
BS15920.5prime Sequence
863 bp (803 high quality bases) assembled on 2007-04-16
> BS15920.5prime
GAAGTTATCAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTT
CGGACCTGCGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAG
CTGGACCACCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACC
GAGGGACAGTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGC
CGCAGCAAACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGAT
CAGAATGAGCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCG
TCAAAGCACTCGGGTCAGCAACTCCCAGTTGCTGGCTATCGCCGAGGACG
AGCACAACTCCACGGCCTCGCTGATGCCGCCTCCGCCTGTGCCCGTCTCG
GCGGACACCACCCTCGGCTCCGGAAGGCCACAGCGAGCCGCTAAGCTGAA
GACCGAGAAATTACTCAAGGAGCCCTCACTCAACCGTAAGATGCGGCGGC
CCAGCAGCGAGGAGCTCGTAAAGGTCAAGGTTGAGAGCGAGCAGCGAGTC
TCCCAGTTTAACAGCTTCACCAGTGCACAGGCGTTAGAGGAAAATAAACT
AGCGGAGCCGGAACTAGAAGAGCCAGCAGCAGAAACAGCTGAGCAGCAAA
AGCCTCCGGAGGAGGCCTCAGTCACAGAGGACGTGAACACCACGAAGACA
CTCCGCGTGAAGGTAAAGCGCGAGAAACTCAGTACCGAAGCAGTGCCCCC
GTTAACCAATGCGGTCTCCACGGCAAATGTGACCACCGTCTCCTCTGTAA
CAACGGAGGCAGCGCGACCGGACGATACGGTGGCCCAGCACACGACGACA
TCCACGGAGGTCT
BS15920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12165-PA | 2268 | Incenp-RA | 1..847 | 17..863 | 4160 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Incenp-RB | 2459 | CG12165-RB | 124..970 | 17..863 | 4190 | 99.8 | Plus |
Incenp-RC | 2595 | CG12165-RC | 263..1109 | 17..863 | 4190 | 99.8 | Plus |
Incenp-RA | 2699 | CG12165-RA | 124..970 | 17..863 | 4190 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7279106..7279703 | 266..863 | 2930 | 99.3 | Plus |
2R | 25286936 | 2R | 7278859..7279041 | 84..266 | 915 | 100 | Plus |
2R | 25286936 | 2R | 7278729..7278798 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:37:32 has no hits.
BS15920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:19 Download gff for
BS15920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12165-PA | 1..847 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:05 Download gff for
BS15920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 254..1109 | 8..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:49:53 Download gff for
BS15920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Incenp-RA | 115..970 | 8..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:49:53 Download gff for
BS15920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7278861..7279041 | 86..266 | 100 | -> | Plus |
2R | 7278720..7278797 | 8..85 | 94 | -> | Plus |
2R | 7279107..7279703 | 267..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:05 Download gff for
BS15920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3166225..3166302 | 8..85 | 94 | -> | Plus |
arm_2R | 3166366..3166546 | 86..266 | 100 | -> | Plus |
arm_2R | 3166612..3167208 | 267..863 | 99 | | Plus |
BS15920.pep Sequence
Translation from 16 to 2283
> BS15920.pep
MEDILGVLGSLSDLRRELEVLRKAHFEELDHLFYGTGQPEAEAKPRDSAP
AAKSQENSSVTPQQTKKRPKRLTSLAEDQNEPEAPDATANNTSARQSTRV
SNSQLLAIAEDEHNSTASLMPPPPVPVSADTTLGSGRPQRAAKLKTEKLL
KEPSLNRKMRRPSSEELVKVKVESEQRVSQFNSFTSAQALEENKLAEPEL
EEPAAETAEQQKPPEEASVTEDVNTTKTLRVKVKREKLSTEAVPPLTNAV
STANVTTVSSVTTEAARPDDTVASNTTTSTEVSKKVRKKKKDVESHRPIK
VERFSDLDKSSPVSSRTRKCSSDSRTVQERSIYKDALEDPPVAEQSVAAV
APAAVNETVAISNATLVLGPAPTSDSPIGPAGDATFEVHSNDKKQPLSKQ
DSLLTEDESVEEKLPTTKLLSSIKAIKLPTRTHELFNPLLQSPVKMRVEA
FENAANAQNSMRPKRGKDLQGTPGSNNTPKIGKLPAPTVGRFFTPTQTTS
TLPLSSAQPKKGPASASKATSLLKTATGTNLRSVNSTSTKTLSRENSGDD
FRKGLHNLAEERKKLREQKHQQAAQQREAKERERAERMAKLAAERAKKQE
ERKRIEERKRQELEELQRKMRQQEEAEALKKAKFKELEQQKLQQLTGAKP
KKMLPPPPKTKYTWEMLHEDDSTDDEGKVTHKRPPAPTWSRSHVRGEAIA
MQSHCPTDIIDSFFSVAPTTPDLKQIFPNIDPSQLKRNSSVLWSTPPRYS
ELPKY*
BS15920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Incenp-PB | 755 | CG12165-PB | 1..755 | 1..755 | 3801 | 100 | Plus |
Incenp-PA | 755 | CG12165-PA | 1..755 | 1..755 | 3801 | 100 | Plus |
Incenp-PC | 754 | CG12165-PC | 1..754 | 1..755 | 3784 | 99.9 | Plus |
Muc68D-PB | 1514 | CG6004-PB | 325..917 | 42..690 | 206 | 19.3 | Plus |
Muc30E-PC | 1702 | CG33300-PC | 380..1031 | 50..692 | 196 | 17.2 | Plus |