Clone Sequence Records
BS15943.3prime Sequence
873 bp (762 high quality bases) assembled on 2007-04-16
> BS15943.3prime
ATGGTCTAGAAAGCTTTCATTTGGGCAAGTAGAACTTGCTGTTGGTGCCC
ACCACGTCCGCAACATTAGTGTGACCCAGCCGTGTGATCAGCGCCGACAG
CTCCGCCTTAATGTCTTCCACAAGAGCGGGTCCCTCGTACACTAAAGCCG
TGTAGATTTGGACGTAGGAAGCTCCAGCTTCGATCTTTTCGTATGCATCA
TAGCCGGAAGCCACTCCGCCGACGCCTATGATGGGAATCTTTCCATCGGT
GAGCTGGTACATCTGGGCGATCATCTCTGTGGAGCGGGCCTTGAGTGGAG
GACCACTTAATCCGCCAGTTTCCTCGGCCAGCTTGTTCTTTTCGATGTTT
TCCCGCGACACCGTGGTGTTTGAAACGATCAGGCCATCCACGCGGCTCTT
CTTGCGCTTGATTACCCACACGATGTCCTTCATGTCGTCCAAAGATAGAT
CCGGCGAAAGTTTCAAGAGTATAGGCACATTCTTGTTCTTATCCAGGGAG
GATTTCGTGTCGTTGACCTGTTCCAGGAGCTCTCTTAGCTTCTCCTTGCT
CTGCATATCGCGCAGGCCCTTGGTGTTCGGACTGCTCACATTAATGACCA
GGTAGTCTGCTACGGGCCCGAAAACCCGAACACCCTGTACATAATCCGCT
ATCGGGCTCATGGTGGTCTTGTTCCGGCCCAGATTCACGCCCACAACTCC
ATTGAAGTTCTCCTTTTTGCGGAGCAAGCGCAGCCGTTGGAGCACGGCCT
GATGCCCGTCGCTATTAAATCCGTACCGATTAATGATGGCCTTGTCCTCG
GTCAACCGGAATACTCTCGGCTTGGGATTGCCCTCCTGAGCCGCCGGGGT
AACTGTGCCCACCTCTATAATTC
BS15943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:07:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9741-PB | 1068 | Dhod-RB | 215..1068 | 870..17 | 4270 | 100 | Minus |
| CG9741-PA | 1218 | Dhod-RA | 365..1218 | 870..17 | 4270 | 100 | Minus |
| CG9741-PC | 1215 | Dhod-RC | 362..1215 | 870..17 | 4270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1472 | CG9741-RD | 497..1351 | 870..16 | 4275 | 100 | Minus |
| Dhod-RA | 1355 | CG9741-RA | 380..1234 | 870..16 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8651512..8652366 | 16..870 | 4275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:57:40 has no hits.
BS15943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:33 Download gff for
BS15943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9741-PC | 359..1215 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:24:18 Download gff for
BS15943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 377..1234 | 16..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:29:34 Download gff for
BS15943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 377..1234 | 16..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:29:34 Download gff for
BS15943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8651512..8652369 | 16..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:24:18 Download gff for
BS15943.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4477234..4478091 | 16..873 | 99 | | Plus |
BS15943.5prime Sequence
847 bp (760 high quality bases) assembled on 2007-04-16
> BS15943.5prime
GAAGTTATCAGTCGACATGGATCAGGATCACTTAAAGAATGCTAAAAACG
CCACGCGGAGAGTTGGTCGTTTGCGGTCGCTGGGAATCGTTACAGTCGGA
GGAGCTGCCTTGGTGGCGGGCATTACGGCATACAAGAACCAGGACCAGTT
GTTCCGGACCTTCGTGATGCCAGCGGTGCGACTTCTTCCGGCGGAAGCCA
GCCATCAACTGGCCGTGCTGGCGTGCAAGTACCGCCTGTGCCCGGTTTCA
CAGTACCATGATGACCAGAACTTGCACACGTCGTTCTTTGGCCGGATGCT
TAGCAATCCCATTGGCATTGCAGCGGGATTCGATAAGAACGCGGAGGCGG
TGGACGGCCTGCAGGATCTAGGATTCGGATTTATAGAGGTGGGCACAGTT
ACCCCGGCGGCTCAGGAGGGCAATCCCAAGCCGAGAGTATTCCGGTTGAC
CGAGGACAAGGCCATCATTAATCGGTACGGATTTAATAGCGACGGGCATC
AGGCCGTGCTCCAACGGCTGCGCTTGCTCCGCAAAAAGGAGAACTTCAAT
GGAGTTGTGGGCGTGAATCTGGGCCGGAACAAGACCACCATGAGCCCGAT
AGCGGATTATGTACAGGGTGTTCGGGTTTTCGGGCCCGTAGCAGACTACC
TGGTCATTAATGTGAGCAGTCCGAACACCAAGGGCCTGCGCGATATGCAG
AGCAAGGAGAAGCTAAGAGAGCTCCTGGAACAGGTCAACGACACGAAATC
CTCCCTGGATAAGAACAAGAATGTGCCTATACTCTTNGAACTTTCGCCGG
ATCTATCTTTGGACGACATGAAGGACATCGTGTGGGTAATCAAGCGC
BS15943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9741-PA | 1218 | Dhod-RA | 1..831 | 17..847 | 4111 | 99.7 | Plus |
| CG9741-PC | 1215 | Dhod-RC | 1..828 | 17..847 | 4041 | 99.3 | Plus |
| CG9741-PB | 1068 | Dhod-RB | 1..681 | 167..847 | 3361 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1472 | CG9741-RD | 126..963 | 10..847 | 4149 | 99.6 | Plus |
| Dhod-RA | 1355 | CG9741-RA | 9..846 | 10..847 | 4149 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8651900..8652682 | 847..65 | 3889 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8652736..8652791 | 65..10 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:29:04 has no hits.
BS15943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:33 Download gff for
BS15943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9741-PA | 1..831 | 17..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:36 Download gff for
BS15943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 7..846 | 7..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:27 Download gff for
BS15943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 7..846 | 7..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:27 Download gff for
BS15943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8651900..8652682 | 65..847 | 99 | <- | Minus |
| 3R | 8652737..8652793 | 7..64 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:36 Download gff for
BS15943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4477622..4478404 | 65..847 | 99 | <- | Minus |
| arm_3R | 4478459..4478515 | 7..64 | 96 | | Minus |
BS15943.complete Sequence
1250 bp assembled on 2007-05-07
GenBank Submission: FJ637989
> BS15943.complete
GAAGTTATCAGTCGACATGGATCAGGATCACTTAAAGAATGCTAAAAACG
CCACGCGGAGAGTTGGTCGTTTGCGGTCGCTGGGAATCGTTACAGTCGGA
GGAGCTGCCTTGGTGGCGGGCATTACGGCATACAAGAACCAGGACCAGTT
GTTCCGGACCTTCGTGATGCCAGCGGTGCGACTTCTTCCGGCGGAAGCCA
GCCATCAACTGGCCGTGCTGGCGTGCAAGTACCGCCTGTGCCCGGTTTCA
CAGTACCATGATGACCAGAACTTGCACACGTCGTTCTTTGGCCGGATGCT
TAGCAATCCCATTGGCATTGCAGCGGGATTCGATAAGAACGCGGAGGCGG
TGGACGGCCTGCAGGATCTAGGATTCGGATTTATAGAGGTGGGCACAGTT
ACCCCGGCGGCTCAGGAGGGCAATCCCAAGCCGAGAGTATTCCGGTTGAC
CGAGGACAAGGCCATCATTAATCGGTACGGATTTAATAGCGACGGGCATC
AGGCCGTGCTCCAACGGCTGCGCTTGCTCCGCAAAAAGGAGAACTTCAAT
GGAGTTGTGGGCGTGAATCTGGGCCGGAACAAGACCACCATGAGCCCGAT
AGCGGATTATGTACAGGGTGTTCGGGTTTTCGGGCCCGTAGCAGACTACC
TGGTCATTAATGTGAGCAGTCCGAACACCAAGGGCCTGCGCGATATGCAG
AGCAAGGAGAAGCTAAGAGAGCTCCTGGAACAGGTCAACGACACGAAATC
CTCCCTGGATAAGAACAAGAATGTGCCTATACTCTTGAAACTTTCGCCGG
ATCTATCTTTGGACGACATGAAGGACATCGTGTGGGTAATCAAGCGCAAG
AAGAGCCGCGTGGATGGCCTGATCGTTTCAAACACCACGGTGTCGCGGGA
AAACATCGAAAAGAACAAGCTGGCCGAGGAAACTGGCGGATTAAGTGGTC
CTCCACTCAAGGCCCGCTCCACAGAGATGATCGCCCAGATGTACCAGCTC
ACCGATGGAAAGATTCCCATCATAGGCGTCGGCGGAGTGGCTTCCGGCTA
TGATGCATACGAAAAGATCGAAGCTGGAGCTTCCTACGTCCAAATCTACA
CGGCTTTAGTGTACGAGGGACCCGCTCTTGTGGAAGACATTAAGGCGGAG
CTGTCGGCGCTGATCACACGGCTGGGTCACACTAATGTTGCGGACGTGGT
GGGCACCAACAGCAAGTTCTACTTGCCCAAATGAAAGCTTTCTAGACCAT
BS15943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1218 | CG9741-PD | 1..1218 | 17..1234 | 6090 | 100 | Plus |
| Dhod-RA | 1218 | CG9741-PA | 1..1218 | 17..1234 | 6090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1472 | CG9741-RD | 126..1351 | 10..1235 | 6115 | 99.9 | Plus |
| Dhod-RA | 1355 | CG9741-RA | 9..1234 | 10..1235 | 6115 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8651512..8652682 | 1235..65 | 5855 | 100 | Minus |
| 3R | 32079331 | 3R | 8652736..8652791 | 65..10 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:28:56 has no hits.
BS15943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:41 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 1..1218 | 17..1234 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:43 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RD | 124..1351 | 7..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:36 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 16..1232 | 17..1233 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:41 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 478..1705 | 7..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:13:58 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 16..1232 | 17..1233 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:13:58 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8651514..8652682 | 65..1233 | 100 | <- | Minus |
| 3R | 8652737..8652784 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:36 Download gff for
BS15943.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4477236..4478404 | 65..1233 | 100 | <- | Minus |
| arm_3R | 4478459..4478506 | 17..64 | 100 | | Minus |
BS15943.pep Sequence
Translation from 16 to 1233
> BS15943.pep
MDQDHLKNAKNATRRVGRLRSLGIVTVGGAALVAGITAYKNQDQLFRTFV
MPAVRLLPAEASHQLAVLACKYRLCPVSQYHDDQNLHTSFFGRMLSNPIG
IAAGFDKNAEAVDGLQDLGFGFIEVGTVTPAAQEGNPKPRVFRLTEDKAI
INRYGFNSDGHQAVLQRLRLLRKKENFNGVVGVNLGRNKTTMSPIADYVQ
GVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLDKN
KNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIEKN
KLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAYEK
IEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTNSK
FYLPK*
BS15943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-PD | 405 | CG9741-PD | 1..405 | 1..405 | 2053 | 100 | Plus |
| Dhod-PA | 405 | CG9741-PA | 1..405 | 1..405 | 2053 | 100 | Plus |
