Clone BS15946 Report

Search the DGRC for BS15946

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG1399-RA
Protein status:BS15946.pep: full length peptide match
Sequenced Size:2000

Clone Sequence Records

BS15946.complete Sequence

2000 bp assembled on 2009-12-07

GenBank Submission: KX805722

> BS15946.complete
GAAGTTATCAGTCGACATGGGTCTCATGCGCACTTTGTGCTGCTGCTTCG
GTGCAGGGCAGAGTAATCAGTCTTCGGGCGCAAGTCCAGCTTATAAGGCG
TGTCCGGACGAGGAGCCTTTGGAGGAGTTGGTCACAGATCCAGAAAGAGC
GGATCAGTCTCCTAAGAATGAGATCGAACAATCCCTGGCCGCCGCCATCT
CAGACCGTGCTACGGATGAGGTGCTGGAGGCCCTGACCCGCTACCGCCGT
GGCATGGGCATCGCGGAATCGCCATCGGTGCTGCTAGACGAACCGCAGAC
GCCGGACATCGTGCGCAGTCGCTCCAGTCATGATGCGGATGGTTTAATCA
TACGACCGGGTGGACGAGGCTCGATATTGCCCAAACTGGGCTTGGAATCG
CCCACTGCCACACCGCATCTGCCCACCAAGCGACGCAGTCTGGCAAAGAA
AGTGCGTCCCCAGTCCGTGGTGGAGAATCTCAGCCTGGGCCACTTCCCTG
ACCTCCTGGAGTCACCCTCCTCGCACCGATCTAACTCCCAGTTGTCCGCC
CGTGCAGCTGCAGGTGCCGCCGCCTTGGTGGGAGCCGCCAATATGACCGA
CAGCATCGCTGTGGACGACGGAGGAGTGGATGAGTGTTGCGACTCCATCA
CCGAGCTGCCCAGCGCCTCGTTCCAGCTCCAGCATCTGGTCAAAGGACGT
CCGAAGCGGGCCAAAACGCGTGCACCAACTCGGCCGTTGGTCACCACCGA
GTGCGCCGGGGGCAGCAGGGAAATTGGCGAAGGTTTGGAACACTTCTTCC
GGCCCGGTTCTGTTACGCCCACTACCCTGACTCCCCTAGTTTCTCCAACG
TCGGAGGAATGCAGCTCCTTGTCGTTTGTGGACAGTCCCACGATGAGCCG
CGATGGGAATGGACATATGACCTCCGAGGAGACCACTCCCATTCTGGAGG
AACGCCGACCAATTAAATTGGAGCGCCAGTCGCCATTGCTCAAAAGTGCG
TCATGGGCCACCCGCTCCCGGTCCACGGACAATCTAGAGAAGTATTCGCC
ACTGGTGGGTCGTAAGTCCCCGCTGGTCAAGATGCGAACTGAAGGAGGTC
CCGGCTCGGGATCTGCCACCGGTGCTGAGGAGACGTCTATGCCCAGTTCT
AATCTGCTTAAGGCAACCGCCCGAGAGGACAAAACGCGTTCGCCCAGCAG
CGATTCGATCAAAAGCCATGCCGCAGGCGAGGGTAGTGTTATTGTGAAGA
CTGGCAACGGCATCCTGCGAACACCCATAGTTCTGCAGAAGCCGCGTCCG
TGGTCGGTTGTTGGAAGCGAGCCAAAGGCAGGCGGAGATCTTATTACAGG
CAATGGGAATGCCGACTCCAGCAAGACCACGCCGGACAAACTAGAAGAAG
ATGATGTCGAGATAGTGACATTTGGAAATACCTGCAGTGGCTCAATTGTT
GGCATCACGCCGGGCATAGCTTTATCCACCAGTGGCGGTGGAAGCATTGT
GGGCATTACACCAGGAGGTGCCCTTGAAAAGAAGTCTGTGCGAGAACTAG
CAGCGGGTCTAAACAGAATGGAACTCCCCCTAAAGCCGCCCGTTATGCCA
AGAACCCTGCTGAACGCGACTAGTGTCCGCACAAGCACGTCCTCCACAGG
CTCCACCTCCAATAGTGTATCAGTCAGCTCATCCACGAACGCCAACACAT
CGATGACAGTATTAAACCAGAGCCAGACACGATCACGGATCGTAAGCTCG
ACCAGCAGCACTGACAGCACCGAGACCATCACAGAGCGCAGCACCACCAG
CACTAGCAGCAGTTCATCCAGCAGCTACGAGAAGCAGCATGCCAAGGCCT
GTGCCAATTTAATCAGCAACGAAATCCTCAGTATGCGCAACGGACAGTTG
GGCGCCAAGTCTGGAAGCTGCGCAGAAAGTGGTGGTGTGAAGCGGATAGC
CGGCAAGGAGATCTCCACGCTATTCGAGGTTTGAAAGCTTTCTAGACCAT

BS15946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-RA 1968 CG1399-PA 1..1968 17..1984 9840 100 Plus
CG1399-RC 4290 CG1399-PC 2475..4290 169..1984 9080 100 Plus
CG1399-RB 4359 CG1399-PB 2544..4359 169..1984 9080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-RA 3034 CG1399-RA 145..2112 17..1984 9840 100 Plus
CG1399-RC 5968 CG1399-RC 3231..5046 169..1984 9080 100 Plus
CG1399-RB 5468 CG1399-RB 2731..4546 169..1984 9080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7679340..7679930 997..407 2955 100 Minus
2R 25286936 2R 7677992..7678405 1984..1571 2070 100 Minus
2R 25286936 2R 7678868..7679276 1400..992 2030 99.8 Minus
2R 25286936 2R 7681307..7681470 332..169 820 100 Minus
2R 25286936 2R 7681541..7681692 168..17 760 100 Minus
2R 25286936 2R 7678692..7678808 1515..1399 585 100 Minus
2R 25286936 2R 7680924..7680999 407..332 380 100 Minus
2R 25286936 2R 7678570..7678629 1571..1512 300 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:37:28 has no hits.

BS15946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:47 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 1..1968 17..1984 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:57 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 143..2109 17..1983 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:01 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 145..2111 17..1983 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:59 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 143..2109 17..1983 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:02 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 145..2111 17..1983 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:02 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7677993..7678404 1572..1983 100 <- Minus
2R 7678570..7678626 1515..1571 100 <- Minus
2R 7678693..7678806 1401..1514 100 <- Minus
2R 7678868..7679272 996..1400 100 <- Minus
2R 7679342..7679930 407..995 100 <- Minus
2R 7680925..7680999 332..406 100 <- Minus
2R 7681308..7681470 169..331 100 <- Minus
2R 7681541..7681692 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:01 Download gff for BS15946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3565498..3565909 1572..1983 100 <- Minus
arm_2R 3566075..3566131 1515..1571 100 <- Minus
arm_2R 3566198..3566311 1401..1514 100 <- Minus
arm_2R 3566373..3566777 996..1400 100 <- Minus
arm_2R 3566847..3567435 407..995 100 <- Minus
arm_2R 3568430..3568504 332..406 100 <- Minus
arm_2R 3568813..3568975 169..331 100 <- Minus
arm_2R 3569046..3569197 17..168 100   Minus

BS15946.3prime Sequence

805 bp (804 high quality bases) assembled on 2007-04-16

> BS15946.3prime
ATGGTCTAGAAAGCTTTCAACCCTCGAATAGCGTGGAGATCTCCTTGCCG
GCTATCCGCTTCACACCACCACTTTCTGCGCAGCTTCCAGACTTGGCGCC
CAACTGTCCGTTGCGCATACTGAGGATTTCGTTGCTGATTAAATTGGCAC
AGGCCTTGGCATGCTGCTTCTCGTAGCTGCTGGATGAACTGCTGCTAGTG
CTGGTGGTGCTGCGCTCTGTGATGGTCTCGGTGCTGTCAGTGCTGCTGGT
CGAGCTTACGATCCGTGATCGTGTCTGGCTCTGGTTTAATACTGTCATCG
ATGTGTTGGCGTTCGTGGATGAGCTGACTGATACACTATTGGAGGTGGAG
CCTGTGGAGGACGTGCTTGTGCGGACACTAGTCGCGTTCAGCAGGGTTCT
TGGCATAACGGGCGGCTTTAGGGGGAGTTCCATTCTGTTTAGACCCGCTG
CTAGTTCTCGCACAGACTTCTTTTCAAGGGCACCTCCTGGTGTAATGCCC
ACAATGCTTCCACCGCCACTGGTGGATAAAGCTATGCCCGGCGTGATGCC
AACAATTGAGCCACTGCAGGTATTTCCAAATGTCACTATCTCGACATCAT
CTTCTTCTAGTTTGTCCGGCGTGGTCTTGCTGGAGTCGGCATTCCCATTG
CCTGTAATAAGATCTCCGCCTGCCTTTGGCTCGCTTCCAACAACCGACCA
CGGACGCGGCTTCTGCAGAACTATGGGTGTTCGCAGGATGCCGTTGCCAG
TCTTCACAATAACACTACCCTCGCCTGCGGCATGGCTTTTGATCGAATCG
CTGCT

BS15946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-PB 4200 CG1399-RB 3412..4195 805..22 3920 100 Minus
CG1399-PA 1968 CG1399-RA 1180..1963 805..22 3920 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-RC 5968 CG1399-RC 4258..5046 805..17 3930 99.9 Minus
CG1399-RA 3034 CG1399-RA 1324..2112 805..17 3930 99.9 Minus
CG1399-RB 5468 CG1399-RB 3758..4546 805..17 3930 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7677992..7678405 17..430 2055 99.8 Plus
2R 25286936 2R 7678868..7679072 601..805 1025 100 Plus
2R 25286936 2R 7678692..7678808 486..602 585 100 Plus
2R 25286936 2R 7678570..7678629 430..489 300 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:54:45 has no hits.

BS15946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:35 Download gff for BS15946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1399-PA 1180..1968 17..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:09 Download gff for BS15946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1399-RB 3758..4549 12..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:07 Download gff for BS15946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1399-RB 3758..4549 12..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:07 Download gff for BS15946.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7678868..7679072 601..805 100   Plus
2R 7677989..7678404 12..429 99 <- Plus
2R 7678570..7678626 430..486 100 <- Plus
2R 7678693..7678806 487..600 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:09 Download gff for BS15946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3566198..3566311 487..600 100 <- Plus
arm_2R 3566373..3566577 601..805 100   Plus
arm_2R 3565494..3565909 12..429 99 <- Plus
arm_2R 3566075..3566131 430..486 100 <- Plus

BS15946.5prime Sequence

779 bp (777 high quality bases) assembled on 2007-04-16

> BS15946.5prime
GAAGTTATCCCTCGACATGGGTCTCATGCGCACTTTGTGCTGCTGCTTCG
GTGCAGGGCAGAGTAATCAGTCTTCGGGCGCAAGTCCAGCTTATAAGGCG
TGTCCGGACGAGGAGCCTTTGGAGGAGTTGGTCACAGATCCAGAAAGAGC
GGATCAGTCTCCTAAGAATGAGATCGAACAATCCCTGGCCGCCGCCATCT
CAGACCGTGCTACGGATGAGGTGCTGGAGGCCCTGACCCGCTACCGCCGT
GGCATGGGCATCGCGGAATCGCCATCGGTGCTGCTAGACGAACCGCAGAC
GCCGGACATCGTGCGCAGTCGCTCCAGTCATGATGCGGATGGTTTAATCA
TACGACCGGGTGGACGAGGCTCGATATTGCCCAAACTGGGCTTGGAATCG
CCCACTGCCACACCGCATCTGCCCACCAAGCGACGCAGTCTGGCAAAGAA
AGTGCGTCCCCAGTCCGTGGTGGAGAATCTCAGCCTGGGCCACTTCCCTG
ACCTCCTGGAGTCACCCTCCTCGCACCGATCTAACTCCCAGTTGTCCGCC
CGTGCAGCTGCAGGTGCCGCCGCCTTGGTGGGAGCCGCCAATATGACCGA
CAGCATCGCTGTGGACGACGGAGGAGTGGATGAGTGTTGCGACTCCATCA
CCGAGCTGCCCAGCGCCTCGTTCCAGCTCCAGCATCTGGTCAAAGGACGT
CCGAAGCGGGCCAAAACGCGTGCACCAACTCGGCCGTTGGTCACCACCGA
GTGCGCCGGGGGCAGCAGGGAAATTGGCG

BS15946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-PA 1968 CG1399-RA 1..763 17..779 3815 100 Plus
CG1399-PB 4200 CG1399-RB 2385..2995 169..779 3055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-RA 3034 CG1399-RA 145..907 17..779 3815 100 Plus
CG1399-RG 5298 CG1399-RG 3231..3841 169..779 3055 100 Plus
CG1399-RC 5968 CG1399-RC 3231..3841 169..779 3055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7679558..7679930 779..407 1865 100 Minus
2R 25286936 2R 7681307..7681470 332..169 820 100 Minus
2R 25286936 2R 7681541..7681692 168..17 760 100 Minus
2R 25286936 2R 7680924..7680999 407..332 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:13:17 has no hits.

BS15946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:35 Download gff for BS15946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1399-PA 1..763 17..779 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:50 Download gff for BS15946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 142..907 14..779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:08 Download gff for BS15946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1399-RA 142..907 14..779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:08 Download gff for BS15946.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7679558..7679930 407..779 100 <- Minus
2R 7680925..7680999 332..406 100 <- Minus
2R 7681308..7681470 169..331 100 <- Minus
2R 7681541..7681695 14..168 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:50 Download gff for BS15946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3568813..3568975 169..331 100 <- Minus
arm_2R 3569046..3569200 14..168 99   Minus
arm_2R 3567063..3567435 407..779 100 <- Minus
arm_2R 3568430..3568504 332..406 100 <- Minus

BS15946.pep Sequence

Translation from 16 to 1983

> BS15946.pep
MGLMRTLCCCFGAGQSNQSSGASPAYKACPDEEPLEELVTDPERADQSPK
NEIEQSLAAAISDRATDEVLEALTRYRRGMGIAESPSVLLDEPQTPDIVR
SRSSHDADGLIIRPGGRGSILPKLGLESPTATPHLPTKRRSLAKKVRPQS
VVENLSLGHFPDLLESPSSHRSNSQLSARAAAGAAALVGAANMTDSIAVD
DGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLVTTECAGGS
REIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPTMSRDGNGH
MTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEKYSPLVGRK
SPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRSPSSDSIKS
HAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDLITGNGNAD
SSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGGSIVGITPG
GALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTSSTGSTSNS
VSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERSTTSTSSSS
SSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVKRIAGKEIS
TLFEV*

BS15946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1399-PA 655 CG1399-PA 1..655 1..655 3298 100 Plus
CG1399-PC 1429 CG1399-PC 826..1429 52..655 3020 100 Plus
CG1399-PB 1452 CG1399-PB 849..1452 52..655 3020 100 Plus
CG1399-PF 1486 CG1399-PF 847..1456 52..654 2998 98.9 Plus
CG1399-PG 1296 CG1399-PG 826..1292 52..518 2362 100 Plus