Clone Sequence Records
BS15926.3prime Sequence
804 bp (778 high quality bases) assembled on 2007-04-16
> BS15926.3prime
ATGGTCTAGAAAGCTTCTATGCCTGCTTCTTTGAGCTCAAGGCTTGGCCT
TCTTTGCTCAGCTTTGTGTACTCCGTCTGCATGATGGACTGGCATTCGTC
GATCAGCAGCTGCACGTCCTCCCTCTTGTACTTCTCGGTGGACACCTCGG
GTAGGATGTGGATTAGGGCGTGGCCAGGACGGAATGTCTTTTTCTCGTCA
TCCATGAATGAGTACTTCGATATGACCACCGGCTGAACGGGGCTCTTGCC
CTGCAGTGCGATGTGGAATGAGCCCTTCTTGAAGGGCAGCAACGAGTCCT
TGGAGTTGCGCGTTCCCTCAGGGAAGAGCAGTAGCTTGCAGTTGCGCTCC
TGTATCGCCTTCGCCTCCTTTTGCAGAGAGTTGATCGAGTCGGTCTTGCG
GGAGCGGTCGATGTATAGGGTACCCCAGAGCCATGCTCCAATGCCAAAGA
ATGGGATGTAGAGAACCTCCTTCTTGGAGACAACTGTTGCTCTTCCGATC
ACAGGCCACAAATAGGCCAGAACGCAAAGATCAACAGCACTTTGGTGGTT
CATTATCACCACTGCCCCATGGTCCTTACGGACATTCTCCAGACCACGAA
CCTCCATTGTTATGCCCACCAGGCGGCAAAGCTGCCGGAAGCACCATGAT
GGAAAAAGCGCATTTCGATAGTCTCGCGGTCGCAGAATCATAAAGGGCAC
GCACAGAAAGACTATCAGACCAGCTCCAAAAAATATAAAGAACATGCGCA
TCTGATAGGGAGCCTTGGCCGTGGCGCTTAGGATAAAGCCACCACGCAGG
CCAG
BS15926.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17608-PA | 816 | fu12-RA | 28..816 | 804..17 | 3905 | 99.8 | Minus |
CG17608-PB | 816 | fu12-RB | 28..816 | 804..17 | 3905 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fu12-RC | 2065 | CG17608-RC | 879..1667 | 804..17 | 3920 | 99.9 | Minus |
fu12-RD | 1311 | CG17608-RD | 125..913 | 804..17 | 3920 | 99.9 | Minus |
fu12-RB | 1335 | CG17608-RB | 149..937 | 804..17 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8450089..8450728 | 17..656 | 3200 | 100 | Plus |
2L | 23513712 | 2L | 8450794..8450942 | 657..804 | 695 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:07:20 has no hits.
BS15926.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:21 Download gff for
BS15926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17608-PB | 28..816 | 17..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:56:53 Download gff for
BS15926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 149..941 | 12..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:27:21 Download gff for
BS15926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 149..941 | 12..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:27:21 Download gff for
BS15926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8450085..8450728 | 12..656 | 99 | <- | Plus |
2L | 8450794..8450942 | 657..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:56:53 Download gff for
BS15926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8450794..8450942 | 657..804 | 99 | | Plus |
arm_2L | 8450085..8450728 | 12..656 | 99 | <- | Plus |
BS15926.5prime Sequence
814 bp (795 high quality bases) assembled on 2007-04-16
> BS15926.5prime
GAAGTTATCAGTCGACATGGCTTGTACATGCGAAGTTATTGGACTGGCCT
GCGTGGTGGCTTTAATCCTAAGCGCCACGGCCAAGGCTCCCTATCAGATG
CGCATGTTCTTTATATTTTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGT
GCCCTTTATGATTCTGCGACCGCGAGACTATCGAAATGCGCTTTTTCCAT
CATGGTGCTTCCGGCAGCTTTGCCGCCTGGTGGGCATAACAATGGAGGTT
CGTGGTCTGGAGAATGTCCGTAAGGACCATGGGGCAGTGGTGATAATGAA
CCACCAAAGTGCTGTTGATCTTTGCGTTCTGGCCTATTTGTGGCCTGTGA
TCGGAAGAGCAACAGTTGTCTCCAAGAAGGAGGTTCTCTACATCCCATTC
TTTGGCATTGGAGCATGGCTCTGGGGTACCCTATACATCGACCGCTCCCG
CAAGACCGACTCGATCAACTCTCTGCAAAAGGAGGCGAAGGCGATACAGG
AGCGCAACTGCAAGCTACTGCTCTTCCCTGAGGGAACGCGCAACTCCAAG
GACTCGTTGCTGCCCTTCAAGAAGGGCTCATTCCACATCGCACTGCAGGG
CAAGAGCCCCGTTCAGCCGGTGGTCATATCGAAGTACTCATTCATGGATG
ACGAGAAAAAGACATTCCGTCCTGGCCACGCCCTAATCCACATCCTACCC
GAGGTGTCCACCGAGAAGTACAAGAGGGAGGACGTGCAGCTGCTGATCGA
CGAATGCCAGTCCATCATGCAGACGGAGTACACAAAGCTGAGCAAAGAAG
GCCAAGCCTTGAGC
BS15926.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17608-PA | 816 | fu12-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG17608-PB | 816 | fu12-RB | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fu12-RC | 2065 | CG17608-RC | 852..1649 | 17..814 | 3990 | 100 | Plus |
fu12-RD | 1311 | CG17608-RD | 98..895 | 17..814 | 3990 | 100 | Plus |
fu12-RB | 1335 | CG17608-RB | 122..919 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8450107..8450728 | 814..193 | 3110 | 100 | Minus |
2L | 23513712 | 2L | 8450794..8450969 | 192..17 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:57:04 has no hits.
BS15926.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:21 Download gff for
BS15926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17608-PB | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:08 Download gff for
BS15926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 122..919 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:28:32 Download gff for
BS15926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 122..919 | 17..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:28:32 Download gff for
BS15926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8450107..8450728 | 193..814 | 100 | <- | Minus |
2L | 8450794..8450969 | 17..192 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:08 Download gff for
BS15926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8450107..8450728 | 193..814 | 100 | <- | Minus |
arm_2L | 8450794..8450969 | 17..192 | 100 | | Minus |
BS15926.complete Sequence
848 bp assembled on 2007-05-07
GenBank Submission: FJ637987
> BS15926.complete
GAAGTTATCAGTCGACATGGCTTGTACATGCGAAGTTATTGGACTGGCCT
GCGTGGTGGCTTTAATCCTAAGCGCCACGGCCAAGGCTCCCTATCAGATG
CGCATGTTCTTTATATTTTTTGGAGCTGGTCTGATAGTCTTTCTGTGCGT
GCCCTTTATGATTCTGCGACCGCGAGACTATCGAAATGCGCTTTTTCCAT
CATGGTGCTTCCGGCAGCTTTGCCGCCTGGTGGGCATAACAATGGAGGTT
CGTGGTCTGGAGAATGTCCGTAAGGACCATGGGGCAGTGGTGATAATGAA
CCACCAAAGTGCTGTTGATCTTTGCGTTCTGGCCTATTTGTGGCCTGTGA
TCGGAAGAGCAACAGTTGTCTCCAAGAAGGAGGTTCTCTACATCCCATTC
TTTGGCATTGGAGCATGGCTCTGGGGTACCCTATACATCGACCGCTCCCG
CAAGACCGACTCGATCAACTCTCTGCAAAAGGAGGCGAAGGCGATACAGG
AGCGCAACTGCAAGCTACTGCTCTTCCCTGAGGGAACGCGCAACTCCAAG
GACTCGTTGCTGCCCTTCAAGAAGGGCTCATTCCACATCGCACTGCAGGG
CAAGAGCCCCGTTCAGCCGGTGGTCATATCGAAGTACTCATTCATGGATG
ACGAGAAAAAGACATTCCGTCCTGGCCACGCCCTAATCCACATCCTACCC
GAGGTGTCCACCGAGAAGTACAAGAGGGAGGACGTGCAGCTGCTGATCGA
CGAATGCCAGTCCATCATGCAGACGGAGTACACAAAGCTGAGCAAAGAAG
GCCAAGCCTTGAGCTCAAAGAAGCAGGCATAGAAGCTTTCTAGACCAT
BS15926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fu12-RC | 816 | CG17608-PC | 1..816 | 17..832 | 4080 | 100 | Plus |
fu12-RD | 816 | CG17608-PD | 1..816 | 17..832 | 4080 | 100 | Plus |
fu12-RB | 816 | CG17608-PB | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fu12-RC | 2065 | CG17608-RC | 852..1667 | 17..832 | 4080 | 100 | Plus |
fu12-RD | 1311 | CG17608-RD | 98..913 | 17..832 | 4080 | 100 | Plus |
fu12-RB | 1335 | CG17608-RB | 122..937 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8450089..8450728 | 832..193 | 3200 | 100 | Minus |
2L | 23513712 | 2L | 8450794..8450969 | 192..17 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:13 has no hits.
BS15926.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:48 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:51 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 122..941 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:40 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 122..937 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:49 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 122..941 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:12 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fu12-RB | 122..937 | 17..832 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:12 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8450089..8450728 | 193..832 | 100 | <- | Minus |
2L | 8450794..8450969 | 17..192 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:40 Download gff for
BS15926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8450089..8450728 | 193..832 | 100 | <- | Minus |
arm_2L | 8450794..8450969 | 17..192 | 100 | | Minus |
BS15926.pep Sequence
Translation from 16 to 831
> BS15926.pep
MACTCEVIGLACVVALILSATAKAPYQMRMFFIFFGAGLIVFLCVPFMIL
RPRDYRNALFPSWCFRQLCRLVGITMEVRGLENVRKDHGAVVIMNHQSAV
DLCVLAYLWPVIGRATVVSKKEVLYIPFFGIGAWLWGTLYIDRSRKTDSI
NSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ
PVVISKYSFMDDEKKTFRPGHALIHILPEVSTEKYKREDVQLLIDECQSI
MQTEYTKLSKEGQALSSKKQA*
BS15926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fu12-PC | 271 | CG17608-PC | 1..271 | 1..271 | 1410 | 100 | Plus |
fu12-PD | 271 | CG17608-PD | 1..271 | 1..271 | 1410 | 100 | Plus |
fu12-PB | 271 | CG17608-PB | 1..271 | 1..271 | 1410 | 100 | Plus |
fu12-PA | 271 | CG17608-PA | 1..271 | 1..271 | 1410 | 100 | Plus |
CG3812-PC | 343 | CG3812-PC | 4..267 | 1..261 | 426 | 36 | Plus |