Clone BS15934 Report

Search the DGRC for BS15934

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG3332-RB
Protein status:BS15934.pep: full length peptide match
Sequenced Size:1922

Clone Sequence Records

BS15934.complete Sequence

1922 bp assembled on 2009-12-07

GenBank Submission: KX804323

> BS15934.complete
GAAGTTATCAGTCGACATGGTGGACCGCAACAGTGGAGTTCAATACGAAA
GAATGCCGACTGTTACTTTCAGTAACCTGCAGGGAACAGCGAGCGGCAGC
ACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATGGATC
CACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAACAAA
AGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACTGTCG
GCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGATCAC
GGAAGTTATATCCGATCAGATACCGACCTATGTGTACCAGGGATTCTACG
TATACCTCTATGTGGGCAGCATACTCTTTGTGATCTTTCTGTACATTAGT
GCCTTCCGTAATCGATCGCTCTTCAATGCCTTAAAGGACTATCACGAAAA
GAACAGCAATGTGCATCTGAAGCACAAGGTAACCCATTTTGGCAGCTTTT
ACTTGAGAGTGGGAGCCATCGCCTTCGCCATTGGAACTATGGTGTATTCG
GGCCTGGAGTTTGGCCAGTTCTTCGAGCTGAATGGCCATCCCGGATGCCG
GGATGTCTTCGTGGCCATTACACCCATCTGCCGGATGGTCCTGTGCATCG
CCCAGGTGCAGTTCATCTTCTTGAACACCACCTACATGGACATGGCCCGG
CACAAGGTGACCTCCCGCTTCGGACTCATGCACATGGTGGCCACCAACTT
GTGTGAGTGGCTGTACGTCCTGGTGGAGGAGACCAAGCACGAAATTTTCC
ACATCAGCCAGCACGAAGTGGATCCCGCCCACGACCTGGTCATTCATAAT
AGCTCCATGAGTAGAACGGACTGGGCCGCTGTCAATGAGTCCCTGCATCA
GCATCATCATCATCATGCCCTTAATAACACCCTGGTGGCCAATGTGAGTT
CTGTGATTGTGAATATGACCATTACTCCGTCGCCCACGCCGGCTGCCTTC
AGCGGCTGCTCCCGCACCACGATTATGGGTGCTCTGGTGCAGCAACTTTC
GCCATTCCTGTTCCCCTGCACCATCGAGTACTCCCTCATATGCGCCGTAA
TCCTCTTCGAGATGTGGAAGACGGTCAAATCGATTCCGGACATCGACAAG
ACGCGCAAGAATTCCGTCAAGCCCGCTGCTGCCAAGCCTGCCCATCACTT
CTCCGTGGACTGTTCCCAGTCGCACAAGGGACTCTTCTTCGGGATCCTGA
TCATAGTCATGACCATTATCTCGATGATCATGTACTTTGTGCTGTACACC
CAGCCGGGCTATGAACTGGTGGCCACACAGGAGGTCACTCTGTGGGAGAC
CTTCATGTACTTTATGTGCGCAGCGGCTGTGATAACGGGCATGATCCTCA
TGCGCGATCTGCGCTACATTAAGAACACCAGCGACGAGCACCACTCGATG
GATCTGGACAATCTCCTGCTGATTGTGGCCCAGACCGGGGTGTACCTGTA
CGGAATGTTCAGCATCCTGGGCAGTTACTTCGCCAAATGGGACACAGTGC
CCGACCGGGTGGAGGGCATTATAGCGGAGGTCTTTGGAGTGGTGCAGACC
TCGCTGCAGACCATGTTCATCCTGCATTCCAGCCATCGGCGCTGCAGGGG
CACCAATCAGGTGAGAAGGAAGCCCGGCAGGGAGATCATCACGTTCTTGC
TGGTGGCCAACATTGCCATCTGGTTCGTAAACACCCTGATCAAGGGACGA
GCCGTCTTCAGGGAGAGCCATTTGGAGTTCTTTGGAGTCTGGGGCTGGAC
GATCATCACCCACATCTCCATGCCGCTGGCCATTTTCTACCGCTTCCATT
CGACCATTTGCCTCTTCGAGGTGTGGAAAATCACGTACAAGGCCAAGGCG
CATTAGAAGCTTTCTAGACCAT

BS15934.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RB 1890 CG3332-PB 1..1890 17..1906 9450 100 Plus
CG3332-RC 2391 CG3332-PC 557..2391 72..1906 9175 100 Plus
CG3332-RA 2394 CG3332-PA 560..2394 72..1906 9175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RB 2216 CG3332-RB 172..2061 17..1906 9450 100 Plus
CG3332-RC 2653 CG3332-RC 664..2498 72..1906 9175 100 Plus
CG3332-RA 2656 CG3332-RA 667..2501 72..1906 9175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3276532..3277477 1389..444 4730 100 Minus
2L 23513712 2L 3275955..3276473 1906..1388 2595 100 Minus
2L 23513712 2L 3277543..3277760 443..226 1090 100 Minus
2L 23513712 2L 3277829..3277987 225..67 795 100 Minus
2L 23513712 2L 3280308..3280363 72..17 280 100 Minus
X 23542271 X 5653915..5654003 1878..1790 205 82 Minus
Blast to na_te.dros performed on 2014-11-28 01:36:24 has no hits.

BS15934.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:43 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 1..1890 17..1906 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:49 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 171..2060 17..1906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:31 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 172..2061 17..1906 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:44 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 171..2060 17..1906 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:34 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 172..2061 17..1906 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:34 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3277829..3277981 73..225 100 <- Minus
2L 3280308..3280363 17..72 100   Minus
2L 3275955..3276472 1389..1906 100 <- Minus
2L 3276533..3277477 444..1388 100 <- Minus
2L 3277543..3277760 226..443 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:31 Download gff for BS15934.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3275955..3276472 1389..1906 100 <- Minus
arm_2L 3276533..3277477 444..1388 100 <- Minus
arm_2L 3277543..3277760 226..443 100 <- Minus
arm_2L 3277829..3277981 73..225 100 <- Minus
arm_2L 3280308..3280363 17..72 100   Minus

BS15934.3prime Sequence

912 bp (855 high quality bases) assembled on 2007-04-16

> BS15934.3prime
ATGGTCTAGAAAGCTTCTAATGCGCCTTGGCCTTGTACGTGATTTTCCAC
ACCTCGAAGAGGCAAATGGTCGAATGGAAGCGGTAGAAAATGGCCAGCGG
CATGGAGATGTGGGTGATGATCGTCCAGCCCCAGACTCCAAAGAACTCCA
AATGGCTCTCCCTGAAGACGGCTCGTCCCTTGATCAGGGTGTTTACGAAC
CAGATGGCAATGTTGGCCACCAGCAAGAACGTGATGATCTCCCTGCCGGG
CTTCCTTCTCACCTGATTGGTGCCCCTGCAGCGCCGATGGCTGGAATGCA
GGATGAACATGGTCTGCAGCGAGGTCTGCACCACTCCAAAGACCTCCGCT
ATAATGCCCTCCACCCGGTCGGGCACTGTGTCCCATTTGGCGAAGTAACT
GCCCAGGATGCTGAACATTCCGTACAGGTACACCCCGGTCTGGGCCACAA
TCAGCAGGAGATTGTCCAGATCCATCGAGTGGTGCTCGTCGCTGGTGTTC
TTAATGTAGCGCAGATCGCGCATGAGGATCATGCCCGTTATCACAGCCGC
TGCGCACATAAAGTACATGAAGGTCTCCCACAGAGTGACCTCCTGTGTGG
CCACCAGTTCATAGCCCGGCTGGGTGTACAGCACAAAGTACATGATCATC
GAGATAATGGTCATGACTATGATCAGGATCCCGAAGAAGAGTCCCTTGTG
CGACTGGGAACAGTCCACGGAGAAGTGATGGGCAGGCTTGGCAGCAGCGG
GCTTGACGGAATTCTTGCGCGTCTTGTCGATGTCCGGAATCGATTTGACC
GTCTTCCACATCTCGAAGAGGATTACGGCGCATATGAGGGAGTACTCGAT
GGTGCAGGGGAACAGGAATGGCGAAAGTTGCTGCACCAGAGCACCCATAA
TCGTGGTGCGGG

BS15934.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-PB 1890 CG3332-RB 995..1890 912..17 4480 100 Minus
CG3332-PA 2394 CG3332-RA 1499..2394 912..17 4480 100 Minus
CG17758-PA 1932 CG17758-RA 811..845 874..840 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RD 2206 CG3332-RD 1156..2051 912..17 4480 100 Minus
CG3332-RC 2653 CG3332-RC 1603..2498 912..17 4480 100 Minus
CG3332-RA 2656 CG3332-RA 1606..2501 912..17 4480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3275955..3276473 17..535 2595 100 Plus
2L 23513712 2L 3276532..3276910 534..912 1895 100 Plus
X 23542271 X 5653915..5654003 45..133 205 82 Plus
Blast to na_te.dros performed on 2015-02-12 10:12:59 has no hits.

BS15934.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:26 Download gff for BS15934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-PA 1499..2394 17..912 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:39 Download gff for BS15934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 1166..2065 13..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:15 Download gff for BS15934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RA 1606..2505 13..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:15 Download gff for BS15934.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3275951..3276472 13..534 99 <- Plus
2L 3276533..3276910 535..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:39 Download gff for BS15934.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3275951..3276472 13..534 99 <- Plus
arm_2L 3276533..3276910 535..912 100   Plus

BS15934.5prime Sequence

920 bp (778 high quality bases) assembled on 2007-04-16

> BS15934.5prime
GAAGTTATCAGTCGACATGGTGGACCGCAACAGTGGAGTTCAATACGAAA
GAATGCCGACTGTTACTTTCAGTAACCTGCAGGGAACAGCGAGCGGCAGC
ACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATGGATC
CACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAACAAA
AGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACTGTCG
GCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGATCAC
GGAAGTTATATCCGATCAGATACCGACCTATGTGTACCAGGGATTCTACG
TATACCTCTATGTGGGCAGCATACTCTTTGTGATCTTTCTGTACATTAGT
GCCTTCCGTAATCGATCGCTCTTCAATGCCTTAAAGGACTATCACGAAAA
GAACAGCAATGTGCATCTGAAGCACAAGGTAACCCATTTTGGCAGCTTTT
ACTTGAGAGTGGGAGCCATCGCCTTCGCCATTGGAACTATGGTGTATTCG
GGCCTGGAGTTTGGCCAGTTCTTCGAGCTGAATGGCCATCCCGGATGCCG
GGATGTCTTCGTGGCCATTACACCCATCTGCCGGATGGTCCTGTGCATCG
CCCAGGTGCAGTTCATCTTCTTGAACACCACCTACATGGACATGGCCCGG
CACAAGGTGACCTCCCGCTTCGGACTCATGCACATGGTGGCCACCAACTT
GTGTGAGTGGCTGTACGTCCTGGTGGAGGAGACCCAGCACGAAATTTTCC
ACATCAGCCAGCACGAAGTGGATCCCGCCCACGACCTGNTCATTCATAAT
AGCTCCATGAGTAGAACGGACTGGGCCGCTGTTCATGAGTCCCTGCATCA
GCATCATCATCATCATGCCC

BS15934.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-PB 1890 CG3332-RB 1..904 17..920 4426 99.5 Plus
CG3332-PA 2394 CG3332-RA 560..1408 72..920 4151 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-RB 2216 CG3332-RB 172..1075 17..920 4464 99.6 Plus
CG3332-RC 2653 CG3332-RC 664..1512 72..920 4189 99.5 Plus
CG3332-RA 2656 CG3332-RA 667..1515 72..920 4189 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3277001..3277477 920..444 2329 99.2 Minus
2L 23513712 2L 3277543..3277760 443..226 1090 100 Minus
2L 23513712 2L 3277829..3277987 225..67 795 100 Minus
2L 23513712 2L 3280308..3280363 72..17 280 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:13:45 has no hits.

BS15934.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:27 Download gff for BS15934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-PB 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:30 Download gff for BS15934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 167..1075 9..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:30:25 Download gff for BS15934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3332-RB 167..1075 9..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:25 Download gff for BS15934.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3277001..3277477 444..920 99 <- Minus
2L 3277543..3277760 226..443 100 <- Minus
2L 3277829..3277981 73..225 100 <- Minus
2L 3280308..3280368 9..72 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:30 Download gff for BS15934.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3277001..3277477 444..920 99 <- Minus
arm_2L 3277543..3277760 226..443 100 <- Minus
arm_2L 3277829..3277981 73..225 100 <- Minus
arm_2L 3280308..3280368 9..72 93   Minus

BS15934.pep Sequence

Translation from 16 to 1905

> BS15934.pep
MVDRNSGVQYERMPTVTFSNLQGTASGSTATINFQSGATSARNGSTAFFD
NGAKSFQAKQQKDKNRRTGNDAISSALSATYCKLLVLLGVCLPITEVISD
QIPTYVYQGFYVYLYVGSILFVIFLYISAFRNRSLFNALKDYHEKNSNVH
LKHKVTHFGSFYLRVGAIAFAIGTMVYSGLEFGQFFELNGHPGCRDVFVA
ITPICRMVLCIAQVQFIFLNTTYMDMARHKVTSRFGLMHMVATNLCEWLY
VLVEETKHEIFHISQHEVDPAHDLVIHNSSMSRTDWAAVNESLHQHHHHH
ALNNTLVANVSSVIVNMTITPSPTPAAFSGCSRTTIMGALVQQLSPFLFP
CTIEYSLICAVILFEMWKTVKSIPDIDKTRKNSVKPAAAKPAHHFSVDCS
QSHKGLFFGILIIVMTIISMIMYFVLYTQPGYELVATQEVTLWETFMYFM
CAAAVITGMILMRDLRYIKNTSDEHHSMDLDNLLLIVAQTGVYLYGMFSI
LGSYFAKWDTVPDRVEGIIAEVFGVVQTSLQTMFILHSSHRRCRGTNQVR
RKPGREIITFLLVANIAIWFVNTLIKGRAVFRESHLEFFGVWGWTIITHI
SMPLAIFYRFHSTICLFEVWKITYKAKAH*

BS15934.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3332-PB 629 CG3332-PB 1..629 1..629 3299 100 Plus
CG3332-PC 796 CG3332-PC 171..796 4..629 3203 97.9 Plus
CG3332-PA 797 CG3332-PA 172..797 4..629 3203 97.9 Plus
CG3332-PD 647 CG3332-PD 38..647 20..629 3201 100 Plus
CG42265-PE 1455 CG42265-PE 885..1451 66..627 1168 41.2 Plus