Clone Sequence Records
BS15951.3prime Sequence
800 bp (715 high quality bases) assembled on 2007-04-16
> BS15951.3prime
ATGGTCTAGAAAGCTTTTAGTTTGTAGTAATCGTTATGGCCTGGGCCGGC
GATGCATTCATGTCTTGCACTGTACGCGCCAAATAGGGCTTCGTGTTGGG
CTTTTGAAACAAGTCGGAGACATAGTTGGCCACGACCAGTGCGCTTATGG
AGCCAATAAGCGATCCTGCCAGCACATCGGACCAGTGGTGCTTGTAGTCC
GATACGCGACTTAGGGCTGTGTACCAGGCCACCATGATGAACAGGAACTG
GAGAAGGTGACGCAGCAGCTTGGAGCCCCGCCAGGTCATGCGAGCCTGCA
GGTAGAGCGCCAGATAGACCATGGCGAAGAAGGTGAAGCTGGAGTGGCCA
CTGGGGAAGGAGAGGCGCATCTCTTTGAGCATGCGCGCCGACGATCCAAC
TCCCTTGCATGTGAACTCCTGGATGTATTTTCCCGCATTGATCGCATCGT
CGCAGGTGCTGCCGTCGGCCATTTGAGGCTGGCACACCGCGATGAAATGG
GGACGCAGTCGGCCGATGGAGTACTTGGCTATATCCGTGGTCAGCTGGCT
GAGCACAGCGCCGAAGGCATAGATGCCGATCTTCTTGTAGCACTCGATCA
TCCAGTCGGGCAGTTCGTAGTTCATAAAGACGTACCTTCGACTGGTTGCA
TTGCCATTATCCTGCTTGGCCTTGTTCTGTGAAATGATGACCTCCACGAT
GAATATCACGCCGACTGGTATCACAGCTCCGATGAAGTATAGCATCCAAT
TCCGGACCGTAAAATCGTGGAACGGGTGCTTTAGTGACTCGTCATCGCAA
BS15951.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8804-PB | 1140 | wun-RB | 358..1140 | 799..17 | 3865 | 99.7 | Minus |
CG8804-PA | 903 | wun-RA | 121..903 | 799..17 | 3865 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RA | 1626 | CG8804-RA | 340..1122 | 799..17 | 3885 | 99.7 | Minus |
wun-RB | 2026 | CG8804-RB | 740..1522 | 799..17 | 3885 | 99.7 | Minus |
wun-RC | 1563 | CG8804-RC | 740..1408 | 799..131 | 3315 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9403705..9403926 | 486..707 | 1110 | 100 | Plus |
2R | 25286936 | 2R | 9402656..9402836 | 308..488 | 905 | 100 | Plus |
2R | 25286936 | 2R | 9402408..9402586 | 130..308 | 895 | 100 | Plus |
2R | 25286936 | 2R | 9401035..9401149 | 17..131 | 575 | 100 | Plus |
2R | 25286936 | 2R | 9404307..9404399 | 707..799 | 435 | 97.8 | Plus |
3L | 28110227 | 3L | 22472833..22473048 | 367..152 | 210 | 73.1 | Minus |
2R | 25286936 | 2R | 9417435..9417540 | 267..162 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:29:11 has no hits.
BS15951.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:38 Download gff for
BS15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8804-PA | 122..903 | 17..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:37 Download gff for
BS15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 741..1522 | 17..798 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:52 Download gff for
BS15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 741..1522 | 17..798 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:52 Download gff for
BS15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9402656..9402835 | 308..487 | 100 | <- | Plus |
2R | 9403707..9403925 | 488..706 | 100 | <- | Plus |
2R | 9404307..9404398 | 707..798 | 97 | | Plus |
2R | 9401035..9401148 | 17..130 | 100 | <- | Plus |
2R | 9402409..9402585 | 131..307 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:37 Download gff for
BS15951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5288540..5288653 | 17..130 | 100 | <- | Plus |
arm_2R | 5289914..5290090 | 131..307 | 100 | <- | Plus |
arm_2R | 5290161..5290340 | 308..487 | 100 | <- | Plus |
arm_2R | 5291212..5291430 | 488..706 | 100 | <- | Plus |
arm_2R | 5291812..5291903 | 707..798 | 97 | | Plus |
BS15951.5prime Sequence
928 bp (748 high quality bases) assembled on 2007-04-16
> BS15951.5prime
GAAGTTATCAGTCGACATGCCAGCCGTGAAAATAATAATGAGTACCGAAA
CGTCGGCGAGCGAGACAACACCGCTGCGGCGGTCGGAAAACGAAACACCT
GACCATAAAGAACTGGCCCAAAGTAACAGCAACAGTCGACAAACAACAGT
TAATAGCAACAACAATAACTACAGTAACTCGGTGCAAGTGCGTCTGCAGG
AACAGGACAGAGATAGCGACAGCGAGCAACAACAACATACTGCCACCATC
ACCATGGATACCAACAAAAGAATCCTCTGCCGCGTGGGCTTGGATGTTTT
AATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTTTTCCTGCTGGGCG
AGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTCACTGAAGCACCCG
TTCCACGATTCTACGGTCCGGAATTGGATGCTATACTTCATCGGAGCTGT
GATACCAGTCGGCGTGATATTCATCGTGGAGGTCATCATTTCACAGAACA
AGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAGGTACGTCTTTATG
AACTACGAACTGCCCGACTGGATGATCGAGTGCTACAAGAAGATCGGCAT
CTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACGGATATAGCCAAGT
ACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGTGTGCCAGCCTCAA
ATGGCCGACGGCAGCACCTGCGACGATGCGATCAATGCGGGAAAATACAT
CCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCGCGCATGCTCAAAG
AGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTTCACCTTCTTCGCC
ATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGACCTGGCGGGGGCT
CCAAGCTGCTGCGTCACCTTTCCCAGTT
BS15951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:09:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8804-PB | 1140 | wun-RB | 1..903 | 17..920 | 4480 | 99.8 | Plus |
CG8804-PA | 903 | wun-RA | 1..666 | 254..920 | 3295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RC | 1563 | CG8804-RC | 383..1293 | 17..928 | 4505 | 99.7 | Plus |
wun-RB | 2026 | CG8804-RB | 383..1293 | 17..928 | 4505 | 99.7 | Plus |
wun-RA | 1626 | CG8804-RA | 1..893 | 35..928 | 4415 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9409213..9409510 | 314..17 | 1490 | 100 | Minus |
2R | 25286936 | 2R | 9403705..9403926 | 687..466 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 9402656..9402836 | 865..685 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9404307..9404459 | 466..314 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9402524..9402586 | 928..865 | 240 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:03 has no hits.
BS15951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 14:00:38 Download gff for
BS15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8804-PB | 1..911 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:58:40 Download gff for
BS15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 377..1293 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:40 Download gff for
BS15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 377..1293 | 9..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:40 Download gff for
BS15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9402656..9402835 | 686..865 | 100 | <- | Minus |
2R | 9402524..9402585 | 866..928 | 95 | <- | Minus |
2R | 9403707..9403925 | 467..685 | 100 | <- | Minus |
2R | 9404307..9404458 | 315..466 | 100 | <- | Minus |
2R | 9409213..9409516 | 9..314 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:58:40 Download gff for
BS15951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5290029..5290090 | 866..928 | 95 | <- | Minus |
arm_2R | 5291212..5291430 | 467..685 | 100 | <- | Minus |
arm_2R | 5290161..5290340 | 686..865 | 100 | <- | Minus |
arm_2R | 5291812..5291963 | 315..466 | 100 | <- | Minus |
arm_2R | 5296718..5297021 | 9..314 | 98 | | Minus |
BS15951.complete Sequence
1172 bp assembled on 2007-05-07
GenBank Submission: FJ637992
> BS15951.complete
GAAGTTATCAGTCGACATGCCAGCCGTGAAAATAATAATGAGTACCGAAA
CGTCGGCGAGCGAGACAACACCGCTGCGGCGGTCGGAAAACGAAACACCT
GACCATAAAGAACTGGCCCAAAGTAACAGCAACAGTCGACAAACAACAGT
TAATAGCAACAACAATAACTACAGTAACTCGGTGCAAGTGCGTCTGCAGG
AACAGGACAGAGATAGCGACAGCGAGCAACAACAACATACTGCCACCATC
ACCATGGATACCAACAAAAGAATCCTCTGCCGCGTGGGCTTGGATGTTTT
AATCTTGCTCTGCGCTGGATTTCCCATACTGCTGTTTTTCCTGCTGGGCG
AGCCGTACAAGCGGGGCTTCTTCTGCGATGACGAGTCACTGAAGCACCCG
TTCCACGATTCTACGGTCCGGAATTGGATGCTATACTTCATCGGAGCTGT
GATACCAGTCGGCGTGATATTCATCGTGGAGGTCATCATTTCACAGAACA
AGGCCAAGCAGGATAATGGCAATGCAACCAGTCGAAGGTACGTCTTTATG
AACTACGAACTGCCCGACTGGATGATCGAGTGCTACAAGAAGATCGGCAT
CTATGCCTTCGGCGCTGTGCTCAGCCAGCTGACCACGGATATAGCCAAGT
ACTCCATCGGCCGACTGCGTCCCCATTTCATCGCGGTGTGCCAGCCTCAA
ATGGCCGACGGCAGCACCTGCGACGATGCGATCAATGCGGGAAAATACAT
CCAGGAGTTCACATGCAAGGGAGTTGGATCGTCGGCGCGCATGCTCAAAG
AGATGCGCCTCTCCTTCCCCAGTGGCCACTCCAGCTTCACCTTCTTCGCC
ATGGTCTATCTGGCGCTCTACCTGCAGGCTCGCATGACCTGGCGGGGCTC
CAAGCTGCTGCGTCACCTTCTCCAGTTCCTGTTCATCATGGTGGCCTGGT
ACACAGCCCTAAGTCGCGTATCGGACTACAAGCACCACTGGTCCGATGTG
CTGGCAGGATCGCTTATTGGCTCCATAAGCGCACTGGTCGTGGCCAACTA
TGTCTCCGACTTGTTTCAAAAGCCCAACACGAAGCCCTATTTGGCGCGTA
CAGTGCAAGACATGAATGCATCGCCGGCCCAGGCCATAACGATTACTACA
AACTAAAAGCTTTCTAGACCAT
BS15951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RB | 1140 | CG8804-PB | 1..1140 | 17..1156 | 5700 | 100 | Plus |
wun-RC | 1095 | CG8804-PC | 1..1026 | 17..1042 | 5130 | 100 | Plus |
wun-RA | 903 | CG8804-PA | 1..903 | 254..1156 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:57:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-RB | 2026 | CG8804-RB | 383..1522 | 17..1156 | 5700 | 100 | Plus |
wun-RA | 1626 | CG8804-RA | 1..1122 | 35..1156 | 5610 | 100 | Plus |
wun-RC | 1563 | CG8804-RC | 383..1408 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9409213..9409510 | 314..17 | 1490 | 100 | Minus |
2R | 25286936 | 2R | 9403705..9403926 | 687..466 | 1110 | 100 | Minus |
2R | 25286936 | 2R | 9402656..9402836 | 865..685 | 905 | 100 | Minus |
2R | 25286936 | 2R | 9402408..9402586 | 1043..865 | 895 | 100 | Minus |
2R | 25286936 | 2R | 9404307..9404459 | 466..314 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9401035..9401149 | 1156..1042 | 575 | 100 | Minus |
3L | 28110227 | 3L | 22472833..22473048 | 806..1021 | 210 | 73.1 | Plus |
2R | 25286936 | 2R | 9417435..9417540 | 906..1011 | 200 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:57:02 has no hits.
BS15951.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:38 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 1..1140 | 17..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:39 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 374..1519 | 9..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:41 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 383..1520 | 17..1154 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:38 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 374..1519 | 9..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:50 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wun-RB | 383..1520 | 17..1154 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:50 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9401037..9401148 | 1043..1154 | 100 | <- | Minus |
2R | 9402409..9402585 | 866..1042 | 100 | <- | Minus |
2R | 9402656..9402835 | 686..865 | 100 | <- | Minus |
2R | 9403707..9403925 | 467..685 | 100 | <- | Minus |
2R | 9404307..9404458 | 315..466 | 100 | <- | Minus |
2R | 9409213..9409510 | 17..314 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:41 Download gff for
BS15951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5291212..5291430 | 467..685 | 100 | <- | Minus |
arm_2R | 5291812..5291963 | 315..466 | 100 | <- | Minus |
arm_2R | 5288542..5288653 | 1043..1154 | 100 | <- | Minus |
arm_2R | 5289914..5290090 | 866..1042 | 100 | <- | Minus |
arm_2R | 5290161..5290340 | 686..865 | 100 | <- | Minus |
arm_2R | 5296718..5297015 | 17..314 | 100 | | Minus |
BS15951.pep Sequence
Translation from 16 to 1155
> BS15951.pep
MPAVKIIMSTETSASETTPLRRSENETPDHKELAQSNSNSRQTTVNSNNN
NYSNSVQVRLQEQDRDSDSEQQQHTATITMDTNKRILCRVGLDVLILLCA
GFPILLFFLLGEPYKRGFFCDDESLKHPFHDSTVRNWMLYFIGAVIPVGV
IFIVEVIISQNKAKQDNGNATSRRYVFMNYELPDWMIECYKKIGIYAFGA
VLSQLTTDIAKYSIGRLRPHFIAVCQPQMADGSTCDDAINAGKYIQEFTC
KGVGSSARMLKEMRLSFPSGHSSFTFFAMVYLALYLQARMTWRGSKLLRH
LLQFLFIMVAWYTALSRVSDYKHHWSDVLAGSLIGSISALVVANYVSDLF
QKPNTKPYLARTVQDMNASPAQAITITTN*
BS15951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wun-PB | 379 | CG8804-PB | 1..379 | 1..379 | 1969 | 100 | Plus |
wun-PC | 364 | CG8804-PC | 1..343 | 1..343 | 1781 | 99.7 | Plus |
wun-PA | 300 | CG8804-PA | 1..300 | 80..379 | 1573 | 100 | Plus |
wun2-PA | 350 | CG8805-PA | 8..347 | 13..344 | 799 | 45.6 | Plus |
wun2-PB | 246 | CG8805-PB | 1..243 | 104..344 | 716 | 54.3 | Plus |