Clone BS15937 Report

Search the DGRC for BS15937

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptTace-RA
Protein status:BS15937.pep: full length peptide match
Sequenced Size:2231

Clone Sequence Records

BS15937.complete Sequence

2231 bp assembled on 2009-12-07

GenBank Submission: KX800618

> BS15937.complete
GAAGTTATCAGTCGACATGTTTACAAAATGCATTAGTTGCTGTGGCCTCG
CAATAATCTCGGTTTTTTTCGCCTGCCTTTTCGTCGAGAATTGCGCGGCC
CTGCAAAAGACGCTGCGCCACTACGAAATTTTTCACAAGGACGATGTGGT
GCACAGGGTGGTGAAAAGGGGTGCCAAGCACAGCACGAATCCCTTCAACA
CCATCAAGGAAGTGGAGTTCACCACGCTGGGCAAGAACTTCCGGCTGATC
CTGCATCCGCACAGGGATGTCCTGCACAGCAAATTCAGGGCCTACGCCGT
GGATGCGGATGGCAACGAAACGGTGGTGCATATGGATCACGATAGCTTCT
ATTCGGGTCGGGTGTTTGGCGAACTGGAGTCCTCTGTGCGTGCCCACATC
GAAGACGGTACCATGACCATGTCCATTCATTTGCCGGAGGAAACCTATCA
CATTGAGCCCTCCTGGCGACACCTGCCGGAGGCCAAGAAGGACACCATGG
TGGCTTACAAGGCCTCGGATGTGAAAGTGCACAAGAATGAGGCGGGTGCC
ACCCCCAAAACCTGTGGCTACATCAAGGAGGGTCTCGAGCTGGAGGACAA
GGAGCACGGTGATACTCTGGACAATGAGCTGCACACGAGGGAGAAGCGTC
AGTCCGATCAGTACGAGTACACGCCCACCAAAACCCGGTGTCCCTTGCTC
TTGGTGGCAGACTATCGATTCTTTCAGGAAATGGGTGGTGGCAACACCAA
GACCACCATTAACTACTTGATAAGCCTCATCGATCGGGTGCACAAGATCT
ACAACGACACTGTGTGGCAGGACCGCTCGGATCAGGAGGGATTCAAGGGC
ATGGGCTTTGTGATCAAGAAGATCGTGGTGCACTCGGAGCCCACGAGACT
GCGAGGAGGCGAGGCACACTACAATATGATCCGTGAGAAGTGGGATGTGC
GCAATCTCCTGGAGGTCTTCTCCCGGGAGTACAGCCACAAAGACTTTTGC
CTTGCCCATCTCTTTACCGATCTCAAGTTCGAAGGCGGCATTTTGGGCCT
GGCCTACGTGGGCTCCCCCCGTCGCAACTCCGTTGGCGGCATTTGCACTC
CAGAATACTTCAAAAATGGTTACACTCTGTACTTGAACTCGGGTCTGAGC
AGCTCCCGCAACCACTATGGTCAGCGGGTCATCACCAGGGAGGCTGACCT
GGTCACGGCCCATGAGTTTGGACACAACTGGGGCTCGGAACACGACCCCG
ACATTCCGGAGTGCTCACCTAGCGCCTCGCAAGGAGGCAGTTTCCTCATG
TACACGTACTCCGTCAGTGGCTACGATGTGAACAATAAGAAATTCTCCCC
CTGCTCCCTGCGTTCGATCCGTAAGGTGCTGCAAGCCAAATCGGGCAGAT
GCTTTTCAGAGCCCGAAGAGTCCTTCTGCGGCAACCTGCGAGTCGAGGGC
GACGAGCAGTGTGATGCTGGTCTTTTGGGCACCGAGGACAACGACTCATG
CTGCGACAAGAACTGCAAGCTGCGCCGGAACCAAGGAGCCATGTGCAGCG
ACAAGAATTCACCGTGCTGCCAGAACTGTCAGTTCATGGCCTCCGGAATG
AAGTGCCGCGAGGCGCAGTACGCCACCTGCGAGCAGGAGGCTCGCTGTAC
CGGCGCCCACGCCGAGTGCCCCAAATCGCCGGCCATGGCGGACGGAACCA
CCTGCCAGGAGCGGGGTCAGTGCCGGAATGGCAAATGCGTGCCGTACTGC
GAGACCCAGGGTCTCCAAAGCTGCATGTGTGATATCATCGCGGATGCCTG
CAAGCGGTGCTGTCGCATGAGCATCAATGAGACTTGCTTCCCCGTAGAGC
CACCTGATGTCCTACCCGATGGCACACCCTGCATCACAGGATTCTGCAAC
AAGGGCGTATGCGAAAAGACCATACAGGATGTGGTGGAGCGCTTCTGGGA
CATCATCGAGGAGATAAATGTGGCCAAGACCTTGAGGTTTCTCAAGGACA
ACATTGTCATGGCCGTTGTCCTCGTCACTGCAGTCTTTTGGATTCCCATC
AGTTGCGTCATATCTTACTTCGACCGCAAGAAGCTGCGCCATGAAATGAA
GCTGATTGAGTGGAGCCAGAAACTGGACCTTATACATCCCAGTGACGAGA
GGCGTCGAGTGATTCACATACGAGTGCCACGCCAGAAGATTTCGGTGGCC
CGAGCCTGTAATTAGAAGCTTTCTAGACCAT

BS15937.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:39:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tace-RA 2199 CG7908-PA 1..2199 17..2215 10995 100 Plus
Tace-RB 789 CG7908-PB 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:12
Subject Length Description Subject Range Query Range Score Percent Strand
Tace-RA 2408 CG7908-RA 54..2252 17..2215 10995 100 Plus
Tace-RB 2322 CG7908-RB 1053..2166 1102..2215 5570 100 Plus
Tace-RB 2322 CG7908-RB 54..806 17..769 3765 100 Plus
Tace-RB 2322 CG7908-RB 859..1054 769..964 980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30002445..30003011 1338..1904 2835 100 Plus
3R 32079331 3R 30001024..30001458 335..769 2175 100 Plus
3R 32079331 3R 30000726..30000966 95..335 1205 100 Plus
3R 32079331 3R 30002149..30002386 1102..1339 1190 100 Plus
3R 32079331 3R 30001511..30001708 769..966 990 100 Plus
3R 32079331 3R 30003252..30003414 2010..2172 815 100 Plus
3R 32079331 3R 30001823..30001963 963..1103 705 100 Plus
3R 32079331 3R 30003071..30003178 1902..2009 540 100 Plus
3R 32079331 3R 30000583..30000661 17..95 395 100 Plus
3R 32079331 3R 30003479..30003522 2172..2215 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:39:10 has no hits.

BS15937.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:44 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 1..2199 17..2215 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:13 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 36..2228 23..2215 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:49 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 60..2252 23..2215 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:47 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 36..2228 23..2215 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:42 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 60..2252 23..2215 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:42 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30001825..30001963 965..1103 100 -> Plus
3R 30002151..30002386 1104..1339 100 -> Plus
3R 30001025..30001458 336..769 100 -> Plus
3R 30001512..30001706 770..964 100 -> Plus
3R 30003252..30003414 2010..2172 100 -> Plus
3R 30003480..30003522 2173..2215 100   Plus
3R 30000589..30000661 23..95 100 -> Plus
3R 30000727..30000966 96..335 100 -> Plus
3R 30002447..30003010 1340..1903 100 -> Plus
3R 30003073..30003178 1904..2009 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:49 Download gff for BS15937.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25826311..25826383 23..95 100 -> Plus
arm_3R 25826449..25826688 96..335 100 -> Plus
arm_3R 25826747..25827180 336..769 100 -> Plus
arm_3R 25827234..25827428 770..964 100 -> Plus
arm_3R 25827547..25827685 965..1103 100 -> Plus
arm_3R 25827873..25828108 1104..1339 100 -> Plus
arm_3R 25828169..25828732 1340..1903 100 -> Plus
arm_3R 25828795..25828900 1904..2009 100 -> Plus
arm_3R 25828974..25829136 2010..2172 100 -> Plus
arm_3R 25829202..25829244 2173..2215 100   Plus

BS15937.3prime Sequence

766 bp (757 high quality bases) assembled on 2007-04-16

> BS15937.3prime
ATGGTCTAGAAAGCTTCTAATTACAGGCTCGGGCCACCGAAATCTTCTGG
CGTGGCACTCGTATGTGAATCACTCGACGCCTCTCGTCACTGGGATGTAT
AAGGTCCAGTTTCTGGCTCCACTCAATCAGCTTCATTTCATGGCGCAGCT
TCTTGCGGTCGAAGTAAGATATGACGCAACTGATGGGAATCCAAAAGACT
GCAGTGACGAGGACAACGGCCATGACAATGTTGTCCTTGAGAAACCTCAA
GGTCTTGGCCACATTTATCTCCTCGATGATGTCCCAGAAGCGCTCCACCA
CATCCTGTATGGTCTTTTCGCATACGCCCTTGTTGCAGAATCCTGTGATG
CAGGGTGTGCCATCGGGTAGGACATCAGGTGGCTCTACGGGGAAGCAAGT
CTCATTGATGCTCATGCGACAGCACCGCTTGCAGGCATCCGCGATGATAT
CACACATGCAGCTTTGGAGACCCTGGGTCTCGCAGTACGGCACGCATTTG
CCATTCCGGCACTGACCCCGCTCCTGGCAGGTGGTTCCGTCCGCCATGGC
CGGCGATTTGGGGCACTCGGCGTGGGCGCCGGTACAGCGAGCCTCCTGCT
CGCAGGTGGCGTACTGCGCCTCGCGGCACTTCATTCCGGAGGCCATGAAC
TGACAGTTCTGGCAGCACGGTGAATTCTTGTCGCTGCACATGGCTCCTTG
GTTCCGGCGCAGCTTGCAGTTCTTGTCGCAGCATGAGTCGTTGTCCTCGG
TGCCCAAAAGACCAGC

BS15937.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7908-PB 918 Tace-RB 169..918 766..17 3750 100 Minus
CG7908-PA 2199 Tace-RA 1450..2199 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
Tace-RA 2408 CG7908-RA 1503..2252 766..17 3750 100 Minus
Tace-RB 2322 CG7908-RB 1417..2166 766..17 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30002573..30003011 766..328 2195 100 Minus
3R 32079331 3R 30003252..30003414 222..60 815 100 Minus
3R 32079331 3R 30003071..30003178 330..223 540 100 Minus
3R 32079331 3R 30003479..30003522 60..17 220 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:13:06 has no hits.

BS15937.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:28 Download gff for BS15937.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7908-PA 1450..2199 17..766 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:44 Download gff for BS15937.3prime
Subject Subject Range Query Range Percent Splice Strand
Tace-RB 1417..2166 17..766 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:37 Download gff for BS15937.3prime
Subject Subject Range Query Range Percent Splice Strand
Tace-RB 1417..2166 17..766 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:37 Download gff for BS15937.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30003480..30003522 17..59 100   Minus
3R 30002573..30003010 329..766 100 -> Minus
3R 30003073..30003178 223..328 100 -> Minus
3R 30003252..30003414 60..222 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:44 Download gff for BS15937.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25828295..25828732 329..766 100 -> Minus
arm_3R 25828795..25828900 223..328 100 -> Minus
arm_3R 25828974..25829136 60..222 100 -> Minus
arm_3R 25829202..25829244 17..59 100   Minus

BS15937.5prime Sequence

800 bp (725 high quality bases) assembled on 2007-04-16

> BS15937.5prime
GAAGTTATCAGTCGACATGTTTACAAAATGCATTAGTTGCTGTGGCCTCG
CAATAATCTCGGTTTTTTTCGCCTGCCTTTTCGTCGAGAATTGCGCGGCC
CTGCAAAAGACGCTGCGCCACTACGAAATTTTTCACAAGGACGATGTGGT
GCACAGGGTGGTGAAAAGGGGTGCCAAGCACAGCACGAATCCCTTCAACA
CCATCAAGGAAGTGGAGTTCACCACGCTGGGCAAGAACTTCCGGCTGATC
CTGCATCCGCACAGGGATGTCCTGCACAGCAAATTCAGGGCCTACGCCGT
GGATGCGGATGGCAACGAAACGGTGGTGCATATGGATCACGATAGCTTCT
ATTCGGGTCGGGTGTTTGGCGAACTGGAGTCCTCTGTGCGTGCCCACATC
GAAGACGGTACCATGACCATGTCCATTCATTTGCCGGAGGAAACCTATCA
CATTGAGCCCTCCTGGCGACACCTGCCGGAGGCCAAGAAGGACACCATGG
TGGCTTACAAGGCCTCGGATGTGAAAGTGCACAAGAATGAGGCGGGTGCC
ACCCCCAAAACCTGTGGCTACATCAAGGAGGGTCTCGAGCTGGAGGACAA
GGAGCACGGTGATACTCTGGACAATGAGCTGCACACGAGGGAGAAGCGTC
AGTCCGATCAGTACGAGTACACGCCCACCAAAACCCGGTGTCCCTTGCTC
TTGGTGGCAGACTATCGATTCTTTCAGGAAATGGGTGGTGGCAACACCAA
GACCACCATTAACTACTTGATAAGCCTCATCGATCGGGTGCACAAGATCT

BS15937.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7908-PA 2199 Tace-RA 1..784 17..800 3920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
Tace-RA 2408 CG7908-RA 54..837 17..800 3920 100 Plus
Tace-RB 2322 CG7908-RB 54..806 17..769 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30001024..30001458 335..769 2175 100 Plus
3R 32079331 3R 30000726..30000966 95..335 1205 100 Plus
3R 32079331 3R 30000583..30000661 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:14:01 has no hits.

BS15937.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:29 Download gff for BS15937.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7908-PA 1..784 17..800 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:11:33 Download gff for BS15937.5prime
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 54..837 17..800 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:10 Download gff for BS15937.5prime
Subject Subject Range Query Range Percent Splice Strand
Tace-RA 54..837 17..800 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:31:10 Download gff for BS15937.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30000583..30000661 17..95 100 -> Plus
3R 30000727..30000966 96..335 100 -> Plus
3R 30001025..30001458 336..769 100 -> Plus
3R 30001512..30001542 770..800 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:11:33 Download gff for BS15937.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25826305..25826383 17..95 100 -> Plus
arm_3R 25826449..25826688 96..335 100 -> Plus
arm_3R 25826747..25827180 336..769 100 -> Plus
arm_3R 25827234..25827264 770..800 100   Plus

BS15937.pep Sequence

Translation from 16 to 2214

> BS15937.pep
MFTKCISCCGLAIISVFFACLFVENCAALQKTLRHYEIFHKDDVVHRVVK
RGAKHSTNPFNTIKEVEFTTLGKNFRLILHPHRDVLHSKFRAYAVDADGN
ETVVHMDHDSFYSGRVFGELESSVRAHIEDGTMTMSIHLPEETYHIEPSW
RHLPEAKKDTMVAYKASDVKVHKNEAGATPKTCGYIKEGLELEDKEHGDT
LDNELHTREKRQSDQYEYTPTKTRCPLLLVADYRFFQEMGGGNTKTTINY
LISLIDRVHKIYNDTVWQDRSDQEGFKGMGFVIKKIVVHSEPTRLRGGEA
HYNMIREKWDVRNLLEVFSREYSHKDFCLAHLFTDLKFEGGILGLAYVGS
PRRNSVGGICTPEYFKNGYTLYLNSGLSSSRNHYGQRVITREADLVTAHE
FGHNWGSEHDPDIPECSPSASQGGSFLMYTYSVSGYDVNNKKFSPCSLRS
IRKVLQAKSGRCFSEPEESFCGNLRVEGDEQCDAGLLGTEDNDSCCDKNC
KLRRNQGAMCSDKNSPCCQNCQFMASGMKCREAQYATCEQEARCTGAHAE
CPKSPAMADGTTCQERGQCRNGKCVPYCETQGLQSCMCDIIADACKRCCR
MSINETCFPVEPPDVLPDGTPCITGFCNKGVCEKTIQDVVERFWDIIEEI
NVAKTLRFLKDNIVMAVVLVTAVFWIPISCVISYFDRKKLRHEMKLIEWS
QKLDLIHPSDERRRVIHIRVPRQKISVARACN*

BS15937.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tace-PA 732 CG7908-PA 1..732 1..732 3985 100 Plus
Tace-PB 262 CG7908-PB 1..261 1..261 1360 96.9 Plus
Kul-PC 985 CG1964-PC 478..894 222..628 528 34.4 Plus
Kul-PB 1537 CG1964-PB 478..894 222..628 528 34.4 Plus
Kul-PA 1537 CG1964-PA 478..894 222..628 528 34.4 Plus