Clone BS15944 Report

Search the DGRC for BS15944

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptRm62-RB
Protein status:BS15944.pep: full length peptide match
Sequenced Size:1769

Clone Sequence Records

BS15944.complete Sequence

1769 bp assembled on 2009-12-08

GenBank Submission: KX806097

> BS15944.complete
GAAGTTATCAGTCGACATGATGATGATGGCACCACACGATCGCGACTTTG
GTCACAGTGGACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGG
CGAGGAGGCGGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGG
CGATTACCACGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACC
GCGGAGGCGGCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGA
GGAGGAGGTGGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTT
CTCCAACCTGGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACG
TAGCAAACCGATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAG
ATCACCGTGCGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGT
CCATCTGCCCGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGG
CCCCCACCGCTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCG
AACTTCGTCGGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACAT
CCTGCCCGCTATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCG
ACGGACCTATCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAG
ATCCAGCAGGTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACAC
CTGCGTCTTCGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGC
GCGGCTGCGAGATCGTCATTGCCACACCCGGACGTCTTATTGATTTCCTC
TCCGCCGGCTCTACTAACTTGAAGCGTTGCACCTACTTGGTGCTGGACGA
GGCCGATCGCATGTTAGACATGGGCTTCGAGCCCCAGATCAGAAAGATCG
TCTCACAGATCCGGCCCGACCGACAGACGCTCATGTGGAGCGCTACCTGG
CCCAAGGAGGTCAAGCAGCTTGCCGAGGACTTTTTGGGCAACTACATCCA
GATCAACATTGGATCGCTGGAGCTGTCCGCCAATCACAACATCCGCCAGG
TGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAATTGAAGACCCTC
CTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCAAGATTATCATATT
CGTGGAGACAAAGCGACGCGTGGACAACCTGGTGCGCTTCATCCGCAGCT
TCGGAGTCCGTTGTGGAGCTATTCACGGTGACAAGTCGCAATCAGAACGA
GACTTTGTGCTCCGTGAGTTCCGCTCGGGCAAGTCCAACATTCTGGTGGC
CACCGATGTGGCGGCCCGTGGACTAGACGTGGACGGCATCAAGTATGTCA
TCAACTTTGACTACCCGCAAAACAGCGAGGACTACATCCATCGCATCGGT
CGCACAGGACGATCCAACACAAAGGGCACCTCTTTCGCCTTCTTCACCAA
GAACAATGCCAAGCAAGCCAAGGCGCTGGTCGACGTACTCCGAGAAGCTA
ATCAGGAAATCAATCCTGCCCTGGAAAATCTGGCCCGCAACTCGCGCTAC
GACGGTGGCGGCGGACGCTCCCGTTATGGAGGCGGTGGCGGCGGCGGTCG
CTTCGGCGGCGGCGGCTTCAAGAAGGGCAGCCTGAGCAACGGACGAGGCT
TCGGAGGAGGCGGCGGCGGCGGCGGCGAAGGCAGACACTCGCGCTTCGAC
TAGAAGCTTTCTAGACCAT

BS15944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RF 1737 CG10279-PF 1..1737 17..1753 8670 99.9 Plus
Rm62-RB 1737 CG10279-PB 1..1737 17..1753 8670 99.9 Plus
Rm62-RC 1737 CG10279-PC 1..1737 17..1753 8670 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RF 2833 CG10279-RF 365..2102 17..1754 8675 99.9 Plus
Rm62-RB 3087 CG10279-RB 619..2356 17..1754 8675 99.9 Plus
Rm62-RC 2849 CG10279-RC 381..2118 17..1754 8675 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6004017..6005126 1137..28 5535 99.9 Minus
3R 32079331 3R 6003673..6003911 1376..1138 1195 100 Minus
3R 32079331 3R 6001162..6001365 1754..1551 1020 100 Minus
3R 32079331 3R 6001557..6001739 1556..1374 915 100 Minus
X 23542271 X 7928923..7929222 1099..800 435 76.3 Minus
X 23542271 X 7929323..7929525 705..503 295 76.4 Minus
Blast to na_te.dros performed on 2014-11-28 02:27:38 has no hits.

BS15944.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:15 Download gff for BS15944.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RF 388..2124 17..1753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:41 Download gff for BS15944.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RC 381..2117 17..1753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:36 Download gff for BS15944.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RF 388..2124 17..1753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:53 Download gff for BS15944.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RC 381..2117 17..1753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:53 Download gff for BS15944.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6001163..6001360 1556..1753 100 <- Minus
3R 6001558..6001736 1377..1555 100 <- Minus
3R 6003673..6003911 1138..1376 100 <- Minus
3R 6004017..6005126 28..1137 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:41 Download gff for BS15944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1826885..1827082 1556..1753 100 <- Minus
arm_3R 1827280..1827458 1377..1555 100 <- Minus
arm_3R 1829395..1829633 1138..1376 100 <- Minus
arm_3R 1829739..1830848 28..1137 99   Minus

BS15944.3prime Sequence

923 bp (724 high quality bases) assembled on 2007-04-16

> BS15944.3prime
ATGGTCTAGAAAGCTTCTAGTCGAAGCGCGAGTGTCTGCCTTCGCCGCCG
CCGCCGCCGCCTCCTCCGAAGCCTCGTCCGTTGCTCAGGCTGCCCTTCTT
GAAGCCGCCGCCGCCGAAGCGACCGCCGCCGCCACCGCCTCCATAACGGG
AGCGTCCGCCGCCACCGTCGTAGCGCGAGTTGCGGGCCAGATTTTCCAGG
GCAGGATTGATTTCCTGATTAGCTTCTCGGAGTACGTCGACCAGCGCCTT
GGCTTGCTTGGCATTGTTCTTGGTGAAGAAGGCGAAAGAGGTGCCCTTTG
TGTTGGATCGTCCTGTGCGACCGATGCGATGGATGTAGTCCTCGCTGTTT
TGCGGGTAGTCAAAGTTGATGACATACTTGATGCCGTCCACGTCTAGTCC
ACGGGCCGCCACATCGGTGGCCACCAGAATGTTGGACTTGCCCGAGCGGA
ACTCACGGAGCACAAAGTCTCGTTCTGATTGCGACTTGTCACCGTGAATA
GCTCCACAACGGACTCCGAAGCTGCGGATGAAGCGCACCAGGTTGTCCAC
GCGTCGCTTTGTCTCCACGAATATGATAATCTTGCCGGGGCTCTCGCTGG
TGTCGTAGATGTCTGACAGGAGGGTCTTCAATTTCTCCTCCTTGCTGAAC
TCGTCACAAACGTCCACCACCTGGCGGATGTTGTGATTGGCGGACAGCTC
CAGCGATCCAATGTTGATCTGGATGTAGTTGCCCAAAAAGTCCTCGGCAA
GCTGCTTGACCTCCTTGAGCCAGGTAGCGCTCCACATGAGCGTCTGTCGG
TCGGGCCGGATCTGTGAGACGATCTTTCTGATCTGGGGCTCGAAGCCATG
TCTAACTTGCGATCGGCCTCGTCCAGCACCAAGTAGGTGCAACGCTTCAA
GTTAGTAGAGCCGGGGGAAAAGG

BS15944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10279-PC 1737 Rm62-RC 839..1737 914..17 4380 99.5 Minus
CG10279-PD 1728 Rm62-RD 830..1728 914..17 4380 99.5 Minus
CG10279-PB 1737 Rm62-RB 839..1737 914..17 4380 99.5 Minus
CG10279-PA 2160 Rm62-RA 1262..2160 914..17 4380 99.5 Minus
CG10279-PE 1737 Rm62-RE 839..1737 914..17 4380 99.5 Minus
CG10279-PF 1737 Rm62-RF 839..1737 914..17 4380 99.5 Minus
CG10077-PB 474 CG10077-RB 13..39 847..821 135 100 Minus
CG10077-PA 2457 CG10077-RA 958..984 847..821 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RH 2760 CG10279-RH 1126..2029 918..16 4435 99.4 Minus
Rm62-RI 3153 CG10279-RI 1514..2417 918..16 4435 99.4 Minus
Rm62-RF 2833 CG10279-RF 1199..2102 918..16 4435 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6004017..6004303 633..918 1325 98.3 Plus
3R 32079331 3R 6003673..6003911 394..632 1195 100 Plus
3R 32079331 3R 6001162..6001365 16..219 1020 100 Plus
3R 32079331 3R 6001557..6001739 214..396 915 100 Plus
3L 28110227 3L 6954023..6954274 650..900 430 79 Plus
X 23542271 X 7928923..7929159 671..906 325 76.8 Plus
Blast to na_te.dros performed on 2015-02-13 06:24:03 has no hits.

BS15944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:33 Download gff for BS15944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10279-PD 822..1728 17..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:48:28 Download gff for BS15944.3prime
Subject Subject Range Query Range Percent Splice Strand
Rm62-RF 1195..2102 16..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:30:37 Download gff for BS15944.3prime
Subject Subject Range Query Range Percent Splice Strand
Rm62-RF 1195..2102 16..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:30:37 Download gff for BS15944.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6004017..6004307 633..923 97   Plus
3R 6001162..6001360 16..214 100 <- Plus
3R 6001558..6001736 215..393 100 <- Plus
3R 6003673..6003911 394..632 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:48:28 Download gff for BS15944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1829395..1829633 394..632 100 <- Plus
arm_3R 1826884..1827082 16..214 100 <- Plus
arm_3R 1827280..1827458 215..393 100 <- Plus
arm_3R 1829739..1830029 633..923 97   Plus

BS15944.5prime Sequence

896 bp (796 high quality bases) assembled on 2007-04-16

> BS15944.5prime
GAAGTTATCCGTCGACATGATGATGATGGCACCACACGATCGCGACTTTG
GTCACAGTGGACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGG
CGAGGAGGCGGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGG
CGATTACCACGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACC
GCGGAGGCGGCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGA
GGAGGAGGTGGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTT
CTCCAACCTGGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACG
TAGCAAACCGATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAG
ATCACCGTGCGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGT
CCATCTGCCCGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGG
CCCCCACCGCTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCG
AACTTCGTCGGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACAT
CCTGCCCGCTATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCG
ACGGACCTATCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAG
ATCCAGCAGGTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACAC
CTGCGTCTTCGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGC
GCGGCTGCGAGATCGTCATTGCCACCCCCGGACGTCTTATTGATTTCCTC
TCCGCCGGCTCTACTAACTTGAAGCGTTGCACCTACTTGGTGCTGG

BS15944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10279-PC 1737 Rm62-RC 1..880 17..896 4350 99.7 Plus
CG10279-PB 1737 Rm62-RB 1..880 17..896 4350 99.7 Plus
CG10279-PF 1737 Rm62-RF 1..880 17..896 4350 99.7 Plus
CG10279-PD 1728 Rm62-RD 1..871 26..896 4305 99.7 Plus
CG10279-PA 2160 Rm62-RA 433..1303 26..896 4305 99.7 Plus
CG10279-PE 1737 Rm62-RE 12..880 28..896 4295 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RF 2833 CG10279-RF 365..1244 17..896 4370 99.8 Plus
Rm62-RB 3087 CG10279-RB 619..1498 17..896 4370 99.8 Plus
Rm62-RC 2849 CG10279-RC 381..1260 17..896 4370 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6004258..6005126 896..28 4315 99.8 Minus
3L 28110227 3L 6954293..6954628 850..515 345 73.5 Minus
X 23542271 X 7929323..7929525 705..503 295 76.4 Minus
Blast to na_te.dros performed on 2015-02-11 19:08:49 has no hits.

BS15944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:34 Download gff for BS15944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10279-PF 1..880 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:11:33 Download gff for BS15944.5prime
Subject Subject Range Query Range Percent Splice Strand
Rm62-RC 381..1260 17..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:04:12 Download gff for BS15944.5prime
Subject Subject Range Query Range Percent Splice Strand
Rm62-RC 381..1260 17..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:04:12 Download gff for BS15944.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6004258..6005126 28..896 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:11:33 Download gff for BS15944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1829980..1830848 28..896 99 <- Minus

BS15944.pep Sequence

Translation from 16 to 1752

> BS15944.pep
MMMMAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGI
RNGRVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAP
FKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDY
VMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV
HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGG
APKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRML
DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGS
LELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKR
RVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAA
RGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ
AKALVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGG
FKKGSLSNGRGFGGGGGGGGEGRHSRFD*

BS15944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-PF 578 CG10279-PF 1..578 1..578 3061 100 Plus
Rm62-PB 578 CG10279-PB 1..578 1..578 3061 100 Plus
Rm62-PC 578 CG10279-PC 1..578 1..578 3061 100 Plus
Rm62-PA 719 CG10279-PA 144..719 3..578 3047 99.8 Plus
Rm62-PH 575 CG10279-PH 1..575 4..578 3046 100 Plus