Clone Sequence Records
BS15945.3prime Sequence
777 bp (777 high quality bases) assembled on 2007-04-16
> BS15945.3prime
ATGGTCTAGAAAGCTTTTATCTGCCGTAGAAACTGAAGATGCTCCTGTCA
GCCAGCTTCTTTGGCGTATACTGCCACGCATCGGACCTAGACCCCACCTC
CAGTGCTTCCTGATCCTGCCCCTGATCCTGCAGTGCGTCGCGAACGAAGA
ATACTCCTCTGGCGCCAAAGCGCAGGCAGCTGAAGCGGTACTCGAAGAAC
TGGCTGGCCAGAACTTTAAAGACCACCGACAGACATATCTGCATGTTGCC
CTCGCCGAACGCACGGATGTCGTAGAGTCTGAGGCAGCTGGAGAGCGGCA
GCGGCACGCAGTATTCGGGCGGATTTCGAGTCGAGAACCCGAAGGTTGCC
ACCTTGCGCTGGTTTATCTCGACGCTGAGGCGCAGACCTAGATCCGCCCG
GGTGTAGTCGAGGGCGGCGCACAACCGCTGGTTGGCTGATTCGCCGAGTC
CCAGAGCCAGGCCAAGGCAGCACCGGCAAGAGAACTCGACGCAGGAGCAG
GGCTGCCAGAGCTGGGGTAGCTCTACGATGTTACCGTTCACGGGCTGCCG
TCTGCCCCGCGAAACAGCCGAGTACCGCAGCGGCTCCAGCTGTTGGCCAC
TAAAGGGGTTGTAGATAACCAGTCGTGGCACTGCACCCGGAAAATCAGCG
GGACTCGGATCCCGCCCCAGCGCGTCTAGAGCGTAGAACTCCGTCCGACA
GGGCACGACGACCGTCGTCAGCAGGCAGATCAGTCCGGGGATATTTCTTA
GTCGCCGGCACATGTCGACTGATAACT
BS15945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-PA | 747 | CG31516-RA | 1..747 | 763..17 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-RA | 1668 | CG31516-RA | 434..1181 | 764..17 | 3740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4218950..4219697 | 17..764 | 3740 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:13:13 has no hits.
BS15945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:34 Download gff for
BS15945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-PA | 1..747 | 17..763 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:49 Download gff for
BS15945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 425..1185 | 11..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:53:56 Download gff for
BS15945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 425..1185 | 11..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:53:56 Download gff for
BS15945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4218946..4219706 | 11..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:49 Download gff for
BS15945.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 44668..45428 | 11..774 | 99 | | Plus |
BS15945.5prime Sequence
777 bp (764 high quality bases) assembled on 2007-04-16
> BS15945.5prime
GAAGTTATCAGTCGACATGTGCCGGCGACTAAGAAATATCCCCGGACTGA
TCTGCCTGCTGACGACGGTCGTCGTGCCCTGTCGGACGGAGTTCTACGCT
CTAGACGCGCTGGGGCGGGATCCGAGTCCCGCTGATTTTCCGGGTGCAGT
GCCACGACTGGTTATCTACAACCCCTTTAGTGGCCAACAGCTGGAGCCGC
TGCGGTACTCGGCTGTTTCGCGGGGCAGACGGCAGCCCGTGAACGGTAAC
ATCGTAGAGCTACCCCAGCTCTGGCAGCCCTGCTCCTGCGTCGAGTTCTC
TTGCCGGTGCTGCCTTGGCCTGGCTCTGGGACTCGGCGAATCAGCCAACC
AGCGGTTGTGCGCCGCCCTCGACTACACCCGGGCGGATCTAGGTCTGCGC
CTCAGCGTCGAGATAAACCAGCGCAAGGTGGCAACCTTCGGGTTCTCGAC
TCGAAATCCGCCCGAATACTGCGTGCCGCTGCCGCTCTCCAGCTGCCTCA
GACTCTACGACATCCGTGCGTTCGGCGAGGGCAACATGCAGATATGTCTG
TCGGTGGTCTTTAAAGTTCTGGCCAGCCAGTTCTTCGAGTACCGCTTCAG
CTGCCTGCGCTTTGGCGCCAGAGGAGTATTCTTCGTTCGCGACGCACTGC
AGGATCAGGGGCAGGATCAGGAAGCACTGGAGGTGGGGTCTAGGTCCGAT
GCGTGGCAGTATACGCCAAAGAAGCTGGCTGACAGGAGCATCTTCAGTTT
CTACGGCAGATAAAAGCTTTCTAGACC
BS15945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-PA | 747 | CG31516-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-RA | 1668 | CG31516-RA | 434..1181 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4218950..4219697 | 763..16 | 3740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:52:55 has no hits.
BS15945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:35 Download gff for
BS15945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:48:45 Download gff for
BS15945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 425..1185 | 6..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:56:03 Download gff for
BS15945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 425..1185 | 6..769 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:56:03 Download gff for
BS15945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4218946..4219706 | 6..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:48:45 Download gff for
BS15945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 44668..45428 | 6..769 | 99 | | Minus |
BS15945.complete Sequence
779 bp assembled on 2007-05-07
GenBank Submission: FJ637990
> BS15945.complete
GAAGTTATCAGTCGACATGTGCCGGCGACTAAGAAATATCCCCGGACTGA
TCTGCCTGCTGACGACGGTCGTCGTGCCCTGTCGGACGGAGTTCTACGCT
CTAGACGCGCTGGGGCGGGATCCGAGTCCCGCTGATTTTCCGGGTGCAGT
GCCACGACTGGTTATCTACAACCCCTTTAGTGGCCAACAGCTGGAGCCGC
TGCGGTACTCGGCTGTTTCGCGGGGCAGACGGCAGCCCGTGAACGGTAAC
ATCGTAGAGCTACCCCAGCTCTGGCAGCCCTGCTCCTGCGTCGAGTTCTC
TTGCCGGTGCTGCCTTGGCCTGGCTCTGGGACTCGGCGAATCAGCCAACC
AGCGGTTGTGCGCCGCCCTCGACTACACCCGGGCGGATCTAGGTCTGCGC
CTCAGCGTCGAGATAAACCAGCGCAAGGTGGCAACCTTCGGGTTCTCGAC
TCGAAATCCGCCCGAATACTGCGTGCCGCTGCCGCTCTCCAGCTGCCTCA
GACTCTACGACATCCGTGCGTTCGGCGAGGGCAACATGCAGATATGTCTG
TCGGTGGTCTTTAAAGTTCTGGCCAGCCAGTTCTTCGAGTACCGCTTCAG
CTGCCTGCGCTTTGGCGCCAGAGGAGTATTCTTCGTTCGCGACGCACTGC
AGGATCAGGGGCAGGATCAGGAAGCACTGGAGGTGGGGTCTAGGTCCGAT
GCGTGGCAGTATACGCCAAAGAAGCTGGCTGACAGGAGCATCTTCAGTTT
CTACGGCAGATAAAAGCTTTCTAGACCAT
BS15945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-RA | 747 | CG31516-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-RA | 1668 | CG31516-RA | 434..1181 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4218950..4219697 | 763..16 | 3740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:30:23 has no hits.
BS15945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:51:07 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:39:50 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 425..1185 | 6..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:35 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 435..1179 | 17..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:51:08 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 425..1185 | 6..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:40 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31516-RA | 435..1179 | 17..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:40 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4218952..4219696 | 17..761 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:35 Download gff for
BS15945.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 44674..45418 | 17..761 | 100 | | Minus |
BS15945.pep Sequence
Translation from 16 to 762
> BS15945.pep
MCRRLRNIPGLICLLTTVVVPCRTEFYALDALGRDPSPADFPGAVPRLVI
YNPFSGQQLEPLRYSAVSRGRRQPVNGNIVELPQLWQPCSCVEFSCRCCL
GLALGLGESANQRLCAALDYTRADLGLRLSVEINQRKVATFGFSTRNPPE
YCVPLPLSSCLRLYDIRAFGEGNMQICLSVVFKVLASQFFEYRFSCLRFG
ARGVFFVRDALQDQGQDQEALEVGSRSDAWQYTPKKLADRSIFSFYGR*
BS15945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31516-PA | 248 | CG31516-PA | 1..248 | 1..248 | 1315 | 100 | Plus |
| CG8568-PA | 759 | CG8568-PA | 46..227 | 66..232 | 198 | 27 | Plus |
| CG34038-PC | 237 | CG34038-PC | 80..198 | 88..207 | 148 | 29 | Plus |
| CG34038-PB | 271 | CG34038-PB | 114..232 | 88..207 | 148 | 29 | Plus |
