Clone Sequence Records
BS15921.complete Sequence
2678 bp assembled on 2009-12-07
GenBank Submission: KX801213
> BS15921.complete
GAAGTTATCAGTCGACATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCC
CCCAGTTTATTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGAC
GACGGCCCACAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGC
CGACCTGGAGGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACG
CCGCCTTCTTTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCC
GCCCACATTGCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCA
GCAGATCGATGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGG
GCAATGGATACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCAT
GGCATTAGCATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTT
CCGCAAGAAGTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGT
CGTCGCTGTGCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCG
GCTAGCACGGGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCT
CTTCGAGCTGGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCC
TGGGCTTTCAGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGC
ATCAGCATGGCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGG
CCCCATCGTTAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTA
TGAATCCGGAACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCT
AAGATAGACTTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGAT
GCACAAGCTGCCCAGCATTGTGGGCAGCTCCATTAAGGTAAACCGGCTCA
TCGAATTGCCAGCCGAGCCGCTAAAGCTGCCTCGCCGAAAGAATTTCAAG
GCATCGGACAATCTCAGCAGTGACGTTAACCAAAACCAAGGCGATGGTGA
TTTTGTGGAGATTCCCGTGCCCACGGCACATTTGGGACCTGGTTTACCGG
TCTCTGTTCGCTTGCTGAGCGCGAGACGACGTTCGGGAATGCTGGGCGAG
GGTCGCTATCGCGGCTGGCACAAGCCCATTCCGCCAAGTCCTTCGATTCT
GTTTCACTGCCATGGCGGTGGCTTTGTGGCCCAATCGTCCAAGTCCCACG
AACTGTATTTGCGCGACTGGGCCGTGGCACTGGACTGTCCTATTCTCTCG
GTGGATTACAGCCTAGCTCCTGAGGCGCCATTTCCACGCGCCCTGCAAGA
AGTTTACTACGCTTACTGCTGGCTTCTGAACAATACCGAACTCCTAGGCA
CAACAGCTGAGCGAGTTGTATGCGCAGGTGACTCGGCTGGGGCAAATCTG
TCAATTGGAGTAGCCCTCAAGTGCATTGAGCAGGGAGTTCGAGTGCCAGA
TGGTCTGTTTCTGGCCTACTGCCCAACTCTCGTCAGCTTTGTGCCCAGTC
CGGCCCGCCTTCTCTGTTTGATGGATCCCCTGCTGCCTTTCGGCTTCATG
ATGCGCTGCCTTCGTGCCTATGCCGCTCCCGCCCAGGAGACACTTCAGCA
GAATGCCAAGCAAGTCGAGGATGCCGCCCAGATACGCAATGTCCCCAAGT
CGAACGTGGGAAGCTTGAACTCCAGTCGCCGCACCTCGATGGCCAGAAGT
CCGCTTTCGCCGCTGGAAGCCAGCATGAACCCAGATGACGAAAGCAGCGA
CACCTTTGCCAGTGCCTCAGCCTCTTACCACAGCCAGACGGTGGAGCGTA
CCGATCTCCCCCACACCGAAGGCGACAACAGCTCGTGCGTCTCGTTCGAG
GATGATTCACAGCCCATTGTGCACTACCCAATCGAAATATCAGCCGACCC
ACCTAAGGATACCGCCTCTGCAGCCTATATTGACAATTTTCTGGACAAGT
ATCTCATTGACACGGCCACAATGGAGGTAACCGAAGAGACAGCTCCCGAA
GCGGTGCAAGCGCAGGCAAATGGACATGCGAAGATCAGTTCCGATGATGA
TATTCTAGTGGAGACTGGTCGGGATCTTGTTGCAATAGATACGCTGCAAG
GCCGCCTGCAGGAAGCCGTCAACAACATAACCAACACCTTGACGCGCTGC
ACGCAGTCCTACGAGATTCACGGAAGCAACGTGATGGCTCAACAGGATGT
GCGCAACATGGACGCACTGATAGCACGGAGTCCCAGCGAGGAGTTTGCAT
TCGATGTGCCTAAGGATCCATTCCTGTCGCCGTACTGGGCCAGTGATGAG
TGGCTTTCCCAACTGCCGGAGACCAAAATACTTACACTTAACATGGACCC
CTGTCTGGATGATTGCGTTATGTTTGCCAAGAAACTGAAGCGGCTTGGGC
GACAAGTTGACTTGGAAATACTTGAGGGGTTGCCGCACGGATTCCTAAAT
TTCACAATGTTATCCAACGAAGCCATGGAGGGCTCAAAGAAGTGCATCAA
ATCTCTACAGACGTTGCTTCAAACCGATTCGAAGACCAAGAACATTGACA
AAGCCAACTCGATGGACGAGGAGGAGTCCTCCAGTCCCAGTGCAAGTCTA
GCCGCTTCATAGAAGCTTTCTAGACCAT
BS15921.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsl-RC | 2646 | CG11055-PC | 1..2646 | 17..2662 | 13230 | 100 | Plus |
Hsl-RA | 2646 | CG11055-PA | 1..2646 | 17..2662 | 13230 | 100 | Plus |
Hsl-RB | 2646 | CG11055-PB | 1..2646 | 17..2662 | 13230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsl-RC | 3613 | CG11055-RC | 201..2846 | 17..2662 | 13230 | 100 | Plus |
Hsl-RA | 3554 | CG11055-RA | 142..2787 | 17..2662 | 13230 | 100 | Plus |
Hsl-RB | 3522 | CG11055-RB | 110..2755 | 17..2662 | 13230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20258193..20260559 | 17..2383 | 11835 | 100 | Plus |
2R | 25286936 | 2R | 20260806..20260959 | 2509..2662 | 770 | 100 | Plus |
2R | 25286936 | 2R | 20260621..20260750 | 2384..2513 | 635 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:45:35 has no hits.
BS15921.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:40 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11055-RC | 1..2646 | 17..2662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:04 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11055-RC | 201..2846 | 17..2662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:56 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsl-RB | 110..2755 | 17..2662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:05 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11055-RC | 201..2846 | 17..2662 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:10 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsl-RB | 110..2755 | 17..2662 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:10 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20258193..20260559 | 17..2383 | 100 | -> | Plus |
2R | 20260621..20260746 | 2384..2509 | 100 | -> | Plus |
2R | 20260807..20260959 | 2510..2662 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:56 Download gff for
BS15921.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16145698..16148064 | 17..2383 | 100 | -> | Plus |
arm_2R | 16148126..16148251 | 2384..2509 | 100 | -> | Plus |
arm_2R | 16148312..16148464 | 2510..2662 | 100 | | Plus |
BS15921.3prime Sequence
814 bp (813 high quality bases) assembled on 2007-04-16
> BS15921.3prime
ATGGTCTAGAAAGCTTCTATGAAGCGGCTAGACTTGCACTGGGACTGGAG
GACTCCTCCTCGTCCATCGAGTTGGCTTTGTCAATGTTCTTGGTCTTCGA
ATCGGTTTGAAGCAACGTCTGTAGAGATTTGATGCACTTCTTTGAGCCCT
CCATGGCTTCGTTGGATAACATTGTGAAATTTAGGAATCCGTGCGGCAAC
CCCTCAAGTATTTCCAAGTCAACTTGTCGCCCAAGCCGCTTCAGTTTCTT
GGCAAACATAACGCAATCATCCAGACAGGGGTCCATGTTAAGTGTAAGTA
TTTTGGTCTCCGGCAGTTGGGAAAGCCACTCATCACTGGCCCAGTACGGC
GACAGGAATGGATCCTTAGGCACATCGAATGCAAACTCCTCGCTGGGACT
CCGTGCTATCAGTGCGTCCATGTTGCGCACATCCTGTTGAGCCATCACGT
TGCTTCCGTGAATCTCGTAGGACTGCGTGCAGCGCGTCAAGGTGTTGGTT
ATGTTGTTGACGGCTTCCTGCAGGCGGCCTTGCAGCGTATCTATTGCAAC
AAGATCCCGACCAGTCTCCACTAGAATATCATCATCGGAACTGATCTTCG
CATGTCCATTTGCCTGCGCTTGCACCGCTTCGGGAGCTGTCTCTTCGGTT
ACCTCCATTGTGGCCGTGTCAATGAGATACTTGTCCAGAAAATTGTCAAT
ATAGGCTGCAGAGGCGGTATCCTTAGGTGGGTCGGCTGATATTTCGATTG
GGTAGTGCACAATGGGCTGTGAATCATCCTCGAACGAGACGCACGAGCTG
TTGTCGCCTTCGGT
BS15921.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11055-PB | 2646 | CG11055-RB | 1849..2646 | 814..17 | 3990 | 100 | Minus |
CG11055-PA | 2646 | CG11055-RA | 1849..2646 | 814..17 | 3990 | 100 | Minus |
CG11055-PC | 2646 | CG11055-RC | 1849..2646 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsl-RC | 3613 | CG11055-RC | 2049..2846 | 814..17 | 3990 | 100 | Minus |
Hsl-RA | 3554 | CG11055-RA | 1990..2787 | 814..17 | 3990 | 100 | Minus |
Hsl-RB | 3522 | CG11055-RB | 1958..2755 | 814..17 | 3990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20260041..20260559 | 814..296 | 2595 | 100 | Minus |
2R | 25286936 | 2R | 20260806..20260959 | 170..17 | 770 | 100 | Minus |
2R | 25286936 | 2R | 20260621..20260750 | 295..166 | 635 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:00:51 has no hits.
BS15921.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:19 Download gff for
BS15921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11055-PC | 1849..2646 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:39 Download gff for
BS15921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsl-RB | 1958..2765 | 9..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:09 Download gff for
BS15921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsl-RB | 1958..2765 | 9..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:09 Download gff for
BS15921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20260041..20260559 | 296..814 | 100 | -> | Minus |
2R | 20260621..20260746 | 170..295 | 100 | -> | Minus |
2R | 20260807..20260969 | 9..169 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:39 Download gff for
BS15921.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16147546..16148064 | 296..814 | 100 | -> | Minus |
arm_2R | 16148126..16148251 | 170..295 | 100 | -> | Minus |
arm_2R | 16148312..16148474 | 9..169 | 97 | | Minus |
BS15921.5prime Sequence
909 bp (841 high quality bases) assembled on 2007-04-16
> BS15921.5prime
GAAGTTATCAGTCGACATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCC
CCCAGTTTATTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGAC
GACGGCCCACAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGC
CGACCTGGAGGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACG
CCGCCTTCTTTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCC
GCCCACATTGCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCA
GCAGATCGATGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGG
GCAATGGATACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCAT
GGCATTAGCATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTT
CCGCAAGAAGTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGT
CGTCGCTGTGCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCG
GCTAGCACGGGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCT
CTTCGAGCTGGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCC
TGGGCTTTCAGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGC
ATCAGCATGGCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGG
CCCCATCGTTAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTA
TGAATCCGGAACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCT
AAGATAGACTTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGAT
GCACAAGCT
BS15921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11055-PB | 2646 | CG11055-RB | 1..893 | 17..909 | 4465 | 100 | Plus |
CG11055-PA | 2646 | CG11055-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
CG11055-PC | 2646 | CG11055-RC | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsl-RC | 3613 | CG11055-RC | 201..1093 | 17..909 | 4465 | 100 | Plus |
Hsl-RA | 3554 | CG11055-RA | 142..1034 | 17..909 | 4465 | 100 | Plus |
Hsl-RB | 3522 | CG11055-RB | 110..1002 | 17..909 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20258193..20259085 | 17..909 | 4465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:36:08 has no hits.
BS15921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:19 Download gff for
BS15921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11055-PC | 1..893 | 17..909 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:08 Download gff for
BS15921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsl-RB | 106..1002 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:10 Download gff for
BS15921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsl-RB | 106..1002 | 9..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:10 Download gff for
BS15921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20258184..20259085 | 9..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:08 Download gff for
BS15921.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16145689..16146590 | 9..909 | 99 | | Plus |
BS15921.pep Sequence
Translation from 16 to 2661
> BS15921.pep
MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT
YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF
AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY
MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD
TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT
TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS
IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP
VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG
GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY
CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA
YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV
EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA
SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA
SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET
GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA
LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC
VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL
LQTDSKTKNIDKANSMDEEESSSPSASLAAS*
BS15921.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsl-PC | 881 | CG11055-PC | 1..881 | 1..881 | 4608 | 100 | Plus |
Hsl-PA | 881 | CG11055-PA | 1..881 | 1..881 | 4608 | 100 | Plus |
Hsl-PB | 881 | CG11055-PB | 1..881 | 1..881 | 4608 | 100 | Plus |