Clone Sequence Records
BS15942.3prime Sequence
456 bp (456 high quality bases) assembled on 2007-04-16
> BS15942.3prime
ATGGTCTAGAAAGCTTTCATTTGAACTTCTTTCCGCCCTTTCTCGTCGTA
GGAGCATCCACGCTGGGCACCTGAACGGAGTAATACTTCGTGGAGATCCT
GTTAAGGAAGTAGAGCCCCACCAGGGAAAAGAGAACACTGGTGGTGGCGC
AGACACGATGCACGAGTCCCGCGGCGGCCACCGTGAGTGAGAGACAGAAA
ATAATCTCTGGTAGCAGCTTGGCCTGGAAGTCCTGGCCGAAAACAACCAT
CTCCGCGTTGGAGACGCACGTGAGGCTCAGGATGAACACCCAGGAGAAGA
GGTATCCGCCCAAAAGGACCCTCAGCTGCGAGTCGTTAAACCATTCTGAG
CAGAAACGCAGTGTGCCGAACAAAACAATGCTCAGGAGGCCCGAGATGAT
GGAGGATACCACGGTGCTCTTACTGCTCACTGAAGCGGACATGTCGACTG
ATAACT
BS15942.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-PA | 426 | CG31460-RA | 1..426 | 442..17 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 717 | CG31460-RB | 211..637 | 442..16 | 2135 | 100 | Minus |
CG31460-RA | 554 | CG31460-RA | 48..474 | 442..16 | 2135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8562943..8563365 | 438..16 | 2115 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:28:52 has no hits.
BS15942.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:32 Download gff for
BS15942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:38 Download gff for
BS15942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 9..449 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:20 Download gff for
BS15942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 9..449 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:20 Download gff for
BS15942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8562940..8563371 | 9..443 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:38 Download gff for
BS15942.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4388662..4389093 | 9..443 | 98 | | Minus |
BS15942.5prime Sequence
456 bp (456 high quality bases) assembled on 2007-04-16
> BS15942.5prime
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAATGAAAGCTTTC
TAGACC
BS15942.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-PA | 426 | CG31460-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 717 | CG31460-RB | 211..637 | 17..443 | 2135 | 100 | Plus |
CG31460-RA | 554 | CG31460-RA | 48..474 | 17..443 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8562943..8563365 | 21..443 | 2115 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:01:58 has no hits.
BS15942.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:32 Download gff for
BS15942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:47 Download gff for
BS15942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:19 Download gff for
BS15942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 42..480 | 10..450 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:19 Download gff for
BS15942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8562940..8563371 | 16..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:47 Download gff for
BS15942.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4388662..4389093 | 16..450 | 98 | | Plus |
BS15942.complete Sequence
458 bp assembled on 2007-05-07
GenBank Submission: FJ637988
> BS15942.complete
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAATGAAAGCTTTC
TAGACCAT
BS15942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 426 | CG31460-PB | 1..426 | 17..442 | 2130 | 100 | Plus |
CG31460-RA | 426 | CG31460-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-RB | 717 | CG31460-RB | 211..637 | 17..443 | 2135 | 100 | Plus |
CG31460-RA | 554 | CG31460-RA | 48..474 | 17..443 | 2135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8562943..8563365 | 21..443 | 2115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:39:21 has no hits.
BS15942.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:28 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:10 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 26..464 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:46 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 48..472 | 17..441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:28 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 26..464 | 10..450 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:42 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31460-RA | 48..472 | 17..441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:42 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8562941..8563363 | 17..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:46 Download gff for
BS15942.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4388663..4389085 | 17..441 | 99 | | Plus |
BS15942.pep Sequence
Translation from 16 to 441
> BS15942.pep
MSASVSSKSTVVSSIISGLLSIVLFGTLRFCSEWFNDSQLRVLLGGYLFS
WVFILSLTCVSNAEMVVFGQDFQAKLLPEIIFCLSLTVAAAGLVHRVCAT
TSVLFSLVGLYFLNRISTKYYSVQVPSVDAPTTRKGGKKFK*
BS15942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31460-PB | 141 | CG31460-PB | 1..141 | 1..141 | 705 | 100 | Plus |
CG31460-PA | 141 | CG31460-PA | 1..141 | 1..141 | 705 | 100 | Plus |