Clone BS15942 Report

Search the DGRC for BS15942

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG31460-RA
Protein status:BS15942.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15942.3prime Sequence

456 bp (456 high quality bases) assembled on 2007-04-16

> BS15942.3prime
ATGGTCTAGAAAGCTTTCATTTGAACTTCTTTCCGCCCTTTCTCGTCGTA
GGAGCATCCACGCTGGGCACCTGAACGGAGTAATACTTCGTGGAGATCCT
GTTAAGGAAGTAGAGCCCCACCAGGGAAAAGAGAACACTGGTGGTGGCGC
AGACACGATGCACGAGTCCCGCGGCGGCCACCGTGAGTGAGAGACAGAAA
ATAATCTCTGGTAGCAGCTTGGCCTGGAAGTCCTGGCCGAAAACAACCAT
CTCCGCGTTGGAGACGCACGTGAGGCTCAGGATGAACACCCAGGAGAAGA
GGTATCCGCCCAAAAGGACCCTCAGCTGCGAGTCGTTAAACCATTCTGAG
CAGAAACGCAGTGTGCCGAACAAAACAATGCTCAGGAGGCCCGAGATGAT
GGAGGATACCACGGTGCTCTTACTGCTCACTGAAGCGGACATGTCGACTG
ATAACT

BS15942.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-PA 426 CG31460-RA 1..426 442..17 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 717 CG31460-RB 211..637 442..16 2135 100 Minus
CG31460-RA 554 CG31460-RA 48..474 442..16 2135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8562943..8563365 438..16 2115 100 Minus
Blast to na_te.dros performed on 2015-02-05 02:28:52 has no hits.

BS15942.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:32 Download gff for BS15942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:12:38 Download gff for BS15942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 9..449 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:06:20 Download gff for BS15942.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 9..449 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:06:20 Download gff for BS15942.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8562940..8563371 9..443 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:12:38 Download gff for BS15942.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388662..4389093 9..443 98   Minus

BS15942.5prime Sequence

456 bp (456 high quality bases) assembled on 2007-04-16

> BS15942.5prime
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAATGAAAGCTTTC
TAGACC

BS15942.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-PA 426 CG31460-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 717 CG31460-RB 211..637 17..443 2135 100 Plus
CG31460-RA 554 CG31460-RA 48..474 17..443 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8562943..8563365 21..443 2115 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:01:58 has no hits.

BS15942.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:32 Download gff for BS15942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:19:47 Download gff for BS15942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:19 Download gff for BS15942.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 42..480 10..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:19 Download gff for BS15942.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8562940..8563371 16..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:19:47 Download gff for BS15942.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388662..4389093 16..450 98   Plus

BS15942.complete Sequence

458 bp assembled on 2007-05-07

GenBank Submission: FJ637988

> BS15942.complete
GAAGTTATCAGTCGACATGTCCGCTTCAGTGAGCAGTAAGAGCACCGTGG
TATCCTCCATCATCTCGGGCCTCCTGAGCATTGTTTTGTTCGGCACACTG
CGTTTCTGCTCAGAATGGTTTAACGACTCGCAGCTGAGGGTCCTTTTGGG
CGGATACCTCTTCTCCTGGGTGTTCATCCTGAGCCTCACGTGCGTCTCCA
ACGCGGAGATGGTTGTTTTCGGCCAGGACTTCCAGGCCAAGCTGCTACCA
GAGATTATTTTCTGTCTCTCACTCACGGTGGCCGCCGCGGGACTCGTGCA
TCGTGTCTGCGCCACCACCAGTGTTCTCTTTTCCCTGGTGGGGCTCTACT
TCCTTAACAGGATCTCCACGAAGTATTACTCCGTTCAGGTGCCCAGCGTG
GATGCTCCTACGACGAGAAAGGGCGGAAAGAAGTTCAAATGAAAGCTTTC
TAGACCAT

BS15942.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 426 CG31460-PB 1..426 17..442 2130 100 Plus
CG31460-RA 426 CG31460-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-RB 717 CG31460-RB 211..637 17..443 2135 100 Plus
CG31460-RA 554 CG31460-RA 48..474 17..443 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8562943..8563365 21..443 2115 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:39:21 has no hits.

BS15942.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:28 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:40:10 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 26..464 10..450 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:46 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 48..472 17..441 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:28 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 26..464 10..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:42 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
CG31460-RA 48..472 17..441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:42 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8562941..8563363 17..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:46 Download gff for BS15942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4388663..4389085 17..441 99   Plus

BS15942.pep Sequence

Translation from 16 to 441

> BS15942.pep
MSASVSSKSTVVSSIISGLLSIVLFGTLRFCSEWFNDSQLRVLLGGYLFS
WVFILSLTCVSNAEMVVFGQDFQAKLLPEIIFCLSLTVAAAGLVHRVCAT
TSVLFSLVGLYFLNRISTKYYSVQVPSVDAPTTRKGGKKFK*

BS15942.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31460-PB 141 CG31460-PB 1..141 1..141 705 100 Plus
CG31460-PA 141 CG31460-PA 1..141 1..141 705 100 Plus