Clone Sequence Records
BS15938.complete Sequence
1937 bp assembled on 2009-12-07
GenBank Submission: KX806081
> BS15938.complete
GAAGTTATCAGTCGACATGCACACGCAGTTGGCAGACGAGTCGTACCGCG
TGGGGGAAGCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTG
GACATAGCCAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTT
CCTCTCCGAGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCA
TCTTCATGGGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGC
ACCAGCAAGGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATA
CCATGGCGATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAA
TTGGCTTTCCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGC
ATGAGAATCGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGC
TCGCACCGAGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGC
GGTACGTCCGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAG
TATGGTGATGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACG
TCATCAAAAGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATT
TGCGTCGTGAGCTGGGCGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGGC
TACGTAGGAGCTGGCACCGTGGAGTTCATTCTAGACAAAGAAGATCTCTC
TTTCCACTTCATGGAAATGAATACCCGCCTGCAGGTGGAGCATCCTATAA
CGGAAATGATTACGGGCACCGATTTGGTTGAATGGCAGATTCGCATTGCC
GCCGGTGAGCCATTACCCCTGAAGCAATCTGAGATTACGCGGCGTGGCCA
CGCATTTGAAGCTCGCATTTATGCAGAAAATCCTCGCGGAGGCTTTCTGC
CCGGAGCCGGACCCCTGCGATATTTGTCTACTCCCCAACCATCAAACAAC
GTTCGCGTGGAGACGGGTGTCCGAGAAGGAGATGAGGTGTCTGTGCACTA
CGACCCCATGATTGCCAAGCTAGTCGTTTGGGGCGAAAACCGCACACAAG
CGCTTAACTCATTGGTTGCCCGCCTGGGTGAATATCATATATCTGGTCTG
GACACTAACATTAATTTCCTCATCGACCTTGCGTCGCATCCTGAGTTTCA
GCTGGCCAATGTGCACACTGGCTTTATCGATGAGCAGTTCGATACTCTAT
TTCCGCCAATTATCATCAGTCCGCAGCAAGTCAGCCAAGCTGCTTTGGCG
CTAGTCTTAAACGAGTTGCAGGCAGCCTTTAGGAACGGAAACAAAGATCA
GGATCCATTTGTTGCCACCCCTAACGCTCGTCTGAATTACTCTTTGGTTC
GCAGATATGACTTGAAAGCCAATGAGAAGGTCTATTCTGTGGCTGTCAAG
TTTGATGGCGAGGATATGCAAATTCAGGTGGATAATGGCGACTGGCAGGA
TGCAAAGGTCGAAAGAGTTCAGGATGGAAGTCGTCTAAAAATTCGTGCCA
ATATCAATAGCAACGTCACCACATATAATGCTAGTATTGATGGCACTAGT
GTCTCTTTGTTTTCGGAAAGTGGCAAGGTCGATTTTGAGGTGGGACAGCC
GAAATTCTTAAGTGCCCAGGGCGATCAATTGGGTGCAGTTGGGTCTCGCA
TAGTGGCTCCCATGCCCGGGATTTTAGAGAAGGTGCTGGTAAAGCCCGGT
GACAAGGTCAAGAAGGGCGAAAACTTGGCAGTGCTTATTGCCATGAAAAT
GGAACACATTCTAAAAGCTCCAAAGGACGCCACCATTAAGTCTATTGGAG
GAGCCGCGGGCGATAACGTTGCTAAGGGAGCGGCCGTGATTACATTCGTC
GACGAGGAAGTAGAAAAGTAAAAGCTTTCTAGACCAT
BS15938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2097 | CG2118-PC | 192..2097 | 16..1921 | 9530 | 100 | Plus |
| CG2118-RA | 2097 | CG2118-PA | 192..2097 | 16..1921 | 9530 | 100 | Plus |
| CG2118-RD | 1905 | CG2118-PD | 1..1905 | 17..1921 | 9525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 81..1986 | 16..1921 | 9530 | 100 | Plus |
| CG2118-RC | 2920 | CG2118-RC | 481..2386 | 16..1921 | 9530 | 100 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 212..2117 | 16..1921 | 9530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793320 | 631..16 | 3080 | 100 | Minus |
| 3R | 32079331 | 3R | 31792144..31792650 | 1138..632 | 2535 | 100 | Minus |
| 3R | 32079331 | 3R | 31791793..31792084 | 1430..1139 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 31791550..31791738 | 1618..1430 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31791314..31791485 | 1790..1619 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 31791126..31791257 | 1921..1790 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:37:11 has no hits.
BS15938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:45 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 185..2097 | 10..1921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:55 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 212..2108 | 17..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:54 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 213..2109 | 17..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:30:07 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 212..2108 | 17..1913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:53 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 213..2109 | 17..1913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:53 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791134..31791256 | 1791..1913 | 100 | <- | Minus |
| 3R | 31791314..31791485 | 1619..1790 | 100 | <- | Minus |
| 3R | 31791550..31791737 | 1431..1618 | 100 | <- | Minus |
| 3R | 31791793..31792084 | 1139..1430 | 100 | <- | Minus |
| 3R | 31792144..31792650 | 632..1138 | 100 | <- | Minus |
| 3R | 31792705..31793319 | 17..631 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:54 Download gff for
BS15938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27616856..27616978 | 1791..1913 | 100 | <- | Minus |
| arm_3R | 27617036..27617207 | 1619..1790 | 100 | <- | Minus |
| arm_3R | 27617272..27617459 | 1431..1618 | 100 | <- | Minus |
| arm_3R | 27617515..27617806 | 1139..1430 | 100 | <- | Minus |
| arm_3R | 27617866..27618372 | 632..1138 | 100 | <- | Minus |
| arm_3R | 27618427..27619041 | 17..631 | 100 | | Minus |
BS15938.3prime Sequence
892 bp (737 high quality bases) assembled on 2007-04-16
> BS15938.3prime
ATGGTCTAGAAAGCTTTTACTTTTCTACTTCCTCGTCGACGAATGTAATC
ACGGCCGCTCCCTTAGCAACGTTATCGCCCGCGGCTCCTCCAATAGACTT
AATGGTGGCGTCCTTTGGAGCTTTTAGAATGTGTTCCATTTTCATGGCAA
TAAGCACTGCCAAGTTTTCGCCCTTCTTGACCTTGTCACCGGGCTTTACC
AGCACCTTCTCTAAAATCCCGGGCATGGGAGCCACTATGCGAGACCCAAC
TGCACCCAATTGATCGCCCTGGGCACTTAAGAATTTCGGCTGTCCCACCT
CAAAATCGACCTTGCCACTTTCCGAAAACAAAGAGACACTAGTGCCATCA
ATACTAGCATTATATGTGGTGACGTTGCTATTGATATTGGCACGAATTTT
TAGACGACTTCCATCCTGAACTCTTTCGACCTTTGCATCCTGCCAGTCGC
CATTATCCACCTGAATTTGCATATCCTCGCCATCAAACTTGACAGCCACA
GAATAGACCTTCTCATTGGCTTTCAAGTCATATCTGCGAACCAAAGAGTA
ATTCAGACGAGCGTTAGGGGTGGCAACAAATGGATCCTGATCTTTGTTTC
CGTTCCTAAAGGCTGCCTGCAACTCGTTTAAGACTAGCGCCAAAGCAGCT
TGGCTGACTTGCTGCGGACTGATGATAATTGGCGGAAATAGAGTATCGAA
CTGCTCATCGATAAAGCCAGTGTGCACATTGGCCAGCTGAAACTCAGGAT
GCGACGCAAGGTCGATGAGGAAATTAATGTTAGTGTCCAGACCAGATATA
TGATATTCACCCAGGCGGGCAACCAATGAGTTAAGCGCTTGTGTGCGGTT
TTCGCCCCCAACGACTAGCTGGGCAATCATGGGGTCGTAGTG
BS15938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PA | 2097 | CG2118-RA | 1222..2097 | 892..17 | 4330 | 99.7 | Minus |
| CG2118-PB | 1905 | CG2118-RB | 1030..1905 | 892..17 | 4330 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 1111..1986 | 892..17 | 4350 | 99.8 | Minus |
| CG2118-RC | 2920 | CG2118-RC | 1511..2386 | 892..17 | 4350 | 99.8 | Minus |
| CG2118-RB | 2297 | CG2118-RB | 1242..2117 | 892..17 | 4350 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31791793..31792084 | 508..799 | 1460 | 100 | Plus |
| 3R | 32079331 | 3R | 31791550..31791738 | 320..508 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 31791314..31791485 | 148..319 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 31791126..31791257 | 17..148 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 31792144..31792236 | 800..892 | 435 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:38:45 has no hits.
BS15938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:29 Download gff for
BS15938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-PB | 1030..1905 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:13:14 Download gff for
BS15938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 1242..2117 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:17:02 Download gff for
BS15938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 1242..2117 | 17..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:17:02 Download gff for
BS15938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791550..31791737 | 320..507 | 100 | <- | Plus |
| 3R | 31791126..31791256 | 17..147 | 100 | <- | Plus |
| 3R | 31791314..31791485 | 148..319 | 100 | <- | Plus |
| 3R | 31791793..31792084 | 508..799 | 100 | <- | Plus |
| 3R | 31792144..31792236 | 800..892 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:13:14 Download gff for
BS15938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27616848..27616978 | 17..147 | 100 | <- | Plus |
| arm_3R | 27617036..27617207 | 148..319 | 100 | <- | Plus |
| arm_3R | 27617272..27617459 | 320..507 | 100 | <- | Plus |
| arm_3R | 27617515..27617806 | 508..799 | 100 | <- | Plus |
| arm_3R | 27617866..27617958 | 800..892 | 97 | | Plus |
BS15938.5prime Sequence
933 bp (880 high quality bases) assembled on 2007-04-16
> BS15938.5prime
GAAGTTATCAGTCGACATGCACACGCAGTTGGCAGACGAGTCGTACCGCG
TGGGGGAAGCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTG
GACATAGCCAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTT
CCTCTCCGAGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCA
TCTTCATGGGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGC
ACCAGCAAGGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATA
CCATGGCGATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAA
TTGGCTTTCCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGC
ATGAGAATCGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGC
TCGCACCGAGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGC
GGTACGTCCGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAG
TATGGTGATGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACG
TCATCAAAAGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATT
TGCGTCGTGAGCTGGGCGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGGC
TACGTAGGAGCTGGCACCGTGGAGTTCATTCTAGACAAAGAAGATCTCTC
TTTCCACTTCATGGAAATGAATACCCGCCTGCAGGTGGAGCATCCTATAA
CGGAAATGATTACGGGCACCGATTTGGTTGAATGGCAGATTCGCATTGCC
GCCGGTGAGCCATTACCCCTGAAGCAATCTGAGATTACGCGGCGTGGCCA
CGCATTTGAAGCTCGCATTTATGCAGAAAATCC
BS15938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PA | 2097 | CG2118-RA | 192..1109 | 16..933 | 4590 | 100 | Plus |
| CG2118-PB | 1905 | CG2118-RB | 1..917 | 17..933 | 4585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 81..998 | 16..933 | 4590 | 100 | Plus |
| CG2118-RC | 2920 | CG2118-RC | 481..1398 | 16..933 | 4590 | 100 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 212..1129 | 16..933 | 4590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793320 | 631..16 | 3080 | 100 | Minus |
| 3R | 32079331 | 3R | 31792349..31792650 | 933..632 | 1510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:01:41 has no hits.
BS15938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:29 Download gff for
BS15938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-PA | 185..1109 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:45 Download gff for
BS15938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 205..1129 | 10..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:17 Download gff for
BS15938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 205..1129 | 10..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:17 Download gff for
BS15938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31792349..31792650 | 632..933 | 100 | <- | Minus |
| 3R | 31792705..31793324 | 10..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:45 Download gff for
BS15938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27618071..27618372 | 632..933 | 100 | <- | Minus |
| arm_3R | 27618427..27619046 | 10..631 | 99 | | Minus |
BS15938.pep Sequence
Translation from 16 to 1920
> BS15938.pep
MHTQLADESYRVGEAASSASYLRGERILDIAKRSGAQAIHPGYGFLSESV
EFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHGDDQ
SDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESE
KSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWERDCSVQRRHQKII
EEAPAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFME
MNTRLQVEHPITEMITGTDLVEWQIRIAAGEPLPLKQSEITRRGHAFEAR
IYAENPRGGFLPGAGPLRYLSTPQPSNNVRVETGVREGDEVSVHYDPMIA
KLVVWGENRTQALNSLVARLGEYHISGLDTNINFLIDLASHPEFQLANVH
TGFIDEQFDTLFPPIIISPQQVSQAALALVLNELQAAFRNGNKDQDPFVA
TPNARLNYSLVRRYDLKANEKVYSVAVKFDGEDMQIQVDNGDWQDAKVER
VQDGSRLKIRANINSNVTTYNASIDGTSVSLFSESGKVDFEVGQPKFLSA
QGDQLGAVGSRIVAPMPGILEKVLVKPGDKVKKGENLAVLIAMKMEHILK
APKDATIKSIGGAAGDNVAKGAAVITFVDEEVEK*
BS15938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PD | 634 | CG2118-PD | 1..634 | 1..634 | 3231 | 100 | Plus |
| CG2118-PC | 698 | CG2118-PC | 65..698 | 1..634 | 3231 | 100 | Plus |
| CG2118-PB | 634 | CG2118-PB | 1..634 | 1..634 | 3231 | 100 | Plus |
| CG2118-PA | 698 | CG2118-PA | 65..698 | 1..634 | 3231 | 100 | Plus |
| CG1516-PB | 1181 | CG1516-PB | 77..485 | 1..406 | 770 | 39.5 | Plus |
