Clone BS15920 Report

Search the DGRC for BS15920

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptIncenp-RA
Protein status:BS15920.pep: full length peptide match
Sequenced Size:2300

Clone Sequence Records

BS15920.complete Sequence

2300 bp assembled on 2009-12-07

GenBank Submission: KX805293

> BS15920.complete
GAAGTTATCAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTT
CGGACCTGCGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAG
CTGGACCACCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACC
GAGGGACAGTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGC
CGCAGCAAACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGAT
CAGAATGAGCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCG
TCAAAGCACTCGGGTCAGCAACTCCCAGTTGCTGGCTATCGCCGAGGACG
AGCACAACTCCACGGCCTCGCTGATGCCGCCTCCGCCTGTGCCCGTCTCG
GCGGACACCACCCTCGGCTCCGGAAGGCCACAGCGAGCCGCTAAGCTGAA
GACCGAGAAATTACTCAAGGAGCCCTCACTCAACCGTAAGATGCGGCGGC
CCAGCAGCGAGGAGCTCGTAAAGGTCAAGGTTGAGAGCGAGCAGCGAGTC
TCCCAGTTTAACAGCTTCACCAGTGCACAGGCGTTAGAGGAAAATAAACT
AGCGGAGCCGGAACTAGAAGAGCCAGCAGCAGAAACAGCTGAGCAGCAAA
AGCCTCCGGAGGAGGCCTCAGTCACAGAGGACGTGAACACCACGAAGACA
CTCCGCGTGAAGGTAAAGCGCGAGAAACTCAGTACCGAAGCAGTGCCCCC
GTTAACCAATGCGGTCTCCACGGCAAATGTGACCACCGTCTCCTCTGTAA
CAACGGAGGCAGCGCGACCGGACGATACGGTGGCCAGCAACACGACGACA
TCCACGGAGGTCTCCAAGAAGGTCCGCAAGAAGAAGAAGGACGTGGAAAG
CCACCGACCCATAAAGGTGGAACGATTCAGCGACCTGGACAAGAGCTCGC
CAGTCTCGTCGCGCACGCGCAAGTGTAGCAGCGATTCGCGAACGGTTCAG
GAGCGATCCATATACAAGGATGCACTCGAAGATCCGCCCGTTGCAGAGCA
ATCAGTGGCTGCAGTTGCTCCGGCTGCTGTCAATGAGACCGTGGCGATTT
CCAACGCCACCCTCGTACTGGGTCCTGCGCCGACGAGCGATAGTCCAATA
GGACCAGCTGGAGATGCCACTTTTGAGGTGCACTCCAACGACAAGAAACA
ACCTCTGAGTAAGCAGGACAGCCTCTTAACGGAGGACGAGTCGGTGGAGG
AGAAGCTGCCGACGACCAAGCTGCTCTCGAGCATAAAGGCTATAAAACTG
CCTACCCGTACACATGAGCTTTTCAACCCACTGCTTCAGAGTCCAGTGAA
AATGCGCGTGGAGGCGTTCGAGAATGCGGCAAACGCACAGAACAGCATGC
GCCCTAAGCGGGGAAAAGATCTGCAGGGCACGCCAGGATCAAACAACACT
CCCAAAATTGGCAAGCTGCCTGCTCCGACTGTTGGTCGCTTTTTCACACC
GACTCAAACGACAAGCACACTACCATTAAGCTCGGCGCAGCCCAAGAAGG
GACCTGCCAGCGCGTCTAAGGCCACTAGTCTGCTGAAGACGGCCACCGGT
ACGAACCTAAGGTCGGTCAATTCCACGTCCACAAAAACGCTGTCGCGCGA
GAACAGCGGAGACGACTTCCGCAAGGGCCTGCACAATCTGGCGGAGGAGC
GCAAGAAGCTGCGTGAGCAAAAGCACCAGCAGGCTGCCCAGCAGCGCGAA
GCCAAGGAGCGGGAGCGGGCAGAGCGTATGGCCAAGCTGGCCGCCGAGCG
CGCCAAGAAGCAGGAGGAGCGAAAGCGAATTGAAGAGCGCAAACGACAAG
AGCTGGAGGAGCTGCAGCGGAAGATGCGCCAGCAAGAGGAAGCCGAGGCG
CTCAAGAAGGCCAAGTTCAAGGAGCTGGAGCAGCAGAAACTGCAGCAGCT
AACCGGCGCCAAGCCCAAGAAGATGCTTCCGCCGCCGCCGAAAACCAAGT
ACACCTGGGAGATGCTGCACGAAGACGACTCGACAGACGACGAGGGAAAG
GTCACCCACAAGCGTCCCCCAGCGCCCACCTGGAGTCGAAGCCACGTAAG
GGGAGAGGCAATTGCTATGCAGAGCCACTGCCCAACCGACATCATCGACA
GCTTTTTCTCGGTGGCGCCCACCACACCGGACCTAAAGCAGATATTCCCG
AACATCGATCCCAGCCAGCTGAAGCGAAACTCCAGCGTGCTGTGGTCCAC
GCCGCCGCGCTATTCCGAGCTGCCGAAATACTAGAAGCTTTCTAGACCAT

BS15920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-RB 2268 CG12165-PB 1..2268 17..2284 11340 100 Plus
Incenp-RA 2268 CG12165-PA 1..2268 17..2284 11340 100 Plus
Incenp-RC 2265 CG12165-PC 1..2265 17..2284 11260 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-RB 2459 CG12165-RB 124..2391 17..2284 11340 100 Plus
Incenp-RA 2699 CG12165-RA 124..2391 17..2284 11340 100 Plus
Incenp-RC 2595 CG12165-RC 263..2527 17..2284 11260 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7279106..7280166 266..1326 5305 100 Plus
2R 25286936 2R 7280470..7281138 1423..2091 3345 100 Plus
2R 25286936 2R 7281294..7281487 2091..2284 970 100 Plus
2R 25286936 2R 7278859..7279041 84..266 915 100 Plus
2R 25286936 2R 7280230..7280326 1327..1423 485 100 Plus
2R 25286936 2R 7278729..7278798 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:39:15 has no hits.

BS15920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:39 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1..2268 17..2284 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:14 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 263..2530 17..2284 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:51 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 263..2530 17..2284 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:44 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 263..2530 17..2284 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:44 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 124..2391 17..2284 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:44 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7281294..7281487 2091..2284 100   Plus
2R 7278729..7278797 17..85 100 -> Plus
2R 7278861..7279041 86..266 100 -> Plus
2R 7279107..7280166 267..1326 100 -> Plus
2R 7280230..7280326 1327..1423 100 -> Plus
2R 7280471..7281137 1424..2090 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:51 Download gff for BS15920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3166366..3166546 86..266 100 -> Plus
arm_2R 3166234..3166302 17..85 100 -> Plus
arm_2R 3166612..3167671 267..1326 100 -> Plus
arm_2R 3167735..3167831 1327..1423 100 -> Plus
arm_2R 3167976..3168642 1424..2090 100 -> Plus
arm_2R 3168799..3168992 2091..2284 100   Plus

BS15920.3prime Sequence

920 bp (852 high quality bases) assembled on 2007-04-16

> BS15920.3prime
ATGGTCTAGAAAGCTTCTAGTATTTCGGCAGCTCGGAATAGCGCGGCGGC
GTGGACCACAGCACGCTGGAGTTTCGCTTCAGCTGGCTGGGATCGATGTT
CGGGAATATCTGCTTTAGGTCCGGTGTGGTGGGCGCCACCGAGAAAAAGC
TGTCGATGATGTCGGTTGGGCAGTGGCTCTGCATAGCAATTGCCTCTCCC
CTTACGTGGCTTCGACTCCAGGTGGGCGCTGGGGGACGCTTGTGGGTGAC
CTTTCCCTCGTCGTCTGTCGAGTCGTCTTCGTGCAGCATCTCCCAGGTGT
ACTTGGTTTTCGGCGGCGGCGGAAGCATCTTCTTGGGCTTGGCGCCGGTT
AGCTGCTGCAGTTTCTGCTGCTCCAGCTCCTTGAACTTGGCCTTCTTGAG
CGCCTCGGCTTCCTCTTGCTGGCGCATCTTCCGCTGCAGCTCCTCCAGCT
CTTGTCGTTTGCGCTCTTCAATTCGCTTTCGCTCCTCCTGCTTCTTGGCG
CGCTCGGCGGCCAGCTTGGCCATACGCTCTGCCCGCTCCCGCTCCTTGGC
TTCGCGCTGCTGGGCAGCCTGCTGGTGCTTTTGCTCACGCAGCTTCTTGC
GCTCCTCCGCCAGATTGTGCAGGCCCTTGCGGAAGTCGTCTCCGCTGTTC
TCGCGCGACAGCGTTTTTGTGGACGTGGAATTGACCGACCTTAGGTTCGT
ACCGGTGGCCGTCTTCAGCAGACTAGTGGCCTTAGACGCGCTGGCAGGTC
CCTTCTTGGGCTGCGCCGAGCTTAATGGTAGTGTGCTTGTCGTTTGAGTC
GGTGTGAAAAAGCGACCAACAGTCGGAGCAGGCAGCTTGCCAATTTTGGG
AGTGTTGTTTGATCCTGGCGTGCCCTGCAGATCTTTTCCCCGCTTAGGGC
GCATGCTGTTCTGTGCGTTT

BS15920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12165-PA 2268 Incenp-RA 1365..2268 920..17 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-RB 2459 CG12165-RB 1488..2391 920..17 4520 100 Minus
Incenp-RA 2699 CG12165-RA 1488..2391 920..17 4520 100 Minus
Incenp-RC 2595 CG12165-RC 1627..2527 920..17 4465 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7280470..7281138 878..210 3345 100 Minus
2R 25286936 2R 7281294..7281487 210..17 970 100 Minus
2R 25286936 2R 7280284..7280326 920..878 215 100 Minus
Blast to na_te.dros performed 2015-02-10 15:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3976..4034 640..583 121 69.5 Minus

BS15920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:18 Download gff for BS15920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12165-PA 1365..2268 17..920 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:42:49 Download gff for BS15920.3prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1627..2530 17..920 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:34 Download gff for BS15920.3prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1488..2391 17..920 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:34 Download gff for BS15920.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7280284..7280326 878..920 100 -> Minus
2R 7280471..7281137 211..877 100 -> Minus
2R 7281294..7281491 14..210 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:42:49 Download gff for BS15920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3167789..3167831 878..920 100 -> Minus
arm_2R 3168799..3168996 14..210 98 -> Minus
arm_2R 3167976..3168642 211..877 100 -> Minus

BS15920.5prime Sequence

863 bp (803 high quality bases) assembled on 2007-04-16

> BS15920.5prime
GAAGTTATCAGTCGACATGGAGGACATCTTGGGCGTGCTGGGCTCGCTTT
CGGACCTGCGCAGGGAGCTCGAGGTCCTGCGCAAGGCCCACTTTGAGGAG
CTGGACCACCTCTTCTACGGCACAGGCCAGCCGGAGGCGGAGGCCAAACC
GAGGGACAGTGCTCCGGCAGCGAAGAGTCAGGAGAACTCTTCGGTGACGC
CGCAGCAAACGAAAAAGCGCCCCAAGCGACTCACCTCACTGGCCGAGGAT
CAGAATGAGCCCGAGGCTCCAGACGCCACGGCCAACAACACGTCGGCCCG
TCAAAGCACTCGGGTCAGCAACTCCCAGTTGCTGGCTATCGCCGAGGACG
AGCACAACTCCACGGCCTCGCTGATGCCGCCTCCGCCTGTGCCCGTCTCG
GCGGACACCACCCTCGGCTCCGGAAGGCCACAGCGAGCCGCTAAGCTGAA
GACCGAGAAATTACTCAAGGAGCCCTCACTCAACCGTAAGATGCGGCGGC
CCAGCAGCGAGGAGCTCGTAAAGGTCAAGGTTGAGAGCGAGCAGCGAGTC
TCCCAGTTTAACAGCTTCACCAGTGCACAGGCGTTAGAGGAAAATAAACT
AGCGGAGCCGGAACTAGAAGAGCCAGCAGCAGAAACAGCTGAGCAGCAAA
AGCCTCCGGAGGAGGCCTCAGTCACAGAGGACGTGAACACCACGAAGACA
CTCCGCGTGAAGGTAAAGCGCGAGAAACTCAGTACCGAAGCAGTGCCCCC
GTTAACCAATGCGGTCTCCACGGCAAATGTGACCACCGTCTCCTCTGTAA
CAACGGAGGCAGCGCGACCGGACGATACGGTGGCCCAGCACACGACGACA
TCCACGGAGGTCT

BS15920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12165-PA 2268 Incenp-RA 1..847 17..863 4160 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-RB 2459 CG12165-RB 124..970 17..863 4190 99.8 Plus
Incenp-RC 2595 CG12165-RC 263..1109 17..863 4190 99.8 Plus
Incenp-RA 2699 CG12165-RA 124..970 17..863 4190 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7279106..7279703 266..863 2930 99.3 Plus
2R 25286936 2R 7278859..7279041 84..266 915 100 Plus
2R 25286936 2R 7278729..7278798 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:37:32 has no hits.

BS15920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:19 Download gff for BS15920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12165-PA 1..847 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:11:05 Download gff for BS15920.5prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 254..1109 8..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:49:53 Download gff for BS15920.5prime
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 115..970 8..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:49:53 Download gff for BS15920.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7278861..7279041 86..266 100 -> Plus
2R 7278720..7278797 8..85 94 -> Plus
2R 7279107..7279703 267..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:11:05 Download gff for BS15920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3166225..3166302 8..85 94 -> Plus
arm_2R 3166366..3166546 86..266 100 -> Plus
arm_2R 3166612..3167208 267..863 99   Plus

BS15920.pep Sequence

Translation from 16 to 2283

> BS15920.pep
MEDILGVLGSLSDLRRELEVLRKAHFEELDHLFYGTGQPEAEAKPRDSAP
AAKSQENSSVTPQQTKKRPKRLTSLAEDQNEPEAPDATANNTSARQSTRV
SNSQLLAIAEDEHNSTASLMPPPPVPVSADTTLGSGRPQRAAKLKTEKLL
KEPSLNRKMRRPSSEELVKVKVESEQRVSQFNSFTSAQALEENKLAEPEL
EEPAAETAEQQKPPEEASVTEDVNTTKTLRVKVKREKLSTEAVPPLTNAV
STANVTTVSSVTTEAARPDDTVASNTTTSTEVSKKVRKKKKDVESHRPIK
VERFSDLDKSSPVSSRTRKCSSDSRTVQERSIYKDALEDPPVAEQSVAAV
APAAVNETVAISNATLVLGPAPTSDSPIGPAGDATFEVHSNDKKQPLSKQ
DSLLTEDESVEEKLPTTKLLSSIKAIKLPTRTHELFNPLLQSPVKMRVEA
FENAANAQNSMRPKRGKDLQGTPGSNNTPKIGKLPAPTVGRFFTPTQTTS
TLPLSSAQPKKGPASASKATSLLKTATGTNLRSVNSTSTKTLSRENSGDD
FRKGLHNLAEERKKLREQKHQQAAQQREAKERERAERMAKLAAERAKKQE
ERKRIEERKRQELEELQRKMRQQEEAEALKKAKFKELEQQKLQQLTGAKP
KKMLPPPPKTKYTWEMLHEDDSTDDEGKVTHKRPPAPTWSRSHVRGEAIA
MQSHCPTDIIDSFFSVAPTTPDLKQIFPNIDPSQLKRNSSVLWSTPPRYS
ELPKY*

BS15920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-PB 755 CG12165-PB 1..755 1..755 3801 100 Plus
Incenp-PA 755 CG12165-PA 1..755 1..755 3801 100 Plus
Incenp-PC 754 CG12165-PC 1..754 1..755 3784 99.9 Plus
Muc68D-PB 1514 CG6004-PB 325..917 42..690 206 19.3 Plus
Muc30E-PC 1702 CG33300-PC 380..1031 50..692 196 17.2 Plus