Clone BS15933 Report

Search the DGRC for BS15933

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG31813-RA
Protein status:BS15933.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15933.3prime Sequence

549 bp (549 high quality bases) assembled on 2007-04-16

> BS15933.3prime
ATGGTCTAGAAAGCTTTTAGGCCTTGTTGCCCTTGCCGGAACGCCTCTTC
ACGGAGGTGCGACGGCGAGCACCGCCACGACCACGTCGTCCACCGCGCCT
GCGTCCACCTCGTCGTCCGCCACGGCGCACGGATTTGCGTGCACTACGAC
GACCTCCACGGCGACCACCGCGGCGTCCACCACGACGACGACCGGCACGA
ACGATGCGGCGGGCACGGGCGTCATCCTTGTTGGGCTTCACGATGGTGTC
CTTGTTGTTGGTGGCGGTCTCCTTGTCCTCTTTGTTGTCGCTGCCCTCGG
CAACATCATCGCTGCGTCCCTCCAGTCTGTCATTCTGCTCCTCCTGCTCC
TGGCGCTCCAGGTCTTGCTCCTGGGCGGCCAGCTCGGAGTCTTCCTTGTT
GTCCGACGTCTTCTCGACCAGCTCGGAGCCACGGCGAGAGCTGAGAACTC
GGCTGCGCTGGGCCGCCGCCTCGGTGGAGAACACCAGACAGCAGAGAGCC
GCCAGGGCAAAGATCAGTGTATATTTGGCTGACATGTCGACTGATAACT

BS15933.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PA 519 CG31813-RA 1..519 535..17 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 893 CG31813-RB 52..574 539..17 2600 99.8 Minus
CG31813-RA 653 CG31813-RA 52..574 539..17 2600 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736189..13736711 539..17 2600 99.8 Minus
Blast to na_te.dros performed 2015-02-12 17:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 382..427 113 71.7 Plus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 75..207 106 55.7 Plus

BS15933.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:26 Download gff for BS15933.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-PA 1..519 17..535 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:28 Download gff for BS15933.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..580 11..543 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:29:28 Download gff for BS15933.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..580 11..543 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:29:28 Download gff for BS15933.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13736186..13736717 11..543 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:28 Download gff for BS15933.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736186..13736717 11..543 99   Minus

BS15933.5prime Sequence

549 bp (549 high quality bases) assembled on 2007-04-16

> BS15933.5prime
GAAGTTATCAGTCGACATGTCAGCCAAATATACACTGATCTTTGCCCTGG
CGGCTCTCTGCTGTCTGGTGTTCTCCACCGAGGCGGCGGCCCAGCGCAGC
CGAGTTCTCAGCTCTCGCCGTGGCTCCGAGCTGGTCGAGAAGACGTCGGA
CAACAAGGAAGACTCCGAGCTGGCCGCCCAGGAGCAAGACCTGGAGCGCC
AGGAGCAGGAGGAGCAGAATGACAGACTGGAGGGACGCAGCGATGATGTT
GCCGAGGGCAGCGACAACAAAGAGGACAAGGAGACCGCCACCAACAACAA
GGACACCATCGTGAAGCCCAACAAGGATGACGCCCGTGCCCGCCGCATCG
TTCGTGCCGGTCGTCGTCGTGGTGGACGCCGCGGTGGTCGCCGTGGAGGT
CGTCGTAGTGCACGCAAATCCGTGCGCCGTGGCGGACGACGAGGTGGACG
CAGGCGCGGTGGACGACGTGGTCGTGGCGGTGCTCGCCGTCGCACCTCCG
TGAAGAGGCGTTCCGGCAAGGGCAACAAGGCCTAAAAGCTTTCTAGACC

BS15933.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PA 519 CG31813-RA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 893 CG31813-RB 52..574 13..535 2600 99.8 Plus
CG31813-RA 653 CG31813-RA 52..574 13..535 2600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736189..13736711 13..535 2600 99.8 Plus
Blast to na_te.dros performed 2015-02-10 15:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 170..125 113 71.7 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 477..345 106 55.7 Minus

BS15933.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:26 Download gff for BS15933.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-PA 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:55:10 Download gff for BS15933.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..580 9..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:11 Download gff for BS15933.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 49..580 9..541 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:11 Download gff for BS15933.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13736186..13736717 9..541 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:55:10 Download gff for BS15933.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736186..13736717 9..541 99   Plus

BS15933.complete Sequence

551 bp assembled on 2007-05-07

> BS15933.complete
GAAGTTATCAGTCGACATGTCAGCCAAATATACACTGATCTTTGCCCTGG
CGGCTCTCTGCTGTCTGGTGTTCTCCACCGAGGCGGCGGCCCAGCGCAGC
CGAGTTCTCAGCTCTCGCCGTGGCTCCGAGCTGGTCGAGAAGACGTCGGA
CAACAAGGAAGACTCCGAGCTGGCCGCCCAGGAGCAAGACCTGGAGCGCC
AGGAGCAGGAGGAGCAGAATGACAGACTGGAGGGACGCAGCGATGATGTT
GCCGAGGGCAGCGACAACAAAGAGGACAAGGAGACCGCCACCAACAACAA
GGACACCATCGTGAAGCCCAACAAGGATGACGCCCGTGCCCGCCGCATCG
TTCGTGCCGGTCGTCGTCGTGGTGGACGCCGCGGTGGTCGCCGTGGAGGT
CGTCGTAGTGCACGCAAATCCGTGCGCCGTGGCGGACGACGAGGTGGACG
CAGGCGCGGTGGACGACGTGGTCGTGGCGGTGCTCGCCGTCGCACCTCCG
TGAAGAGGCGTTCCGGCAAGGGCAACAAGGCCTAAAAGCTTTCTAGACCA
T

BS15933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 519 CG31813-PB 1..519 17..535 2595 100 Plus
CG31813-RA 519 CG31813-PA 1..519 17..535 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-RB 893 CG31813-RB 52..574 13..535 2600 99.8 Plus
CG31813-RA 653 CG31813-RA 52..574 13..535 2600 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13736189..13736711 13..535 2600 99.8 Plus
Blast to na_te.dros performed 2014-11-27 20:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3493..3538 170..125 113 71.7 Minus
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 7555..7693 477..345 106 55.7 Minus

BS15933.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:42 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 1..519 17..535 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:58:45 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 47..578 9..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:22 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 56..572 17..533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:42 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 47..578 9..541 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:33 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
CG31813-RA 56..572 17..533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:33 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13736193..13736709 17..533 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:22 Download gff for BS15933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13736193..13736709 17..533 100   Plus

BS15933.pep Sequence

Translation from 16 to 534

> BS15933.pep
MSAKYTLIFALAALCCLVFSTEAAAQRSRVLSSRRGSELVEKTSDNKEDS
ELAAQEQDLERQEQEEQNDRLEGRSDDVAEGSDNKEDKETATNNKDTIVK
PNKDDARARRIVRAGRRRGGRRGGRRGGRRSARKSVRRGGRRGGRRRGGR
RGRGGARRRTSVKRRSGKGNKA*

BS15933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31813-PB 172 CG31813-PB 1..172 1..172 862 100 Plus
CG31813-PA 172 CG31813-PA 1..172 1..172 862 100 Plus