Clone Sequence Records
BS15950.3prime Sequence
881 bp (803 high quality bases) assembled on 2007-04-16
> BS15950.3prime
ATGGTCTAGAAAGCTTTCAGTTCCGTCTCAATCGCTTGCGACCGCCATCA
TCGCCGTCGGAGCCACTTCGCTCCTCAGCCTCCATGACCTTGATTTTGGT
GCCGCAAATTTCGGCTCCGTTTAGGGTACGAATGGCCAATTGAGCACTCT
CAACCTCCGCATACTTGACGTAGCCACAGTTCTTGTTGGGCAGAAGGTAG
ACGTCGATCAGTCCCGACCAGCAAGAGAATATGTTCTTCAATATCGAATG
CGGCAAGTTCGCTGAGAGCACAATGAACAGTCGTTGGGCCACCTGGTCGT
CCGGCGATGCCAGTGGCTGAGTTGGGGGCAAGGGAACATTGCAGATGGCA
TCCTTTTTGGTTCGCTTGTCTATGAAGGATGTGTCCATGCGAGCTGAGCT
CATTCCATTGACTTTGACAATGATGCGTTCGCCCATTGGGTACTCCAGGC
CATGAAGTTTGTCCTTGGCATAAATGGCGGCTTCTGGGTTGTCGTACACC
ACTAAGGCCTCATTGGTGCGCGGTCCATGTTCGCGCATGATTTGGCAGTA
ATCCAAGCCGGGAATTATGTCGAAGAGACGCCAGAGCTGATCCTGGTTGA
CGCAGTTGCTCACGTTAACCTCCAGACAGGATGGCTGGGCCACTGGCACA
TTCTGCATGCGCAGGAAGGCCGCCATGTCGTTGTTCTGCGATACATTCCA
GTCGTTGTTGTAGCTGTTGCTGCCGCCGCCACCGCTGCTGCTACCGCCTC
CATTGAAATTGGAATTGCCACGTCCCGAGCTGCTATACAAGGGATTGTCC
TCGGAGGGACGGCCGTACTGGTCACGCTGTGTGCGTGTAGAACCCTTTGG
CTCGGCAAAGACAGCTTTATACTTGGCGGAG
BS15950.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-PA | 1413 | CG1316-RA | 549..1413 | 881..17 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:13:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-RA | 2222 | CG1316-RA | 662..1526 | 881..17 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:13:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4284638..4284990 | 881..529 | 1765 | 100 | Minus |
3L | 28110227 | 3L | 4285598..4285771 | 260..87 | 870 | 100 | Minus |
3L | 28110227 | 3L | 4285425..4285531 | 366..260 | 535 | 100 | Minus |
3L | 28110227 | 3L | 4285175..4285272 | 464..367 | 490 | 100 | Minus |
3L | 28110227 | 3L | 4285845..4285918 | 90..17 | 370 | 100 | Minus |
3L | 28110227 | 3L | 4285053..4285117 | 528..464 | 325 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1084..1159 | 747..675 | 137 | 69.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 779..697 | 132 | 63.5 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 742..701 | 120 | 76.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 747..701 | 118 | 72.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 743..696 | 114 | 70.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 755..704 | 113 | 71.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2407 | 742..676 | 110 | 62.7 | Minus |
BS15950.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:37 Download gff for
BS15950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-PA | 549..1413 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:43:52 Download gff for
BS15950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 662..1526 | 17..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:17 Download gff for
BS15950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 662..1526 | 17..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:17 Download gff for
BS15950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4284638..4284990 | 529..881 | 100 | -> | Minus |
3L | 4285053..4285116 | 465..528 | 100 | -> | Minus |
3L | 4285175..4285272 | 367..464 | 100 | -> | Minus |
3L | 4285425..4285531 | 260..366 | 100 | -> | Minus |
3L | 4285599..4285769 | 89..259 | 100 | -> | Minus |
3L | 4285847..4285918 | 17..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:43:52 Download gff for
BS15950.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4284638..4284990 | 529..881 | 100 | -> | Minus |
arm_3L | 4285053..4285116 | 465..528 | 100 | -> | Minus |
arm_3L | 4285175..4285272 | 367..464 | 100 | -> | Minus |
arm_3L | 4285425..4285531 | 260..366 | 100 | -> | Minus |
arm_3L | 4285599..4285769 | 89..259 | 100 | -> | Minus |
arm_3L | 4285847..4285918 | 17..88 | 100 | | Minus |
BS15950.5prime Sequence
846 bp (758 high quality bases) assembled on 2007-04-16
> BS15950.5prime
GAAGTTATCAGTCGACATGTCGGACTATAGATCGCAATCGCGCAGTGGCG
GGGGGCGTGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCG
CGTCTCTTCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGA
AGCCTTCTCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACA
AGCACACCCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACA
TCCGATGCTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAA
GATGGATCGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCT
CAAATAAGTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTG
ATCCCCAAAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTG
GGGCGATGTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATC
CCAAGGGCTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTG
GCTTTCGAAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAA
GGGTTCTACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACA
ATCCCTTGTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGC
GGTAGCAGCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAA
TGTATCGCAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGC
CAGTGGCCCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGT
BS15950.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-PA | 1413 | CG1316-RA | 1..830 | 17..846 | 4125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-RA | 2222 | CG1316-RA | 113..943 | 16..846 | 4140 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4283963..4284283 | 16..336 | 1590 | 99.7 | Plus |
3L | 28110227 | 3L | 4284605..4284919 | 532..846 | 1575 | 100 | Plus |
3L | 28110227 | 3L | 4284343..4284543 | 333..533 | 990 | 99.5 | Plus |
Blast to na_te.dros performed 2015-02-13 13:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1084..1159 | 699..771 | 137 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 667..749 | 132 | 63.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 704..745 | 120 | 76.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 699..745 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 703..750 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 691..742 | 113 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2407 | 704..770 | 110 | 62.7 | Plus |
BS15950.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:37 Download gff for
BS15950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-PA | 1..830 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:53:08 Download gff for
BS15950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 105..943 | 7..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:38 Download gff for
BS15950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 105..943 | 7..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:25:38 Download gff for
BS15950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4283955..4284283 | 7..336 | 98 | -> | Plus |
3L | 4284347..4284541 | 337..531 | 100 | -> | Plus |
3L | 4284605..4284919 | 532..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:53:08 Download gff for
BS15950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4283955..4284283 | 7..336 | 98 | -> | Plus |
arm_3L | 4284347..4284541 | 337..531 | 100 | -> | Plus |
arm_3L | 4284605..4284919 | 532..846 | 100 | | Plus |
BS15950.complete Sequence
1445 bp assembled on 2007-05-07
GenBank Submission: FJ637991
> BS15950.complete
GAAGTTATCAGTCGACATGTCGGACTATAGATCGCAATCGCGCAGTGGCG
GGGGGCGTGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCG
CGTCTCTTCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGA
AGCCTTCTCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACA
AGCACACCCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACA
TCCGATGCTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAA
GATGGATCGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCT
CAAATAAGTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTG
ATCCCCAAAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTG
GGGCGATGTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATC
CCAAGGGCTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTG
GCTTTCGAAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAA
GGGTTCTACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACA
ATCCCTTGTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGC
GGTAGCAGCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAA
TGTATCGCAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGC
CAGTGGCCCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAAC
CAGGATCAGCTCTGGCGTCTCTTCGACATAATTCCCGGCTTGGATTACTG
CCAAATCATGCGCGAACATGGACCGCGCACCAATGAGGCCTTAGTGGTGT
ACGACAACCCAGAAGCCGCCATTTATGCCAAGGACAAACTTCATGGCCTG
GAGTACCCAATGGGCGAACGCATCATTGTCAAAGTCAATGGAATGAGCTC
AGCTCGCATGGACACATCCTTCATAGACAAGCGAACCAAAAAGGATGCCA
TCTGCAATGTTCCCTTGCCCCCAACTCAGCCACTGGCATCGCCGGACGAC
CAGGTGGCCCAACGACTGTTCATTGTGCTCTCAGCGAACTTGCCGCATTC
GATATTGAAGAACATATTCTCTTGCTGGTCGGGACTGATCGACGTCTACC
TTCTGCCCAACAAGAACTGTGGCTACGTCAAGTATGCGGAGGTTGAGAGT
GCTCAATTGGCCATTCGTACCCTAAACGGAGCCGAAATTTGCGGCACCAA
AATCAAGGTCATGGAGGCTGAGGAGCGAAGTGGCTCCGACGGCGATGATG
GCGGTCGCAAGCGATTGAGACGGAACTGAAAGCTTTCTAGACCAT
BS15950.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-RA | 1413 | CG1316-PA | 1..1413 | 17..1429 | 7050 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-RA | 2222 | CG1316-RA | 113..1526 | 16..1429 | 7055 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4284605..4284990 | 532..917 | 1930 | 100 | Plus |
3L | 28110227 | 3L | 4283963..4284283 | 16..336 | 1590 | 99.7 | Plus |
3L | 28110227 | 3L | 4284343..4284543 | 333..533 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 4285598..4285771 | 1186..1359 | 870 | 100 | Plus |
3L | 28110227 | 3L | 4285425..4285531 | 1080..1186 | 535 | 100 | Plus |
3L | 28110227 | 3L | 4285175..4285272 | 982..1079 | 490 | 100 | Plus |
3L | 28110227 | 3L | 4285845..4285918 | 1356..1429 | 370 | 100 | Plus |
3L | 28110227 | 3L | 4285053..4285117 | 918..982 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 667..749 | 132 | 63.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 704..745 | 120 | 76.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 699..745 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 703..750 | 114 | 70.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 691..742 | 113 | 71.2 | Plus |
BS15950.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:39 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 1..1413 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:41 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 101..1522 | 7..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:03:35 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 114..1525 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:40 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 101..1522 | 7..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:30:05 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1316-RA | 114..1525 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:30:05 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4283964..4284283 | 17..336 | 99 | -> | Plus |
3L | 4284347..4284541 | 337..531 | 100 | -> | Plus |
3L | 4284605..4284990 | 532..917 | 100 | -> | Plus |
3L | 4285053..4285116 | 918..981 | 100 | -> | Plus |
3L | 4285175..4285272 | 982..1079 | 100 | -> | Plus |
3L | 4285425..4285531 | 1080..1186 | 100 | -> | Plus |
3L | 4285599..4285769 | 1187..1357 | 100 | -> | Plus |
3L | 4285847..4285917 | 1358..1428 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:03:35 Download gff for
BS15950.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4283964..4284283 | 17..336 | 99 | -> | Plus |
arm_3L | 4284347..4284541 | 337..531 | 100 | -> | Plus |
arm_3L | 4284605..4284990 | 532..917 | 100 | -> | Plus |
arm_3L | 4285053..4285116 | 918..981 | 100 | -> | Plus |
arm_3L | 4285175..4285272 | 982..1079 | 100 | -> | Plus |
arm_3L | 4285425..4285531 | 1080..1186 | 100 | -> | Plus |
arm_3L | 4285599..4285769 | 1187..1357 | 100 | -> | Plus |
arm_3L | 4285847..4285917 | 1358..1428 | 100 | | Plus |
BS15950.pep Sequence
Translation from 16 to 1428
> BS15950.pep
MSDYRSQSRSGGGRGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPY
GEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTL
KVLVAANRNQGSNKSENEQEKYVRLFIVIPKTATEEDIREEFSQWGDVES
VTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRT
QRDQYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQNN
DMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMRE
HGPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGERIIVKVNGMSSARMDT
SFIDKRTKKDAICNVPLPPTQPLASPDDQVAQRLFIVLSANLPHSILKNI
FSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKVME
AEERSGSDGDDGGRKRLRRN*
BS15950.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:33:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1316-PA | 470 | CG1316-PA | 1..470 | 1..470 | 2480 | 100 | Plus |
Hrb98DE-PF | 361 | CG9983-PF | 5..242 | 6..244 | 197 | 23.9 | Plus |
Hrb98DE-PD | 361 | CG9983-PD | 5..242 | 6..244 | 197 | 23.9 | Plus |
Rbp9-PH | 439 | CG3151-PH | 103..427 | 20..337 | 196 | 21.9 | Plus |
Rbp9-PG | 439 | CG3151-PG | 103..427 | 20..337 | 196 | 21.9 | Plus |