Clone Sequence Records
BS15946.complete Sequence
2000 bp assembled on 2009-12-07
GenBank Submission: KX805722
> BS15946.complete
GAAGTTATCAGTCGACATGGGTCTCATGCGCACTTTGTGCTGCTGCTTCG
GTGCAGGGCAGAGTAATCAGTCTTCGGGCGCAAGTCCAGCTTATAAGGCG
TGTCCGGACGAGGAGCCTTTGGAGGAGTTGGTCACAGATCCAGAAAGAGC
GGATCAGTCTCCTAAGAATGAGATCGAACAATCCCTGGCCGCCGCCATCT
CAGACCGTGCTACGGATGAGGTGCTGGAGGCCCTGACCCGCTACCGCCGT
GGCATGGGCATCGCGGAATCGCCATCGGTGCTGCTAGACGAACCGCAGAC
GCCGGACATCGTGCGCAGTCGCTCCAGTCATGATGCGGATGGTTTAATCA
TACGACCGGGTGGACGAGGCTCGATATTGCCCAAACTGGGCTTGGAATCG
CCCACTGCCACACCGCATCTGCCCACCAAGCGACGCAGTCTGGCAAAGAA
AGTGCGTCCCCAGTCCGTGGTGGAGAATCTCAGCCTGGGCCACTTCCCTG
ACCTCCTGGAGTCACCCTCCTCGCACCGATCTAACTCCCAGTTGTCCGCC
CGTGCAGCTGCAGGTGCCGCCGCCTTGGTGGGAGCCGCCAATATGACCGA
CAGCATCGCTGTGGACGACGGAGGAGTGGATGAGTGTTGCGACTCCATCA
CCGAGCTGCCCAGCGCCTCGTTCCAGCTCCAGCATCTGGTCAAAGGACGT
CCGAAGCGGGCCAAAACGCGTGCACCAACTCGGCCGTTGGTCACCACCGA
GTGCGCCGGGGGCAGCAGGGAAATTGGCGAAGGTTTGGAACACTTCTTCC
GGCCCGGTTCTGTTACGCCCACTACCCTGACTCCCCTAGTTTCTCCAACG
TCGGAGGAATGCAGCTCCTTGTCGTTTGTGGACAGTCCCACGATGAGCCG
CGATGGGAATGGACATATGACCTCCGAGGAGACCACTCCCATTCTGGAGG
AACGCCGACCAATTAAATTGGAGCGCCAGTCGCCATTGCTCAAAAGTGCG
TCATGGGCCACCCGCTCCCGGTCCACGGACAATCTAGAGAAGTATTCGCC
ACTGGTGGGTCGTAAGTCCCCGCTGGTCAAGATGCGAACTGAAGGAGGTC
CCGGCTCGGGATCTGCCACCGGTGCTGAGGAGACGTCTATGCCCAGTTCT
AATCTGCTTAAGGCAACCGCCCGAGAGGACAAAACGCGTTCGCCCAGCAG
CGATTCGATCAAAAGCCATGCCGCAGGCGAGGGTAGTGTTATTGTGAAGA
CTGGCAACGGCATCCTGCGAACACCCATAGTTCTGCAGAAGCCGCGTCCG
TGGTCGGTTGTTGGAAGCGAGCCAAAGGCAGGCGGAGATCTTATTACAGG
CAATGGGAATGCCGACTCCAGCAAGACCACGCCGGACAAACTAGAAGAAG
ATGATGTCGAGATAGTGACATTTGGAAATACCTGCAGTGGCTCAATTGTT
GGCATCACGCCGGGCATAGCTTTATCCACCAGTGGCGGTGGAAGCATTGT
GGGCATTACACCAGGAGGTGCCCTTGAAAAGAAGTCTGTGCGAGAACTAG
CAGCGGGTCTAAACAGAATGGAACTCCCCCTAAAGCCGCCCGTTATGCCA
AGAACCCTGCTGAACGCGACTAGTGTCCGCACAAGCACGTCCTCCACAGG
CTCCACCTCCAATAGTGTATCAGTCAGCTCATCCACGAACGCCAACACAT
CGATGACAGTATTAAACCAGAGCCAGACACGATCACGGATCGTAAGCTCG
ACCAGCAGCACTGACAGCACCGAGACCATCACAGAGCGCAGCACCACCAG
CACTAGCAGCAGTTCATCCAGCAGCTACGAGAAGCAGCATGCCAAGGCCT
GTGCCAATTTAATCAGCAACGAAATCCTCAGTATGCGCAACGGACAGTTG
GGCGCCAAGTCTGGAAGCTGCGCAGAAAGTGGTGGTGTGAAGCGGATAGC
CGGCAAGGAGATCTCCACGCTATTCGAGGTTTGAAAGCTTTCTAGACCAT
BS15946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-RA | 1968 | CG1399-PA | 1..1968 | 17..1984 | 9840 | 100 | Plus |
CG1399-RC | 4290 | CG1399-PC | 2475..4290 | 169..1984 | 9080 | 100 | Plus |
CG1399-RB | 4359 | CG1399-PB | 2544..4359 | 169..1984 | 9080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-RA | 3034 | CG1399-RA | 145..2112 | 17..1984 | 9840 | 100 | Plus |
CG1399-RC | 5968 | CG1399-RC | 3231..5046 | 169..1984 | 9080 | 100 | Plus |
CG1399-RB | 5468 | CG1399-RB | 2731..4546 | 169..1984 | 9080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7679340..7679930 | 997..407 | 2955 | 100 | Minus |
2R | 25286936 | 2R | 7677992..7678405 | 1984..1571 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 7678868..7679276 | 1400..992 | 2030 | 99.8 | Minus |
2R | 25286936 | 2R | 7681307..7681470 | 332..169 | 820 | 100 | Minus |
2R | 25286936 | 2R | 7681541..7681692 | 168..17 | 760 | 100 | Minus |
2R | 25286936 | 2R | 7678692..7678808 | 1515..1399 | 585 | 100 | Minus |
2R | 25286936 | 2R | 7680924..7680999 | 407..332 | 380 | 100 | Minus |
2R | 25286936 | 2R | 7678570..7678629 | 1571..1512 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:37:28 has no hits.
BS15946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:17:47 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 1..1968 | 17..1984 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:57 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 143..2109 | 17..1983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:01 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 145..2111 | 17..1983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:59 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 143..2109 | 17..1983 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:02 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 145..2111 | 17..1983 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:02 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7677993..7678404 | 1572..1983 | 100 | <- | Minus |
2R | 7678570..7678626 | 1515..1571 | 100 | <- | Minus |
2R | 7678693..7678806 | 1401..1514 | 100 | <- | Minus |
2R | 7678868..7679272 | 996..1400 | 100 | <- | Minus |
2R | 7679342..7679930 | 407..995 | 100 | <- | Minus |
2R | 7680925..7680999 | 332..406 | 100 | <- | Minus |
2R | 7681308..7681470 | 169..331 | 100 | <- | Minus |
2R | 7681541..7681692 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:01 Download gff for
BS15946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3565498..3565909 | 1572..1983 | 100 | <- | Minus |
arm_2R | 3566075..3566131 | 1515..1571 | 100 | <- | Minus |
arm_2R | 3566198..3566311 | 1401..1514 | 100 | <- | Minus |
arm_2R | 3566373..3566777 | 996..1400 | 100 | <- | Minus |
arm_2R | 3566847..3567435 | 407..995 | 100 | <- | Minus |
arm_2R | 3568430..3568504 | 332..406 | 100 | <- | Minus |
arm_2R | 3568813..3568975 | 169..331 | 100 | <- | Minus |
arm_2R | 3569046..3569197 | 17..168 | 100 | | Minus |
BS15946.3prime Sequence
805 bp (804 high quality bases) assembled on 2007-04-16
> BS15946.3prime
ATGGTCTAGAAAGCTTTCAACCCTCGAATAGCGTGGAGATCTCCTTGCCG
GCTATCCGCTTCACACCACCACTTTCTGCGCAGCTTCCAGACTTGGCGCC
CAACTGTCCGTTGCGCATACTGAGGATTTCGTTGCTGATTAAATTGGCAC
AGGCCTTGGCATGCTGCTTCTCGTAGCTGCTGGATGAACTGCTGCTAGTG
CTGGTGGTGCTGCGCTCTGTGATGGTCTCGGTGCTGTCAGTGCTGCTGGT
CGAGCTTACGATCCGTGATCGTGTCTGGCTCTGGTTTAATACTGTCATCG
ATGTGTTGGCGTTCGTGGATGAGCTGACTGATACACTATTGGAGGTGGAG
CCTGTGGAGGACGTGCTTGTGCGGACACTAGTCGCGTTCAGCAGGGTTCT
TGGCATAACGGGCGGCTTTAGGGGGAGTTCCATTCTGTTTAGACCCGCTG
CTAGTTCTCGCACAGACTTCTTTTCAAGGGCACCTCCTGGTGTAATGCCC
ACAATGCTTCCACCGCCACTGGTGGATAAAGCTATGCCCGGCGTGATGCC
AACAATTGAGCCACTGCAGGTATTTCCAAATGTCACTATCTCGACATCAT
CTTCTTCTAGTTTGTCCGGCGTGGTCTTGCTGGAGTCGGCATTCCCATTG
CCTGTAATAAGATCTCCGCCTGCCTTTGGCTCGCTTCCAACAACCGACCA
CGGACGCGGCTTCTGCAGAACTATGGGTGTTCGCAGGATGCCGTTGCCAG
TCTTCACAATAACACTACCCTCGCCTGCGGCATGGCTTTTGATCGAATCG
CTGCT
BS15946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-PB | 4200 | CG1399-RB | 3412..4195 | 805..22 | 3920 | 100 | Minus |
CG1399-PA | 1968 | CG1399-RA | 1180..1963 | 805..22 | 3920 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-RC | 5968 | CG1399-RC | 4258..5046 | 805..17 | 3930 | 99.9 | Minus |
CG1399-RA | 3034 | CG1399-RA | 1324..2112 | 805..17 | 3930 | 99.9 | Minus |
CG1399-RB | 5468 | CG1399-RB | 3758..4546 | 805..17 | 3930 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7677992..7678405 | 17..430 | 2055 | 99.8 | Plus |
2R | 25286936 | 2R | 7678868..7679072 | 601..805 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 7678692..7678808 | 486..602 | 585 | 100 | Plus |
2R | 25286936 | 2R | 7678570..7678629 | 430..489 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:54:45 has no hits.
BS15946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:35 Download gff for
BS15946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-PA | 1180..1968 | 17..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:43:09 Download gff for
BS15946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RB | 3758..4549 | 12..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:07 Download gff for
BS15946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RB | 3758..4549 | 12..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:07 Download gff for
BS15946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7678868..7679072 | 601..805 | 100 | | Plus |
2R | 7677989..7678404 | 12..429 | 99 | <- | Plus |
2R | 7678570..7678626 | 430..486 | 100 | <- | Plus |
2R | 7678693..7678806 | 487..600 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:43:09 Download gff for
BS15946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3566198..3566311 | 487..600 | 100 | <- | Plus |
arm_2R | 3566373..3566577 | 601..805 | 100 | | Plus |
arm_2R | 3565494..3565909 | 12..429 | 99 | <- | Plus |
arm_2R | 3566075..3566131 | 430..486 | 100 | <- | Plus |
BS15946.5prime Sequence
779 bp (777 high quality bases) assembled on 2007-04-16
> BS15946.5prime
GAAGTTATCCCTCGACATGGGTCTCATGCGCACTTTGTGCTGCTGCTTCG
GTGCAGGGCAGAGTAATCAGTCTTCGGGCGCAAGTCCAGCTTATAAGGCG
TGTCCGGACGAGGAGCCTTTGGAGGAGTTGGTCACAGATCCAGAAAGAGC
GGATCAGTCTCCTAAGAATGAGATCGAACAATCCCTGGCCGCCGCCATCT
CAGACCGTGCTACGGATGAGGTGCTGGAGGCCCTGACCCGCTACCGCCGT
GGCATGGGCATCGCGGAATCGCCATCGGTGCTGCTAGACGAACCGCAGAC
GCCGGACATCGTGCGCAGTCGCTCCAGTCATGATGCGGATGGTTTAATCA
TACGACCGGGTGGACGAGGCTCGATATTGCCCAAACTGGGCTTGGAATCG
CCCACTGCCACACCGCATCTGCCCACCAAGCGACGCAGTCTGGCAAAGAA
AGTGCGTCCCCAGTCCGTGGTGGAGAATCTCAGCCTGGGCCACTTCCCTG
ACCTCCTGGAGTCACCCTCCTCGCACCGATCTAACTCCCAGTTGTCCGCC
CGTGCAGCTGCAGGTGCCGCCGCCTTGGTGGGAGCCGCCAATATGACCGA
CAGCATCGCTGTGGACGACGGAGGAGTGGATGAGTGTTGCGACTCCATCA
CCGAGCTGCCCAGCGCCTCGTTCCAGCTCCAGCATCTGGTCAAAGGACGT
CCGAAGCGGGCCAAAACGCGTGCACCAACTCGGCCGTTGGTCACCACCGA
GTGCGCCGGGGGCAGCAGGGAAATTGGCG
BS15946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:08:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-PA | 1968 | CG1399-RA | 1..763 | 17..779 | 3815 | 100 | Plus |
CG1399-PB | 4200 | CG1399-RB | 2385..2995 | 169..779 | 3055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-RA | 3034 | CG1399-RA | 145..907 | 17..779 | 3815 | 100 | Plus |
CG1399-RG | 5298 | CG1399-RG | 3231..3841 | 169..779 | 3055 | 100 | Plus |
CG1399-RC | 5968 | CG1399-RC | 3231..3841 | 169..779 | 3055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7679558..7679930 | 779..407 | 1865 | 100 | Minus |
2R | 25286936 | 2R | 7681307..7681470 | 332..169 | 820 | 100 | Minus |
2R | 25286936 | 2R | 7681541..7681692 | 168..17 | 760 | 100 | Minus |
2R | 25286936 | 2R | 7680924..7680999 | 407..332 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:13:17 has no hits.
BS15946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:35 Download gff for
BS15946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-PA | 1..763 | 17..779 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:50 Download gff for
BS15946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 142..907 | 14..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:08 Download gff for
BS15946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1399-RA | 142..907 | 14..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:08 Download gff for
BS15946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7679558..7679930 | 407..779 | 100 | <- | Minus |
2R | 7680925..7680999 | 332..406 | 100 | <- | Minus |
2R | 7681308..7681470 | 169..331 | 100 | <- | Minus |
2R | 7681541..7681695 | 14..168 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:50 Download gff for
BS15946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3568813..3568975 | 169..331 | 100 | <- | Minus |
arm_2R | 3569046..3569200 | 14..168 | 99 | | Minus |
arm_2R | 3567063..3567435 | 407..779 | 100 | <- | Minus |
arm_2R | 3568430..3568504 | 332..406 | 100 | <- | Minus |
BS15946.pep Sequence
Translation from 16 to 1983
> BS15946.pep
MGLMRTLCCCFGAGQSNQSSGASPAYKACPDEEPLEELVTDPERADQSPK
NEIEQSLAAAISDRATDEVLEALTRYRRGMGIAESPSVLLDEPQTPDIVR
SRSSHDADGLIIRPGGRGSILPKLGLESPTATPHLPTKRRSLAKKVRPQS
VVENLSLGHFPDLLESPSSHRSNSQLSARAAAGAAALVGAANMTDSIAVD
DGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLVTTECAGGS
REIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPTMSRDGNGH
MTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEKYSPLVGRK
SPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRSPSSDSIKS
HAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDLITGNGNAD
SSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGGSIVGITPG
GALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTSSTGSTSNS
VSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERSTTSTSSSS
SSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVKRIAGKEIS
TLFEV*
BS15946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1399-PA | 655 | CG1399-PA | 1..655 | 1..655 | 3298 | 100 | Plus |
CG1399-PC | 1429 | CG1399-PC | 826..1429 | 52..655 | 3020 | 100 | Plus |
CG1399-PB | 1452 | CG1399-PB | 849..1452 | 52..655 | 3020 | 100 | Plus |
CG1399-PF | 1486 | CG1399-PF | 847..1456 | 52..654 | 2998 | 98.9 | Plus |
CG1399-PG | 1296 | CG1399-PG | 826..1292 | 52..518 | 2362 | 100 | Plus |