Clone BS15921 Report

Search the DGRC for BS15921

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptHsl-RA
Protein status:BS15921.pep: full length peptide match
Sequenced Size:2678

Clone Sequence Records

BS15921.complete Sequence

2678 bp assembled on 2009-12-07

GenBank Submission: KX801213

> BS15921.complete
GAAGTTATCAGTCGACATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCC
CCCAGTTTATTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGAC
GACGGCCCACAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGC
CGACCTGGAGGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACG
CCGCCTTCTTTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCC
GCCCACATTGCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCA
GCAGATCGATGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGG
GCAATGGATACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCAT
GGCATTAGCATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTT
CCGCAAGAAGTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGT
CGTCGCTGTGCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCG
GCTAGCACGGGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCT
CTTCGAGCTGGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCC
TGGGCTTTCAGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGC
ATCAGCATGGCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGG
CCCCATCGTTAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTA
TGAATCCGGAACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCT
AAGATAGACTTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGAT
GCACAAGCTGCCCAGCATTGTGGGCAGCTCCATTAAGGTAAACCGGCTCA
TCGAATTGCCAGCCGAGCCGCTAAAGCTGCCTCGCCGAAAGAATTTCAAG
GCATCGGACAATCTCAGCAGTGACGTTAACCAAAACCAAGGCGATGGTGA
TTTTGTGGAGATTCCCGTGCCCACGGCACATTTGGGACCTGGTTTACCGG
TCTCTGTTCGCTTGCTGAGCGCGAGACGACGTTCGGGAATGCTGGGCGAG
GGTCGCTATCGCGGCTGGCACAAGCCCATTCCGCCAAGTCCTTCGATTCT
GTTTCACTGCCATGGCGGTGGCTTTGTGGCCCAATCGTCCAAGTCCCACG
AACTGTATTTGCGCGACTGGGCCGTGGCACTGGACTGTCCTATTCTCTCG
GTGGATTACAGCCTAGCTCCTGAGGCGCCATTTCCACGCGCCCTGCAAGA
AGTTTACTACGCTTACTGCTGGCTTCTGAACAATACCGAACTCCTAGGCA
CAACAGCTGAGCGAGTTGTATGCGCAGGTGACTCGGCTGGGGCAAATCTG
TCAATTGGAGTAGCCCTCAAGTGCATTGAGCAGGGAGTTCGAGTGCCAGA
TGGTCTGTTTCTGGCCTACTGCCCAACTCTCGTCAGCTTTGTGCCCAGTC
CGGCCCGCCTTCTCTGTTTGATGGATCCCCTGCTGCCTTTCGGCTTCATG
ATGCGCTGCCTTCGTGCCTATGCCGCTCCCGCCCAGGAGACACTTCAGCA
GAATGCCAAGCAAGTCGAGGATGCCGCCCAGATACGCAATGTCCCCAAGT
CGAACGTGGGAAGCTTGAACTCCAGTCGCCGCACCTCGATGGCCAGAAGT
CCGCTTTCGCCGCTGGAAGCCAGCATGAACCCAGATGACGAAAGCAGCGA
CACCTTTGCCAGTGCCTCAGCCTCTTACCACAGCCAGACGGTGGAGCGTA
CCGATCTCCCCCACACCGAAGGCGACAACAGCTCGTGCGTCTCGTTCGAG
GATGATTCACAGCCCATTGTGCACTACCCAATCGAAATATCAGCCGACCC
ACCTAAGGATACCGCCTCTGCAGCCTATATTGACAATTTTCTGGACAAGT
ATCTCATTGACACGGCCACAATGGAGGTAACCGAAGAGACAGCTCCCGAA
GCGGTGCAAGCGCAGGCAAATGGACATGCGAAGATCAGTTCCGATGATGA
TATTCTAGTGGAGACTGGTCGGGATCTTGTTGCAATAGATACGCTGCAAG
GCCGCCTGCAGGAAGCCGTCAACAACATAACCAACACCTTGACGCGCTGC
ACGCAGTCCTACGAGATTCACGGAAGCAACGTGATGGCTCAACAGGATGT
GCGCAACATGGACGCACTGATAGCACGGAGTCCCAGCGAGGAGTTTGCAT
TCGATGTGCCTAAGGATCCATTCCTGTCGCCGTACTGGGCCAGTGATGAG
TGGCTTTCCCAACTGCCGGAGACCAAAATACTTACACTTAACATGGACCC
CTGTCTGGATGATTGCGTTATGTTTGCCAAGAAACTGAAGCGGCTTGGGC
GACAAGTTGACTTGGAAATACTTGAGGGGTTGCCGCACGGATTCCTAAAT
TTCACAATGTTATCCAACGAAGCCATGGAGGGCTCAAAGAAGTGCATCAA
ATCTCTACAGACGTTGCTTCAAACCGATTCGAAGACCAAGAACATTGACA
AAGCCAACTCGATGGACGAGGAGGAGTCCTCCAGTCCCAGTGCAAGTCTA
GCCGCTTCATAGAAGCTTTCTAGACCAT

BS15921.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-RC 2646 CG11055-PC 1..2646 17..2662 13230 100 Plus
Hsl-RA 2646 CG11055-PA 1..2646 17..2662 13230 100 Plus
Hsl-RB 2646 CG11055-PB 1..2646 17..2662 13230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-RC 3613 CG11055-RC 201..2846 17..2662 13230 100 Plus
Hsl-RA 3554 CG11055-RA 142..2787 17..2662 13230 100 Plus
Hsl-RB 3522 CG11055-RB 110..2755 17..2662 13230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20258193..20260559 17..2383 11835 100 Plus
2R 25286936 2R 20260806..20260959 2509..2662 770 100 Plus
2R 25286936 2R 20260621..20260750 2384..2513 635 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 01:45:35 has no hits.

BS15921.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:40 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RC 1..2646 17..2662 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:04 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RC 201..2846 17..2662 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:56 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 110..2755 17..2662 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:05 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RC 201..2846 17..2662 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:10 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 110..2755 17..2662 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:10 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20258193..20260559 17..2383 100 -> Plus
2R 20260621..20260746 2384..2509 100 -> Plus
2R 20260807..20260959 2510..2662 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:56 Download gff for BS15921.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16145698..16148064 17..2383 100 -> Plus
arm_2R 16148126..16148251 2384..2509 100 -> Plus
arm_2R 16148312..16148464 2510..2662 100   Plus

BS15921.3prime Sequence

814 bp (813 high quality bases) assembled on 2007-04-16

> BS15921.3prime
ATGGTCTAGAAAGCTTCTATGAAGCGGCTAGACTTGCACTGGGACTGGAG
GACTCCTCCTCGTCCATCGAGTTGGCTTTGTCAATGTTCTTGGTCTTCGA
ATCGGTTTGAAGCAACGTCTGTAGAGATTTGATGCACTTCTTTGAGCCCT
CCATGGCTTCGTTGGATAACATTGTGAAATTTAGGAATCCGTGCGGCAAC
CCCTCAAGTATTTCCAAGTCAACTTGTCGCCCAAGCCGCTTCAGTTTCTT
GGCAAACATAACGCAATCATCCAGACAGGGGTCCATGTTAAGTGTAAGTA
TTTTGGTCTCCGGCAGTTGGGAAAGCCACTCATCACTGGCCCAGTACGGC
GACAGGAATGGATCCTTAGGCACATCGAATGCAAACTCCTCGCTGGGACT
CCGTGCTATCAGTGCGTCCATGTTGCGCACATCCTGTTGAGCCATCACGT
TGCTTCCGTGAATCTCGTAGGACTGCGTGCAGCGCGTCAAGGTGTTGGTT
ATGTTGTTGACGGCTTCCTGCAGGCGGCCTTGCAGCGTATCTATTGCAAC
AAGATCCCGACCAGTCTCCACTAGAATATCATCATCGGAACTGATCTTCG
CATGTCCATTTGCCTGCGCTTGCACCGCTTCGGGAGCTGTCTCTTCGGTT
ACCTCCATTGTGGCCGTGTCAATGAGATACTTGTCCAGAAAATTGTCAAT
ATAGGCTGCAGAGGCGGTATCCTTAGGTGGGTCGGCTGATATTTCGATTG
GGTAGTGCACAATGGGCTGTGAATCATCCTCGAACGAGACGCACGAGCTG
TTGTCGCCTTCGGT

BS15921.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11055-PB 2646 CG11055-RB 1849..2646 814..17 3990 100 Minus
CG11055-PA 2646 CG11055-RA 1849..2646 814..17 3990 100 Minus
CG11055-PC 2646 CG11055-RC 1849..2646 814..17 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:54
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-RC 3613 CG11055-RC 2049..2846 814..17 3990 100 Minus
Hsl-RA 3554 CG11055-RA 1990..2787 814..17 3990 100 Minus
Hsl-RB 3522 CG11055-RB 1958..2755 814..17 3990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20260041..20260559 814..296 2595 100 Minus
2R 25286936 2R 20260806..20260959 170..17 770 100 Minus
2R 25286936 2R 20260621..20260750 295..166 635 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 05:00:51 has no hits.

BS15921.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:19 Download gff for BS15921.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11055-PC 1849..2646 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:39 Download gff for BS15921.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 1958..2765 9..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:09 Download gff for BS15921.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 1958..2765 9..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:09 Download gff for BS15921.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20260041..20260559 296..814 100 -> Minus
2R 20260621..20260746 170..295 100 -> Minus
2R 20260807..20260969 9..169 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:39 Download gff for BS15921.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16147546..16148064 296..814 100 -> Minus
arm_2R 16148126..16148251 170..295 100 -> Minus
arm_2R 16148312..16148474 9..169 97   Minus

BS15921.5prime Sequence

909 bp (841 high quality bases) assembled on 2007-04-16

> BS15921.5prime
GAAGTTATCAGTCGACATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCC
CCCAGTTTATTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGAC
GACGGCCCACAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGC
CGACCTGGAGGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACG
CCGCCTTCTTTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCC
GCCCACATTGCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCA
GCAGATCGATGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGG
GCAATGGATACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCAT
GGCATTAGCATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTT
CCGCAAGAAGTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGT
CGTCGCTGTGCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCG
GCTAGCACGGGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCT
CTTCGAGCTGGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCC
TGGGCTTTCAGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGC
ATCAGCATGGCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGG
CCCCATCGTTAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTA
TGAATCCGGAACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCT
AAGATAGACTTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGAT
GCACAAGCT

BS15921.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11055-PB 2646 CG11055-RB 1..893 17..909 4465 100 Plus
CG11055-PA 2646 CG11055-RA 1..893 17..909 4465 100 Plus
CG11055-PC 2646 CG11055-RC 1..893 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-RC 3613 CG11055-RC 201..1093 17..909 4465 100 Plus
Hsl-RA 3554 CG11055-RA 142..1034 17..909 4465 100 Plus
Hsl-RB 3522 CG11055-RB 110..1002 17..909 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20258193..20259085 17..909 4465 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:36:08 has no hits.

BS15921.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:19 Download gff for BS15921.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11055-PC 1..893 17..909 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:08 Download gff for BS15921.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 106..1002 9..909 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:10 Download gff for BS15921.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 106..1002 9..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:10 Download gff for BS15921.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20258184..20259085 9..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:08 Download gff for BS15921.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16145689..16146590 9..909 99   Plus

BS15921.pep Sequence

Translation from 16 to 2661

> BS15921.pep
MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT
YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF
AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY
MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD
TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT
TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS
IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP
VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG
GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY
CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA
YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV
EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA
SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA
SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET
GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA
LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC
VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL
LQTDSKTKNIDKANSMDEEESSSPSASLAAS*

BS15921.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-PC 881 CG11055-PC 1..881 1..881 4608 100 Plus
Hsl-PA 881 CG11055-PA 1..881 1..881 4608 100 Plus
Hsl-PB 881 CG11055-PB 1..881 1..881 4608 100 Plus