Clone BS15950 Report

Search the DGRC for BS15950

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:159
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG1316-RA
Protein status:BS15950.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS15950.3prime Sequence

881 bp (803 high quality bases) assembled on 2007-04-16

> BS15950.3prime
ATGGTCTAGAAAGCTTTCAGTTCCGTCTCAATCGCTTGCGACCGCCATCA
TCGCCGTCGGAGCCACTTCGCTCCTCAGCCTCCATGACCTTGATTTTGGT
GCCGCAAATTTCGGCTCCGTTTAGGGTACGAATGGCCAATTGAGCACTCT
CAACCTCCGCATACTTGACGTAGCCACAGTTCTTGTTGGGCAGAAGGTAG
ACGTCGATCAGTCCCGACCAGCAAGAGAATATGTTCTTCAATATCGAATG
CGGCAAGTTCGCTGAGAGCACAATGAACAGTCGTTGGGCCACCTGGTCGT
CCGGCGATGCCAGTGGCTGAGTTGGGGGCAAGGGAACATTGCAGATGGCA
TCCTTTTTGGTTCGCTTGTCTATGAAGGATGTGTCCATGCGAGCTGAGCT
CATTCCATTGACTTTGACAATGATGCGTTCGCCCATTGGGTACTCCAGGC
CATGAAGTTTGTCCTTGGCATAAATGGCGGCTTCTGGGTTGTCGTACACC
ACTAAGGCCTCATTGGTGCGCGGTCCATGTTCGCGCATGATTTGGCAGTA
ATCCAAGCCGGGAATTATGTCGAAGAGACGCCAGAGCTGATCCTGGTTGA
CGCAGTTGCTCACGTTAACCTCCAGACAGGATGGCTGGGCCACTGGCACA
TTCTGCATGCGCAGGAAGGCCGCCATGTCGTTGTTCTGCGATACATTCCA
GTCGTTGTTGTAGCTGTTGCTGCCGCCGCCACCGCTGCTGCTACCGCCTC
CATTGAAATTGGAATTGCCACGTCCCGAGCTGCTATACAAGGGATTGTCC
TCGGAGGGACGGCCGTACTGGTCACGCTGTGTGCGTGTAGAACCCTTTGG
CTCGGCAAAGACAGCTTTATACTTGGCGGAG

BS15950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-PA 1413 CG1316-RA 549..1413 881..17 4325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-RA 2222 CG1316-RA 662..1526 881..17 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4284638..4284990 881..529 1765 100 Minus
3L 28110227 3L 4285598..4285771 260..87 870 100 Minus
3L 28110227 3L 4285425..4285531 366..260 535 100 Minus
3L 28110227 3L 4285175..4285272 464..367 490 100 Minus
3L 28110227 3L 4285845..4285918 90..17 370 100 Minus
3L 28110227 3L 4285053..4285117 528..464 325 100 Minus
Blast to na_te.dros performed 2015-02-12 10:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1084..1159 747..675 137 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6696..6780 779..697 132 63.5 Minus
roo 9092 roo DM_ROO 9092bp 1116..1157 742..701 120 76.2 Minus
roo 9092 roo DM_ROO 9092bp 1105..1151 747..701 118 72.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6766 743..696 114 70.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2346 755..704 113 71.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2407 742..676 110 62.7 Minus

BS15950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:37 Download gff for BS15950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-PA 549..1413 17..881 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:52 Download gff for BS15950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 662..1526 17..881 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:17 Download gff for BS15950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 662..1526 17..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:17 Download gff for BS15950.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4284638..4284990 529..881 100 -> Minus
3L 4285053..4285116 465..528 100 -> Minus
3L 4285175..4285272 367..464 100 -> Minus
3L 4285425..4285531 260..366 100 -> Minus
3L 4285599..4285769 89..259 100 -> Minus
3L 4285847..4285918 17..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:52 Download gff for BS15950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4284638..4284990 529..881 100 -> Minus
arm_3L 4285053..4285116 465..528 100 -> Minus
arm_3L 4285175..4285272 367..464 100 -> Minus
arm_3L 4285425..4285531 260..366 100 -> Minus
arm_3L 4285599..4285769 89..259 100 -> Minus
arm_3L 4285847..4285918 17..88 100   Minus

BS15950.5prime Sequence

846 bp (758 high quality bases) assembled on 2007-04-16

> BS15950.5prime
GAAGTTATCAGTCGACATGTCGGACTATAGATCGCAATCGCGCAGTGGCG
GGGGGCGTGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCG
CGTCTCTTCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGA
AGCCTTCTCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACA
AGCACACCCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACA
TCCGATGCTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAA
GATGGATCGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCT
CAAATAAGTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTG
ATCCCCAAAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTG
GGGCGATGTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATC
CCAAGGGCTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTG
GCTTTCGAAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAA
GGGTTCTACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACA
ATCCCTTGTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGC
GGTAGCAGCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAA
TGTATCGCAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGC
CAGTGGCCCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGT

BS15950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-PA 1413 CG1316-RA 1..830 17..846 4125 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-RA 2222 CG1316-RA 113..943 16..846 4140 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4283963..4284283 16..336 1590 99.7 Plus
3L 28110227 3L 4284605..4284919 532..846 1575 100 Plus
3L 28110227 3L 4284343..4284543 333..533 990 99.5 Plus
Blast to na_te.dros performed 2015-02-13 13:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1084..1159 699..771 137 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6696..6780 667..749 132 63.5 Plus
roo 9092 roo DM_ROO 9092bp 1116..1157 704..745 120 76.2 Plus
roo 9092 roo DM_ROO 9092bp 1105..1151 699..745 118 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6766 703..750 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2346 691..742 113 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2407 704..770 110 62.7 Plus

BS15950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:37 Download gff for BS15950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-PA 1..830 17..846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:08 Download gff for BS15950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 105..943 7..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:38 Download gff for BS15950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 105..943 7..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:25:38 Download gff for BS15950.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4283955..4284283 7..336 98 -> Plus
3L 4284347..4284541 337..531 100 -> Plus
3L 4284605..4284919 532..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:08 Download gff for BS15950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4283955..4284283 7..336 98 -> Plus
arm_3L 4284347..4284541 337..531 100 -> Plus
arm_3L 4284605..4284919 532..846 100   Plus

BS15950.complete Sequence

1445 bp assembled on 2007-05-07

GenBank Submission: FJ637991

> BS15950.complete
GAAGTTATCAGTCGACATGTCGGACTATAGATCGCAATCGCGCAGTGGCG
GGGGGCGTGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCG
CGTCTCTTCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGA
AGCCTTCTCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACA
AGCACACCCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACA
TCCGATGCTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAA
GATGGATCGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCT
CAAATAAGTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTG
ATCCCCAAAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTG
GGGCGATGTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATC
CCAAGGGCTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTG
GCTTTCGAAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAA
GGGTTCTACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACA
ATCCCTTGTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGC
GGTAGCAGCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAA
TGTATCGCAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGC
CAGTGGCCCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAAC
CAGGATCAGCTCTGGCGTCTCTTCGACATAATTCCCGGCTTGGATTACTG
CCAAATCATGCGCGAACATGGACCGCGCACCAATGAGGCCTTAGTGGTGT
ACGACAACCCAGAAGCCGCCATTTATGCCAAGGACAAACTTCATGGCCTG
GAGTACCCAATGGGCGAACGCATCATTGTCAAAGTCAATGGAATGAGCTC
AGCTCGCATGGACACATCCTTCATAGACAAGCGAACCAAAAAGGATGCCA
TCTGCAATGTTCCCTTGCCCCCAACTCAGCCACTGGCATCGCCGGACGAC
CAGGTGGCCCAACGACTGTTCATTGTGCTCTCAGCGAACTTGCCGCATTC
GATATTGAAGAACATATTCTCTTGCTGGTCGGGACTGATCGACGTCTACC
TTCTGCCCAACAAGAACTGTGGCTACGTCAAGTATGCGGAGGTTGAGAGT
GCTCAATTGGCCATTCGTACCCTAAACGGAGCCGAAATTTGCGGCACCAA
AATCAAGGTCATGGAGGCTGAGGAGCGAAGTGGCTCCGACGGCGATGATG
GCGGTCGCAAGCGATTGAGACGGAACTGAAAGCTTTCTAGACCAT

BS15950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-RA 1413 CG1316-PA 1..1413 17..1429 7050 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-RA 2222 CG1316-RA 113..1526 16..1429 7055 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4284605..4284990 532..917 1930 100 Plus
3L 28110227 3L 4283963..4284283 16..336 1590 99.7 Plus
3L 28110227 3L 4284343..4284543 333..533 990 99.5 Plus
3L 28110227 3L 4285598..4285771 1186..1359 870 100 Plus
3L 28110227 3L 4285425..4285531 1080..1186 535 100 Plus
3L 28110227 3L 4285175..4285272 982..1079 490 100 Plus
3L 28110227 3L 4285845..4285918 1356..1429 370 100 Plus
3L 28110227 3L 4285053..4285117 918..982 325 100 Plus
Blast to na_te.dros performed 2014-11-27 08:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6696..6780 667..749 132 63.5 Plus
roo 9092 roo DM_ROO 9092bp 1116..1157 704..745 120 76.2 Plus
roo 9092 roo DM_ROO 9092bp 1105..1151 699..745 118 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6766 703..750 114 70.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2346 691..742 113 71.2 Plus

BS15950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:39 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 1..1413 17..1429 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:41 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 101..1522 7..1429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:35 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 114..1525 17..1428 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:40 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 101..1522 7..1429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:05 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
CG1316-RA 114..1525 17..1428 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:05 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4283964..4284283 17..336 99 -> Plus
3L 4284347..4284541 337..531 100 -> Plus
3L 4284605..4284990 532..917 100 -> Plus
3L 4285053..4285116 918..981 100 -> Plus
3L 4285175..4285272 982..1079 100 -> Plus
3L 4285425..4285531 1080..1186 100 -> Plus
3L 4285599..4285769 1187..1357 100 -> Plus
3L 4285847..4285917 1358..1428 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:35 Download gff for BS15950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4283964..4284283 17..336 99 -> Plus
arm_3L 4284347..4284541 337..531 100 -> Plus
arm_3L 4284605..4284990 532..917 100 -> Plus
arm_3L 4285053..4285116 918..981 100 -> Plus
arm_3L 4285175..4285272 982..1079 100 -> Plus
arm_3L 4285425..4285531 1080..1186 100 -> Plus
arm_3L 4285599..4285769 1187..1357 100 -> Plus
arm_3L 4285847..4285917 1358..1428 100   Plus

BS15950.pep Sequence

Translation from 16 to 1428

> BS15950.pep
MSDYRSQSRSGGGRGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPY
GEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTL
KVLVAANRNQGSNKSENEQEKYVRLFIVIPKTATEEDIREEFSQWGDVES
VTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRT
QRDQYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQNN
DMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMRE
HGPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGERIIVKVNGMSSARMDT
SFIDKRTKKDAICNVPLPPTQPLASPDDQVAQRLFIVLSANLPHSILKNI
FSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKVME
AEERSGSDGDDGGRKRLRRN*

BS15950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1316-PA 470 CG1316-PA 1..470 1..470 2480 100 Plus
Hrb98DE-PF 361 CG9983-PF 5..242 6..244 197 23.9 Plus
Hrb98DE-PD 361 CG9983-PD 5..242 6..244 197 23.9 Plus
Rbp9-PH 439 CG3151-PH 103..427 20..337 196 21.9 Plus
Rbp9-PG 439 CG3151-PG 103..427 20..337 196 21.9 Plus