Clone Sequence Records
BS15937.complete Sequence
2231 bp assembled on 2009-12-07
GenBank Submission: KX800618
> BS15937.complete
GAAGTTATCAGTCGACATGTTTACAAAATGCATTAGTTGCTGTGGCCTCG
CAATAATCTCGGTTTTTTTCGCCTGCCTTTTCGTCGAGAATTGCGCGGCC
CTGCAAAAGACGCTGCGCCACTACGAAATTTTTCACAAGGACGATGTGGT
GCACAGGGTGGTGAAAAGGGGTGCCAAGCACAGCACGAATCCCTTCAACA
CCATCAAGGAAGTGGAGTTCACCACGCTGGGCAAGAACTTCCGGCTGATC
CTGCATCCGCACAGGGATGTCCTGCACAGCAAATTCAGGGCCTACGCCGT
GGATGCGGATGGCAACGAAACGGTGGTGCATATGGATCACGATAGCTTCT
ATTCGGGTCGGGTGTTTGGCGAACTGGAGTCCTCTGTGCGTGCCCACATC
GAAGACGGTACCATGACCATGTCCATTCATTTGCCGGAGGAAACCTATCA
CATTGAGCCCTCCTGGCGACACCTGCCGGAGGCCAAGAAGGACACCATGG
TGGCTTACAAGGCCTCGGATGTGAAAGTGCACAAGAATGAGGCGGGTGCC
ACCCCCAAAACCTGTGGCTACATCAAGGAGGGTCTCGAGCTGGAGGACAA
GGAGCACGGTGATACTCTGGACAATGAGCTGCACACGAGGGAGAAGCGTC
AGTCCGATCAGTACGAGTACACGCCCACCAAAACCCGGTGTCCCTTGCTC
TTGGTGGCAGACTATCGATTCTTTCAGGAAATGGGTGGTGGCAACACCAA
GACCACCATTAACTACTTGATAAGCCTCATCGATCGGGTGCACAAGATCT
ACAACGACACTGTGTGGCAGGACCGCTCGGATCAGGAGGGATTCAAGGGC
ATGGGCTTTGTGATCAAGAAGATCGTGGTGCACTCGGAGCCCACGAGACT
GCGAGGAGGCGAGGCACACTACAATATGATCCGTGAGAAGTGGGATGTGC
GCAATCTCCTGGAGGTCTTCTCCCGGGAGTACAGCCACAAAGACTTTTGC
CTTGCCCATCTCTTTACCGATCTCAAGTTCGAAGGCGGCATTTTGGGCCT
GGCCTACGTGGGCTCCCCCCGTCGCAACTCCGTTGGCGGCATTTGCACTC
CAGAATACTTCAAAAATGGTTACACTCTGTACTTGAACTCGGGTCTGAGC
AGCTCCCGCAACCACTATGGTCAGCGGGTCATCACCAGGGAGGCTGACCT
GGTCACGGCCCATGAGTTTGGACACAACTGGGGCTCGGAACACGACCCCG
ACATTCCGGAGTGCTCACCTAGCGCCTCGCAAGGAGGCAGTTTCCTCATG
TACACGTACTCCGTCAGTGGCTACGATGTGAACAATAAGAAATTCTCCCC
CTGCTCCCTGCGTTCGATCCGTAAGGTGCTGCAAGCCAAATCGGGCAGAT
GCTTTTCAGAGCCCGAAGAGTCCTTCTGCGGCAACCTGCGAGTCGAGGGC
GACGAGCAGTGTGATGCTGGTCTTTTGGGCACCGAGGACAACGACTCATG
CTGCGACAAGAACTGCAAGCTGCGCCGGAACCAAGGAGCCATGTGCAGCG
ACAAGAATTCACCGTGCTGCCAGAACTGTCAGTTCATGGCCTCCGGAATG
AAGTGCCGCGAGGCGCAGTACGCCACCTGCGAGCAGGAGGCTCGCTGTAC
CGGCGCCCACGCCGAGTGCCCCAAATCGCCGGCCATGGCGGACGGAACCA
CCTGCCAGGAGCGGGGTCAGTGCCGGAATGGCAAATGCGTGCCGTACTGC
GAGACCCAGGGTCTCCAAAGCTGCATGTGTGATATCATCGCGGATGCCTG
CAAGCGGTGCTGTCGCATGAGCATCAATGAGACTTGCTTCCCCGTAGAGC
CACCTGATGTCCTACCCGATGGCACACCCTGCATCACAGGATTCTGCAAC
AAGGGCGTATGCGAAAAGACCATACAGGATGTGGTGGAGCGCTTCTGGGA
CATCATCGAGGAGATAAATGTGGCCAAGACCTTGAGGTTTCTCAAGGACA
ACATTGTCATGGCCGTTGTCCTCGTCACTGCAGTCTTTTGGATTCCCATC
AGTTGCGTCATATCTTACTTCGACCGCAAGAAGCTGCGCCATGAAATGAA
GCTGATTGAGTGGAGCCAGAAACTGGACCTTATACATCCCAGTGACGAGA
GGCGTCGAGTGATTCACATACGAGTGCCACGCCAGAAGATTTCGGTGGCC
CGAGCCTGTAATTAGAAGCTTTCTAGACCAT
BS15937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tace-RA | 2199 | CG7908-PA | 1..2199 | 17..2215 | 10995 | 100 | Plus |
Tace-RB | 789 | CG7908-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tace-RA | 2408 | CG7908-RA | 54..2252 | 17..2215 | 10995 | 100 | Plus |
Tace-RB | 2322 | CG7908-RB | 1053..2166 | 1102..2215 | 5570 | 100 | Plus |
Tace-RB | 2322 | CG7908-RB | 54..806 | 17..769 | 3765 | 100 | Plus |
Tace-RB | 2322 | CG7908-RB | 859..1054 | 769..964 | 980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30002445..30003011 | 1338..1904 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 30001024..30001458 | 335..769 | 2175 | 100 | Plus |
3R | 32079331 | 3R | 30000726..30000966 | 95..335 | 1205 | 100 | Plus |
3R | 32079331 | 3R | 30002149..30002386 | 1102..1339 | 1190 | 100 | Plus |
3R | 32079331 | 3R | 30001511..30001708 | 769..966 | 990 | 100 | Plus |
3R | 32079331 | 3R | 30003252..30003414 | 2010..2172 | 815 | 100 | Plus |
3R | 32079331 | 3R | 30001823..30001963 | 963..1103 | 705 | 100 | Plus |
3R | 32079331 | 3R | 30003071..30003178 | 1902..2009 | 540 | 100 | Plus |
3R | 32079331 | 3R | 30000583..30000661 | 17..95 | 395 | 100 | Plus |
3R | 32079331 | 3R | 30003479..30003522 | 2172..2215 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:39:10 has no hits.
BS15937.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:44 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 1..2199 | 17..2215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:13 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 36..2228 | 23..2215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:49 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 60..2252 | 23..2215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:47 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 36..2228 | 23..2215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:42 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 60..2252 | 23..2215 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:42 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30001825..30001963 | 965..1103 | 100 | -> | Plus |
3R | 30002151..30002386 | 1104..1339 | 100 | -> | Plus |
3R | 30001025..30001458 | 336..769 | 100 | -> | Plus |
3R | 30001512..30001706 | 770..964 | 100 | -> | Plus |
3R | 30003252..30003414 | 2010..2172 | 100 | -> | Plus |
3R | 30003480..30003522 | 2173..2215 | 100 | | Plus |
3R | 30000589..30000661 | 23..95 | 100 | -> | Plus |
3R | 30000727..30000966 | 96..335 | 100 | -> | Plus |
3R | 30002447..30003010 | 1340..1903 | 100 | -> | Plus |
3R | 30003073..30003178 | 1904..2009 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:49 Download gff for
BS15937.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25826311..25826383 | 23..95 | 100 | -> | Plus |
arm_3R | 25826449..25826688 | 96..335 | 100 | -> | Plus |
arm_3R | 25826747..25827180 | 336..769 | 100 | -> | Plus |
arm_3R | 25827234..25827428 | 770..964 | 100 | -> | Plus |
arm_3R | 25827547..25827685 | 965..1103 | 100 | -> | Plus |
arm_3R | 25827873..25828108 | 1104..1339 | 100 | -> | Plus |
arm_3R | 25828169..25828732 | 1340..1903 | 100 | -> | Plus |
arm_3R | 25828795..25828900 | 1904..2009 | 100 | -> | Plus |
arm_3R | 25828974..25829136 | 2010..2172 | 100 | -> | Plus |
arm_3R | 25829202..25829244 | 2173..2215 | 100 | | Plus |
BS15937.3prime Sequence
766 bp (757 high quality bases) assembled on 2007-04-16
> BS15937.3prime
ATGGTCTAGAAAGCTTCTAATTACAGGCTCGGGCCACCGAAATCTTCTGG
CGTGGCACTCGTATGTGAATCACTCGACGCCTCTCGTCACTGGGATGTAT
AAGGTCCAGTTTCTGGCTCCACTCAATCAGCTTCATTTCATGGCGCAGCT
TCTTGCGGTCGAAGTAAGATATGACGCAACTGATGGGAATCCAAAAGACT
GCAGTGACGAGGACAACGGCCATGACAATGTTGTCCTTGAGAAACCTCAA
GGTCTTGGCCACATTTATCTCCTCGATGATGTCCCAGAAGCGCTCCACCA
CATCCTGTATGGTCTTTTCGCATACGCCCTTGTTGCAGAATCCTGTGATG
CAGGGTGTGCCATCGGGTAGGACATCAGGTGGCTCTACGGGGAAGCAAGT
CTCATTGATGCTCATGCGACAGCACCGCTTGCAGGCATCCGCGATGATAT
CACACATGCAGCTTTGGAGACCCTGGGTCTCGCAGTACGGCACGCATTTG
CCATTCCGGCACTGACCCCGCTCCTGGCAGGTGGTTCCGTCCGCCATGGC
CGGCGATTTGGGGCACTCGGCGTGGGCGCCGGTACAGCGAGCCTCCTGCT
CGCAGGTGGCGTACTGCGCCTCGCGGCACTTCATTCCGGAGGCCATGAAC
TGACAGTTCTGGCAGCACGGTGAATTCTTGTCGCTGCACATGGCTCCTTG
GTTCCGGCGCAGCTTGCAGTTCTTGTCGCAGCATGAGTCGTTGTCCTCGG
TGCCCAAAAGACCAGC
BS15937.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7908-PB | 918 | Tace-RB | 169..918 | 766..17 | 3750 | 100 | Minus |
CG7908-PA | 2199 | Tace-RA | 1450..2199 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tace-RA | 2408 | CG7908-RA | 1503..2252 | 766..17 | 3750 | 100 | Minus |
Tace-RB | 2322 | CG7908-RB | 1417..2166 | 766..17 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30002573..30003011 | 766..328 | 2195 | 100 | Minus |
3R | 32079331 | 3R | 30003252..30003414 | 222..60 | 815 | 100 | Minus |
3R | 32079331 | 3R | 30003071..30003178 | 330..223 | 540 | 100 | Minus |
3R | 32079331 | 3R | 30003479..30003522 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:06 has no hits.
BS15937.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:28 Download gff for
BS15937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7908-PA | 1450..2199 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:44 Download gff for
BS15937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RB | 1417..2166 | 17..766 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:37 Download gff for
BS15937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RB | 1417..2166 | 17..766 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:37 Download gff for
BS15937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30003480..30003522 | 17..59 | 100 | | Minus |
3R | 30002573..30003010 | 329..766 | 100 | -> | Minus |
3R | 30003073..30003178 | 223..328 | 100 | -> | Minus |
3R | 30003252..30003414 | 60..222 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:44 Download gff for
BS15937.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25828295..25828732 | 329..766 | 100 | -> | Minus |
arm_3R | 25828795..25828900 | 223..328 | 100 | -> | Minus |
arm_3R | 25828974..25829136 | 60..222 | 100 | -> | Minus |
arm_3R | 25829202..25829244 | 17..59 | 100 | | Minus |
BS15937.5prime Sequence
800 bp (725 high quality bases) assembled on 2007-04-16
> BS15937.5prime
GAAGTTATCAGTCGACATGTTTACAAAATGCATTAGTTGCTGTGGCCTCG
CAATAATCTCGGTTTTTTTCGCCTGCCTTTTCGTCGAGAATTGCGCGGCC
CTGCAAAAGACGCTGCGCCACTACGAAATTTTTCACAAGGACGATGTGGT
GCACAGGGTGGTGAAAAGGGGTGCCAAGCACAGCACGAATCCCTTCAACA
CCATCAAGGAAGTGGAGTTCACCACGCTGGGCAAGAACTTCCGGCTGATC
CTGCATCCGCACAGGGATGTCCTGCACAGCAAATTCAGGGCCTACGCCGT
GGATGCGGATGGCAACGAAACGGTGGTGCATATGGATCACGATAGCTTCT
ATTCGGGTCGGGTGTTTGGCGAACTGGAGTCCTCTGTGCGTGCCCACATC
GAAGACGGTACCATGACCATGTCCATTCATTTGCCGGAGGAAACCTATCA
CATTGAGCCCTCCTGGCGACACCTGCCGGAGGCCAAGAAGGACACCATGG
TGGCTTACAAGGCCTCGGATGTGAAAGTGCACAAGAATGAGGCGGGTGCC
ACCCCCAAAACCTGTGGCTACATCAAGGAGGGTCTCGAGCTGGAGGACAA
GGAGCACGGTGATACTCTGGACAATGAGCTGCACACGAGGGAGAAGCGTC
AGTCCGATCAGTACGAGTACACGCCCACCAAAACCCGGTGTCCCTTGCTC
TTGGTGGCAGACTATCGATTCTTTCAGGAAATGGGTGGTGGCAACACCAA
GACCACCATTAACTACTTGATAAGCCTCATCGATCGGGTGCACAAGATCT
BS15937.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7908-PA | 2199 | Tace-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tace-RA | 2408 | CG7908-RA | 54..837 | 17..800 | 3920 | 100 | Plus |
Tace-RB | 2322 | CG7908-RB | 54..806 | 17..769 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30001024..30001458 | 335..769 | 2175 | 100 | Plus |
3R | 32079331 | 3R | 30000726..30000966 | 95..335 | 1205 | 100 | Plus |
3R | 32079331 | 3R | 30000583..30000661 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:14:01 has no hits.
BS15937.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:29 Download gff for
BS15937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7908-PA | 1..784 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:33 Download gff for
BS15937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 54..837 | 17..800 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:10 Download gff for
BS15937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tace-RA | 54..837 | 17..800 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:10 Download gff for
BS15937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30000583..30000661 | 17..95 | 100 | -> | Plus |
3R | 30000727..30000966 | 96..335 | 100 | -> | Plus |
3R | 30001025..30001458 | 336..769 | 100 | -> | Plus |
3R | 30001512..30001542 | 770..800 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:33 Download gff for
BS15937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25826305..25826383 | 17..95 | 100 | -> | Plus |
arm_3R | 25826449..25826688 | 96..335 | 100 | -> | Plus |
arm_3R | 25826747..25827180 | 336..769 | 100 | -> | Plus |
arm_3R | 25827234..25827264 | 770..800 | 100 | | Plus |
BS15937.pep Sequence
Translation from 16 to 2214
> BS15937.pep
MFTKCISCCGLAIISVFFACLFVENCAALQKTLRHYEIFHKDDVVHRVVK
RGAKHSTNPFNTIKEVEFTTLGKNFRLILHPHRDVLHSKFRAYAVDADGN
ETVVHMDHDSFYSGRVFGELESSVRAHIEDGTMTMSIHLPEETYHIEPSW
RHLPEAKKDTMVAYKASDVKVHKNEAGATPKTCGYIKEGLELEDKEHGDT
LDNELHTREKRQSDQYEYTPTKTRCPLLLVADYRFFQEMGGGNTKTTINY
LISLIDRVHKIYNDTVWQDRSDQEGFKGMGFVIKKIVVHSEPTRLRGGEA
HYNMIREKWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGS
PRRNSVGGICTPEYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHE
FGHNWGSEHDPDIPECSPSASQGGSFLMYTYSVSGYDVNNKKFSPCSLRS
IRKVLQAKSGRCFSEPEESFCGNLRVEGDEQCDAGLLGTEDNDSCCDKNC
KLRRNQGAMCSDKNSPCCQNCQFMASGMKCREAQYATCEQEARCTGAHAE
CPKSPAMADGTTCQERGQCRNGKCVPYCETQGLQSCMCDIIADACKRCCR
MSINETCFPVEPPDVLPDGTPCITGFCNKGVCEKTIQDVVERFWDIIEEI
NVAKTLRFLKDNIVMAVVLVTAVFWIPISCVISYFDRKKLRHEMKLIEWS
QKLDLIHPSDERRRVIHIRVPRQKISVARACN*
BS15937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tace-PA | 732 | CG7908-PA | 1..732 | 1..732 | 3985 | 100 | Plus |
Tace-PB | 262 | CG7908-PB | 1..261 | 1..261 | 1360 | 96.9 | Plus |
Kul-PC | 985 | CG1964-PC | 478..894 | 222..628 | 528 | 34.4 | Plus |
Kul-PB | 1537 | CG1964-PB | 478..894 | 222..628 | 528 | 34.4 | Plus |
Kul-PA | 1537 | CG1964-PA | 478..894 | 222..628 | 528 | 34.4 | Plus |