Clone Sequence Records
BS15944.complete Sequence
1769 bp assembled on 2009-12-08
GenBank Submission: KX806097
> BS15944.complete
GAAGTTATCAGTCGACATGATGATGATGGCACCACACGATCGCGACTTTG
GTCACAGTGGACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGG
CGAGGAGGCGGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGG
CGATTACCACGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACC
GCGGAGGCGGCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGA
GGAGGAGGTGGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTT
CTCCAACCTGGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACG
TAGCAAACCGATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAG
ATCACCGTGCGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGT
CCATCTGCCCGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGG
CCCCCACCGCTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCG
AACTTCGTCGGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACAT
CCTGCCCGCTATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCG
ACGGACCTATCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAG
ATCCAGCAGGTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACAC
CTGCGTCTTCGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGC
GCGGCTGCGAGATCGTCATTGCCACACCCGGACGTCTTATTGATTTCCTC
TCCGCCGGCTCTACTAACTTGAAGCGTTGCACCTACTTGGTGCTGGACGA
GGCCGATCGCATGTTAGACATGGGCTTCGAGCCCCAGATCAGAAAGATCG
TCTCACAGATCCGGCCCGACCGACAGACGCTCATGTGGAGCGCTACCTGG
CCCAAGGAGGTCAAGCAGCTTGCCGAGGACTTTTTGGGCAACTACATCCA
GATCAACATTGGATCGCTGGAGCTGTCCGCCAATCACAACATCCGCCAGG
TGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAATTGAAGACCCTC
CTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCAAGATTATCATATT
CGTGGAGACAAAGCGACGCGTGGACAACCTGGTGCGCTTCATCCGCAGCT
TCGGAGTCCGTTGTGGAGCTATTCACGGTGACAAGTCGCAATCAGAACGA
GACTTTGTGCTCCGTGAGTTCCGCTCGGGCAAGTCCAACATTCTGGTGGC
CACCGATGTGGCGGCCCGTGGACTAGACGTGGACGGCATCAAGTATGTCA
TCAACTTTGACTACCCGCAAAACAGCGAGGACTACATCCATCGCATCGGT
CGCACAGGACGATCCAACACAAAGGGCACCTCTTTCGCCTTCTTCACCAA
GAACAATGCCAAGCAAGCCAAGGCGCTGGTCGACGTACTCCGAGAAGCTA
ATCAGGAAATCAATCCTGCCCTGGAAAATCTGGCCCGCAACTCGCGCTAC
GACGGTGGCGGCGGACGCTCCCGTTATGGAGGCGGTGGCGGCGGCGGTCG
CTTCGGCGGCGGCGGCTTCAAGAAGGGCAGCCTGAGCAACGGACGAGGCT
TCGGAGGAGGCGGCGGCGGCGGCGGCGAAGGCAGACACTCGCGCTTCGAC
TAGAAGCTTTCTAGACCAT
BS15944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-RF | 1737 | CG10279-PF | 1..1737 | 17..1753 | 8670 | 99.9 | Plus |
Rm62-RB | 1737 | CG10279-PB | 1..1737 | 17..1753 | 8670 | 99.9 | Plus |
Rm62-RC | 1737 | CG10279-PC | 1..1737 | 17..1753 | 8670 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-RF | 2833 | CG10279-RF | 365..2102 | 17..1754 | 8675 | 99.9 | Plus |
Rm62-RB | 3087 | CG10279-RB | 619..2356 | 17..1754 | 8675 | 99.9 | Plus |
Rm62-RC | 2849 | CG10279-RC | 381..2118 | 17..1754 | 8675 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6004017..6005126 | 1137..28 | 5535 | 99.9 | Minus |
3R | 32079331 | 3R | 6003673..6003911 | 1376..1138 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 6001162..6001365 | 1754..1551 | 1020 | 100 | Minus |
3R | 32079331 | 3R | 6001557..6001739 | 1556..1374 | 915 | 100 | Minus |
X | 23542271 | X | 7928923..7929222 | 1099..800 | 435 | 76.3 | Minus |
X | 23542271 | X | 7929323..7929525 | 705..503 | 295 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:27:38 has no hits.
BS15944.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:15 Download gff for
BS15944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RF | 388..2124 | 17..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:41 Download gff for
BS15944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RC | 381..2117 | 17..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:36 Download gff for
BS15944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RF | 388..2124 | 17..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:53 Download gff for
BS15944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RC | 381..2117 | 17..1753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:53 Download gff for
BS15944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6001163..6001360 | 1556..1753 | 100 | <- | Minus |
3R | 6001558..6001736 | 1377..1555 | 100 | <- | Minus |
3R | 6003673..6003911 | 1138..1376 | 100 | <- | Minus |
3R | 6004017..6005126 | 28..1137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:41 Download gff for
BS15944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1826885..1827082 | 1556..1753 | 100 | <- | Minus |
arm_3R | 1827280..1827458 | 1377..1555 | 100 | <- | Minus |
arm_3R | 1829395..1829633 | 1138..1376 | 100 | <- | Minus |
arm_3R | 1829739..1830848 | 28..1137 | 99 | | Minus |
BS15944.3prime Sequence
923 bp (724 high quality bases) assembled on 2007-04-16
> BS15944.3prime
ATGGTCTAGAAAGCTTCTAGTCGAAGCGCGAGTGTCTGCCTTCGCCGCCG
CCGCCGCCGCCTCCTCCGAAGCCTCGTCCGTTGCTCAGGCTGCCCTTCTT
GAAGCCGCCGCCGCCGAAGCGACCGCCGCCGCCACCGCCTCCATAACGGG
AGCGTCCGCCGCCACCGTCGTAGCGCGAGTTGCGGGCCAGATTTTCCAGG
GCAGGATTGATTTCCTGATTAGCTTCTCGGAGTACGTCGACCAGCGCCTT
GGCTTGCTTGGCATTGTTCTTGGTGAAGAAGGCGAAAGAGGTGCCCTTTG
TGTTGGATCGTCCTGTGCGACCGATGCGATGGATGTAGTCCTCGCTGTTT
TGCGGGTAGTCAAAGTTGATGACATACTTGATGCCGTCCACGTCTAGTCC
ACGGGCCGCCACATCGGTGGCCACCAGAATGTTGGACTTGCCCGAGCGGA
ACTCACGGAGCACAAAGTCTCGTTCTGATTGCGACTTGTCACCGTGAATA
GCTCCACAACGGACTCCGAAGCTGCGGATGAAGCGCACCAGGTTGTCCAC
GCGTCGCTTTGTCTCCACGAATATGATAATCTTGCCGGGGCTCTCGCTGG
TGTCGTAGATGTCTGACAGGAGGGTCTTCAATTTCTCCTCCTTGCTGAAC
TCGTCACAAACGTCCACCACCTGGCGGATGTTGTGATTGGCGGACAGCTC
CAGCGATCCAATGTTGATCTGGATGTAGTTGCCCAAAAAGTCCTCGGCAA
GCTGCTTGACCTCCTTGAGCCAGGTAGCGCTCCACATGAGCGTCTGTCGG
TCGGGCCGGATCTGTGAGACGATCTTTCTGATCTGGGGCTCGAAGCCATG
TCTAACTTGCGATCGGCCTCGTCCAGCACCAAGTAGGTGCAACGCTTCAA
GTTAGTAGAGCCGGGGGAAAAGG
BS15944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10279-PC | 1737 | Rm62-RC | 839..1737 | 914..17 | 4380 | 99.5 | Minus |
CG10279-PD | 1728 | Rm62-RD | 830..1728 | 914..17 | 4380 | 99.5 | Minus |
CG10279-PB | 1737 | Rm62-RB | 839..1737 | 914..17 | 4380 | 99.5 | Minus |
CG10279-PA | 2160 | Rm62-RA | 1262..2160 | 914..17 | 4380 | 99.5 | Minus |
CG10279-PE | 1737 | Rm62-RE | 839..1737 | 914..17 | 4380 | 99.5 | Minus |
CG10279-PF | 1737 | Rm62-RF | 839..1737 | 914..17 | 4380 | 99.5 | Minus |
CG10077-PB | 474 | CG10077-RB | 13..39 | 847..821 | 135 | 100 | Minus |
CG10077-PA | 2457 | CG10077-RA | 958..984 | 847..821 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-RH | 2760 | CG10279-RH | 1126..2029 | 918..16 | 4435 | 99.4 | Minus |
Rm62-RI | 3153 | CG10279-RI | 1514..2417 | 918..16 | 4435 | 99.4 | Minus |
Rm62-RF | 2833 | CG10279-RF | 1199..2102 | 918..16 | 4435 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6004017..6004303 | 633..918 | 1325 | 98.3 | Plus |
3R | 32079331 | 3R | 6003673..6003911 | 394..632 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 6001162..6001365 | 16..219 | 1020 | 100 | Plus |
3R | 32079331 | 3R | 6001557..6001739 | 214..396 | 915 | 100 | Plus |
3L | 28110227 | 3L | 6954023..6954274 | 650..900 | 430 | 79 | Plus |
X | 23542271 | X | 7928923..7929159 | 671..906 | 325 | 76.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:24:03 has no hits.
BS15944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:33 Download gff for
BS15944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10279-PD | 822..1728 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:28 Download gff for
BS15944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RF | 1195..2102 | 16..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:37 Download gff for
BS15944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RF | 1195..2102 | 16..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:37 Download gff for
BS15944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6004017..6004307 | 633..923 | 97 | | Plus |
3R | 6001162..6001360 | 16..214 | 100 | <- | Plus |
3R | 6001558..6001736 | 215..393 | 100 | <- | Plus |
3R | 6003673..6003911 | 394..632 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:28 Download gff for
BS15944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1829395..1829633 | 394..632 | 100 | <- | Plus |
arm_3R | 1826884..1827082 | 16..214 | 100 | <- | Plus |
arm_3R | 1827280..1827458 | 215..393 | 100 | <- | Plus |
arm_3R | 1829739..1830029 | 633..923 | 97 | | Plus |
BS15944.5prime Sequence
896 bp (796 high quality bases) assembled on 2007-04-16
> BS15944.5prime
GAAGTTATCCGTCGACATGATGATGATGGCACCACACGATCGCGACTTTG
GTCACAGTGGACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGG
CGAGGAGGCGGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGG
CGATTACCACGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACC
GCGGAGGCGGCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGA
GGAGGAGGTGGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTT
CTCCAACCTGGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACG
TAGCAAACCGATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAG
ATCACCGTGCGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGT
CCATCTGCCCGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGG
CCCCCACCGCTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCG
AACTTCGTCGGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACAT
CCTGCCCGCTATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCG
ACGGACCTATCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAG
ATCCAGCAGGTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACAC
CTGCGTCTTCGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGC
GCGGCTGCGAGATCGTCATTGCCACCCCCGGACGTCTTATTGATTTCCTC
TCCGCCGGCTCTACTAACTTGAAGCGTTGCACCTACTTGGTGCTGG
BS15944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10279-PC | 1737 | Rm62-RC | 1..880 | 17..896 | 4350 | 99.7 | Plus |
CG10279-PB | 1737 | Rm62-RB | 1..880 | 17..896 | 4350 | 99.7 | Plus |
CG10279-PF | 1737 | Rm62-RF | 1..880 | 17..896 | 4350 | 99.7 | Plus |
CG10279-PD | 1728 | Rm62-RD | 1..871 | 26..896 | 4305 | 99.7 | Plus |
CG10279-PA | 2160 | Rm62-RA | 433..1303 | 26..896 | 4305 | 99.7 | Plus |
CG10279-PE | 1737 | Rm62-RE | 12..880 | 28..896 | 4295 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-RF | 2833 | CG10279-RF | 365..1244 | 17..896 | 4370 | 99.8 | Plus |
Rm62-RB | 3087 | CG10279-RB | 619..1498 | 17..896 | 4370 | 99.8 | Plus |
Rm62-RC | 2849 | CG10279-RC | 381..1260 | 17..896 | 4370 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6004258..6005126 | 896..28 | 4315 | 99.8 | Minus |
3L | 28110227 | 3L | 6954293..6954628 | 850..515 | 345 | 73.5 | Minus |
X | 23542271 | X | 7929323..7929525 | 705..503 | 295 | 76.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:08:49 has no hits.
BS15944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:34 Download gff for
BS15944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10279-PF | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:33 Download gff for
BS15944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RC | 381..1260 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:12 Download gff for
BS15944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RC | 381..1260 | 17..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:12 Download gff for
BS15944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6004258..6005126 | 28..896 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:33 Download gff for
BS15944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1829980..1830848 | 28..896 | 99 | <- | Minus |
BS15944.pep Sequence
Translation from 16 to 1752
> BS15944.pep
MMMMAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGI
RNGRVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAP
FKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDY
VMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV
HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGG
APKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRML
DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGS
LELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKR
RVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAA
RGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ
AKALVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGG
FKKGSLSNGRGFGGGGGGGGEGRHSRFD*
BS15944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-PF | 578 | CG10279-PF | 1..578 | 1..578 | 3061 | 100 | Plus |
Rm62-PB | 578 | CG10279-PB | 1..578 | 1..578 | 3061 | 100 | Plus |
Rm62-PC | 578 | CG10279-PC | 1..578 | 1..578 | 3061 | 100 | Plus |
Rm62-PA | 719 | CG10279-PA | 144..719 | 3..578 | 3047 | 99.8 | Plus |
Rm62-PH | 575 | CG10279-PH | 1..575 | 4..578 | 3046 | 100 | Plus |